Wall clock time and date at job start Mon Mar 30 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47329 * 2 1 4 4 C 1.50704 * 109.47336 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99539 * 270.01845 * 4 3 2 6 6 C 1.38211 * 119.99784 * 179.97438 * 5 4 3 7 7 C 1.38263 * 119.99669 * 359.81584 * 6 5 4 8 8 C 1.38210 * 120.00172 * 0.41628 * 7 6 5 9 9 C 1.50703 * 119.99871 * 179.81073 * 8 7 6 10 10 N 1.46899 * 109.47107 * 269.72669 * 9 8 7 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46835 * 325.00273 * 11 10 9 13 13 C 1.52997 * 109.46874 * 85.00270 * 11 10 9 14 14 C 1.50699 * 109.46851 * 204.99994 * 11 10 9 15 15 H 1.07998 * 120.00472 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99705 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99689 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00273 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.46892 * 60.00199 * 18 16 14 20 20 H 1.48506 * 109.47288 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47425 * 300.00398 * 18 16 14 22 22 C 1.38210 * 119.99948 * 89.99850 * 4 3 2 23 23 H 1.08998 * 109.47346 * 300.00081 * 1 2 3 24 24 H 1.09009 * 109.47131 * 60.00198 * 1 2 3 25 25 H 1.09000 * 109.46901 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46927 * 239.99887 * 2 1 3 27 27 H 1.08997 * 109.47284 * 120.00144 * 2 1 3 28 28 H 1.08998 * 109.46972 * 59.99690 * 3 2 1 29 29 H 1.09009 * 109.46852 * 299.99973 * 3 2 1 30 30 H 1.08003 * 119.99991 * 0.02562 * 5 4 3 31 31 H 1.08003 * 120.00129 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.99573 * 180.23312 * 7 6 5 33 33 H 1.09002 * 109.47152 * 149.72756 * 9 8 7 34 34 H 1.09001 * 109.46980 * 29.72856 * 9 8 7 35 35 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 36 36 H 1.09007 * 109.47280 * 59.99720 * 13 11 10 37 37 H 1.08997 * 109.47489 * 179.97438 * 13 11 10 38 38 H 1.09007 * 109.47004 * 300.00081 * 13 11 10 39 39 H 0.97006 * 119.99890 * 179.97438 * 17 16 14 40 40 H 1.07993 * 120.00257 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2388 1.4419 1.1965 6 6 5.6209 1.4414 1.1960 7 6 6.3117 1.4376 -0.0017 8 6 5.6201 1.4430 -1.1984 9 6 6.3732 1.4431 -2.5038 10 7 6.6174 2.8282 -2.9280 11 6 7.3517 2.8675 -4.1998 12 1 8.0553 2.0360 -4.2389 13 6 6.3639 2.7549 -5.3627 14 6 8.1050 4.1685 -4.3047 15 1 8.0448 4.8934 -3.5065 16 6 8.8713 4.4333 -5.4200 17 7 8.9443 3.5507 -6.3923 18 14 9.8056 6.0455 -5.5499 19 1 10.7650 6.1539 -4.4216 20 1 10.5479 6.0853 -6.8356 21 1 8.8475 7.1788 -5.4956 22 6 4.2376 1.4426 -1.1979 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 3.6991 1.4411 2.1320 31 1 6.1613 1.4405 2.1311 32 1 7.3917 1.4333 -0.0021 33 1 5.7840 0.9291 -3.2632 34 1 7.3258 0.9296 -2.3737 35 1 5.7528 3.3443 -2.9932 36 1 5.6602 3.5864 -5.3235 37 1 6.9086 2.7845 -6.3063 38 1 5.8189 1.8139 -5.2867 39 1 9.4830 3.7372 -7.1772 40 1 3.6973 1.4423 -2.1329 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381445768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:11 Heat of formation + Delta-G solvation = -16.562115 kcal Electronic energy + Delta-G solvation = -17289.156853 eV Core-core repulsion = 14680.873229 eV Total energy + Delta-G solvation = -2608.283623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45672 -37.85858 -36.02876 -34.64004 -32.55671 -31.86095 -29.72926 -27.27068 -27.26088 -25.80237 -23.17942 -22.48366 -22.10410 -21.14299 -18.43837 -17.33850 -16.79360 -16.68164 -16.10572 -15.79646 -15.40981 -15.09151 -14.64202 -14.49416 -14.30800 -13.85562 -13.65357 -13.38982 -13.10327 -12.88870 -12.85014 -12.72446 -12.62888 -12.44001 -12.17502 -12.08949 -11.99386 -11.76287 -11.52236 -11.44731 -11.05753 -10.49435 -9.69458 -9.46519 -8.98081 -8.10453 -6.22234 0.49353 0.54052 1.42961 1.44971 1.52841 2.43675 2.86829 3.17458 3.71194 3.87049 3.98296 4.02229 4.21939 4.27956 4.30239 4.44934 4.55156 4.59314 4.66406 4.76276 4.77335 4.82473 4.89068 4.91696 5.04353 5.07266 5.14933 5.19639 5.32254 5.33160 5.38105 5.48077 5.62182 5.67389 5.75122 5.79799 5.82822 6.18448 6.25248 6.61848 6.77542 6.91849 7.47699 8.94866 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033078 B = 0.004096 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.290790 B = 6835.077702 C = 7241.548366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.077 4.077 4 C -0.086 4.086 5 C -0.125 4.125 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.082 4.082 9 C 0.101 3.899 10 N -0.680 5.680 11 C 0.215 3.785 12 H 0.002 0.998 13 C -0.156 4.156 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.009 3.991 17 N -0.923 5.923 18 Si 0.962 3.038 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.271 1.271 22 C -0.125 4.125 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.116 0.884 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.330 0.670 36 H 0.032 0.968 37 H 0.063 0.937 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.097 -6.324 14.248 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.114 4.114 4 C -0.086 4.086 5 C -0.143 4.143 6 C -0.137 4.137 7 C -0.141 4.141 8 C -0.083 4.083 9 C -0.028 4.028 10 N -0.310 5.310 11 C 0.107 3.893 12 H 0.020 0.980 13 C -0.215 4.215 14 C -0.557 4.557 15 H 0.072 0.928 16 C -0.189 4.189 17 N -0.563 5.563 18 Si 0.788 3.212 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.196 1.196 22 C -0.143 4.143 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.134 0.866 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.432 -6.290 14.447 20.705 hybrid contribution 0.246 0.402 -1.284 1.368 sum -13.186 -5.888 13.163 19.539 Atomic orbital electron populations 1.21774 0.94654 1.02111 1.02236 1.21477 0.96464 0.95478 1.01953 1.20651 0.89319 0.97955 1.03448 1.20093 0.96742 0.99074 0.92647 1.21295 0.94092 1.00703 0.98161 1.21380 0.94824 0.99533 0.97953 1.21151 1.00082 1.00451 0.92416 1.19859 0.93964 0.99750 0.94682 1.20820 0.98066 0.91028 0.92873 1.60726 1.25256 1.11449 1.33521 1.18970 0.91045 0.95545 0.83790 0.97960 1.22237 0.98595 0.97079 1.03610 1.21420 1.27899 1.03174 1.03171 0.92817 1.25734 0.97576 1.00313 0.95318 1.70005 1.41288 1.36457 1.08557 0.85548 0.78654 0.79861 0.77157 1.19908 1.20839 1.19598 1.21010 0.93137 1.01778 0.98403 0.91868 0.92740 0.92234 0.92997 0.91688 0.89648 0.91223 0.83750 0.83949 0.86621 0.95499 0.92082 0.85281 0.94924 0.91797 0.95657 0.92923 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.87 5.92 30.59 0.18 -1.68 16 3 C -0.08 -1.36 5.34 29.85 0.16 -1.20 16 4 C -0.09 -2.01 5.13 -19.86 -0.10 -2.11 16 5 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 6 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 7 C -0.12 -3.66 9.70 22.27 0.22 -3.45 16 8 C -0.08 -2.66 5.39 -19.87 -0.11 -2.77 16 9 C 0.10 3.84 5.61 85.56 0.48 4.32 16 10 N -0.68 -30.22 6.22 -499.46 -3.11 -33.33 16 11 C 0.21 11.24 2.57 44.17 0.11 11.35 16 12 H 0.00 0.14 7.80 -2.39 -0.02 0.12 16 13 C -0.16 -7.68 8.94 71.98 0.64 -7.04 16 14 C -0.52 -29.61 8.84 25.60 0.23 -29.38 16 15 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 16 C 0.01 0.49 5.30 84.65 0.45 0.94 16 17 N -0.92 -54.05 11.32 21.45 0.24 -53.81 16 18 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 C -0.12 -3.55 9.36 22.27 0.21 -3.34 16 23 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 29 H 0.07 1.26 8.09 -2.38 -0.02 1.24 16 30 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.03 1.01 7.38 -2.39 -0.02 0.99 16 34 H 0.06 2.41 8.00 -2.39 -0.02 2.39 16 35 H 0.33 14.06 8.47 -89.69 -0.76 13.30 16 36 H 0.03 1.53 8.13 -2.38 -0.02 1.51 16 37 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 38 H 0.02 1.10 7.45 -2.38 -0.02 1.08 16 39 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 40 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -61.81 328.70 3.02 -58.79 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.23 Total: 22.36 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 3.62 Total: -40.72 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.86 Total: -87.13 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -61.81 3.02 -58.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381445768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.228 kcal (2) G-P(sol) polarization free energy of solvation -61.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds