Wall clock time and date at job start Mon Mar 30 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47329 * 2 1 4 4 C 1.50704 * 109.47336 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99539 * 270.01845 * 4 3 2 6 6 C 1.38211 * 119.99784 * 179.97438 * 5 4 3 7 7 C 1.38263 * 119.99669 * 359.81584 * 6 5 4 8 8 C 1.38210 * 120.00172 * 0.41628 * 7 6 5 9 9 C 1.50703 * 119.99871 * 179.81073 * 8 7 6 10 10 N 1.46899 * 109.47107 * 269.72669 * 9 8 7 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46835 * 325.00273 * 11 10 9 13 13 C 1.52997 * 109.46874 * 85.00270 * 11 10 9 14 14 C 1.50699 * 109.46851 * 204.99994 * 11 10 9 15 15 H 1.07998 * 120.00472 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99705 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99689 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00273 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.46892 * 60.00199 * 18 16 14 20 20 H 1.48506 * 109.47288 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47425 * 300.00398 * 18 16 14 22 22 C 1.38210 * 119.99948 * 89.99850 * 4 3 2 23 23 H 1.08998 * 109.47346 * 300.00081 * 1 2 3 24 24 H 1.09009 * 109.47131 * 60.00198 * 1 2 3 25 25 H 1.09000 * 109.46901 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46927 * 239.99887 * 2 1 3 27 27 H 1.08997 * 109.47284 * 120.00144 * 2 1 3 28 28 H 1.08998 * 109.46972 * 59.99690 * 3 2 1 29 29 H 1.09009 * 109.46852 * 299.99973 * 3 2 1 30 30 H 1.08003 * 119.99991 * 0.02562 * 5 4 3 31 31 H 1.08003 * 120.00129 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.99573 * 180.23312 * 7 6 5 33 33 H 1.09002 * 109.47152 * 149.72756 * 9 8 7 34 34 H 1.09001 * 109.46980 * 29.72856 * 9 8 7 35 35 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 36 36 H 1.09007 * 109.47280 * 59.99720 * 13 11 10 37 37 H 1.08997 * 109.47489 * 179.97438 * 13 11 10 38 38 H 1.09007 * 109.47004 * 300.00081 * 13 11 10 39 39 H 0.97006 * 119.99890 * 179.97438 * 17 16 14 40 40 H 1.07993 * 120.00257 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2388 1.4419 1.1965 6 6 5.6209 1.4414 1.1960 7 6 6.3117 1.4376 -0.0017 8 6 5.6201 1.4430 -1.1984 9 6 6.3732 1.4431 -2.5038 10 7 6.6174 2.8282 -2.9280 11 6 7.3517 2.8675 -4.1998 12 1 8.0553 2.0360 -4.2389 13 6 6.3639 2.7549 -5.3627 14 6 8.1050 4.1685 -4.3047 15 1 8.0448 4.8934 -3.5065 16 6 8.8713 4.4333 -5.4200 17 7 8.9443 3.5507 -6.3923 18 14 9.8056 6.0455 -5.5499 19 1 10.7650 6.1539 -4.4216 20 1 10.5479 6.0853 -6.8356 21 1 8.8475 7.1788 -5.4956 22 6 4.2376 1.4426 -1.1979 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 3.6991 1.4411 2.1320 31 1 6.1613 1.4405 2.1311 32 1 7.3917 1.4333 -0.0021 33 1 5.7840 0.9291 -3.2632 34 1 7.3258 0.9296 -2.3737 35 1 5.7528 3.3443 -2.9932 36 1 5.6602 3.5864 -5.3235 37 1 6.9086 2.7845 -6.3063 38 1 5.8189 1.8139 -5.2867 39 1 9.4830 3.7372 -7.1772 40 1 3.6973 1.4423 -2.1329 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381445768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:12 Heat of formation + Delta-G solvation = -1.533677 kcal Electronic energy + Delta-G solvation = -17288.505171 eV Core-core repulsion = 14680.873229 eV Total energy + Delta-G solvation = -2607.631941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.36194 -36.18667 -35.02492 -32.83767 -31.06879 -30.87528 -28.03650 -26.41411 -25.17066 -24.26962 -22.27191 -21.46552 -20.15033 -20.05529 -16.56131 -16.06230 -15.66574 -14.95446 -14.68281 -14.64316 -14.08428 -13.75385 -13.56960 -13.32058 -12.82520 -12.41769 -12.28544 -12.12985 -11.89941 -11.61694 -11.49019 -11.24009 -11.03682 -10.89938 -10.77678 -10.70320 -10.59515 -10.37151 -10.12369 -9.84868 -9.00584 -8.58337 -8.37062 -8.34026 -7.20405 -5.96447 -3.99736 1.59518 1.61710 3.36278 3.39762 3.43600 3.96260 4.46730 4.71695 4.79694 4.96958 5.07342 5.15410 5.31560 5.34735 5.35117 5.42204 5.57348 5.62016 5.69113 5.73684 5.79049 5.84167 5.99985 6.01992 6.14898 6.17402 6.34375 6.38065 6.69274 6.70069 6.77128 6.84947 6.98526 7.11027 7.25166 7.37937 7.75473 7.90374 8.28891 8.55641 8.63307 9.07389 9.65482 11.10538 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033078 B = 0.004096 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.290790 B = 6835.077702 C = 7241.548366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.079 4.079 4 C -0.087 4.087 5 C -0.128 4.128 6 C -0.121 4.121 7 C -0.104 4.104 8 C -0.062 4.062 9 C 0.094 3.906 10 N -0.677 5.677 11 C 0.211 3.789 12 H 0.034 0.966 13 C -0.169 4.169 14 C -0.495 4.495 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.114 4.114 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.326 0.674 36 H 0.027 0.973 37 H 0.089 0.911 38 H 0.005 0.995 39 H 0.260 0.740 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.740 -6.783 12.552 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.116 4.116 4 C -0.087 4.087 5 C -0.147 4.147 6 C -0.139 4.139 7 C -0.122 4.122 8 C -0.063 4.063 9 C -0.035 4.035 10 N -0.307 5.307 11 C 0.103 3.897 12 H 0.052 0.948 13 C -0.228 4.228 14 C -0.534 4.534 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.133 4.133 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.142 0.858 36 H 0.046 0.954 37 H 0.108 0.892 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.061 -6.740 12.739 18.794 hybrid contribution -0.132 0.603 -0.825 1.031 sum -12.194 -6.137 11.914 18.119 Atomic orbital electron populations 1.21794 0.95891 1.01534 1.01786 1.21508 0.95416 0.96344 1.02356 1.20604 0.91258 0.97105 1.02641 1.19776 0.95236 1.00472 0.93195 1.20898 0.94230 1.02438 0.97091 1.21086 0.94201 1.00722 0.97867 1.21064 1.00098 0.99347 0.91727 1.20050 0.93300 0.97196 0.95726 1.20907 0.98160 0.93109 0.91313 1.60868 1.25052 1.09162 1.35602 1.19199 0.91034 0.97731 0.81728 0.94839 1.22437 0.99023 0.95872 1.05518 1.21130 1.26866 1.02288 1.03096 0.91978 1.24953 0.96844 0.97029 0.95732 1.69878 1.40884 1.34866 1.08224 0.86556 0.79912 0.83823 0.77053 1.20284 1.21474 1.20365 1.20926 0.93752 1.01280 0.97323 0.92816 0.92681 0.92818 0.91832 0.91996 0.91317 0.91146 0.86801 0.86497 0.85993 0.95520 0.90933 0.85766 0.95350 0.89216 0.97645 0.93030 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.09 5.92 -26.73 -0.16 -1.24 16 3 C -0.08 -0.80 5.34 -27.88 -0.15 -0.95 16 4 C -0.09 -1.11 5.13 -104.62 -0.54 -1.65 16 5 C -0.13 -1.59 9.70 -39.58 -0.38 -1.97 16 6 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 7 C -0.10 -1.57 9.70 -39.58 -0.38 -1.96 16 8 C -0.06 -1.01 5.39 -104.62 -0.56 -1.57 16 9 C 0.09 1.75 5.61 -4.98 -0.03 1.72 16 10 N -0.68 -14.75 6.22 -109.22 -0.68 -15.43 16 11 C 0.21 5.36 2.57 -68.86 -0.18 5.19 16 12 H 0.03 0.93 7.80 -51.93 -0.40 0.53 16 13 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 14 C -0.49 -13.91 8.84 -34.44 -0.30 -14.22 16 15 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 16 C 0.05 1.54 5.30 -17.82 -0.09 1.44 16 17 N -0.90 -25.94 11.32 55.43 0.63 -25.31 16 18 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.11 -1.67 9.36 -39.58 -0.37 -2.04 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.07 0.71 8.09 -51.92 -0.42 0.29 16 30 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.03 0.49 7.38 -51.93 -0.38 0.11 16 34 H 0.07 1.36 8.00 -51.93 -0.42 0.95 16 35 H 0.33 6.87 8.47 -39.29 -0.33 6.53 16 36 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 38 H 0.00 0.10 7.45 -51.92 -0.39 -0.29 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 328.70 15.07 4.95 4.95 Total: -1.00 -28.86 328.70 -9.82 -38.68 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.85 Total: 4.19 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -2.85 Total: -23.80 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.05 Total: -40.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.86 -9.82 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381445768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.149 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds