Wall clock time and date at job start Mon Mar 30 2020 05:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47286 * 2 1 4 4 C 1.52998 * 109.46817 * 59.99838 * 3 2 1 5 5 C 1.53006 * 109.46740 * 300.00285 * 3 2 1 6 6 C 1.52995 * 109.47286 * 180.02562 * 3 2 1 7 7 N 1.46505 * 109.46788 * 179.97438 * 6 3 2 8 8 C 1.38855 * 119.99648 * 179.97438 * 7 6 3 9 9 C 1.39568 * 119.84643 * 359.73541 * 8 7 6 10 10 C 1.36336 * 120.16398 * 179.71732 * 9 8 7 11 11 C 1.40887 * 119.83522 * 0.54986 * 10 9 8 12 12 C 1.41138 * 120.15888 * 179.70431 * 11 10 9 13 13 H 1.07998 * 120.00076 * 204.63105 * 12 11 10 14 14 C 1.39867 * 119.99657 * 24.62602 * 12 11 10 15 15 N 1.30899 * 120.00270 * 17.95962 * 14 12 11 16 16 Si 1.86808 * 119.99673 * 197.95959 * 14 12 11 17 17 H 1.48496 * 109.47088 * 60.00108 * 16 14 12 18 18 H 1.48501 * 109.46866 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46731 * 299.99953 * 16 14 12 20 20 C 1.40883 * 119.68869 * 359.72272 * 11 10 9 21 21 C 1.36343 * 119.84059 * 359.97438 * 20 11 10 22 22 H 1.09001 * 109.47505 * 299.99964 * 1 2 3 23 23 H 1.08998 * 109.47410 * 60.00211 * 1 2 3 24 24 H 1.08999 * 109.47145 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47505 * 240.00036 * 2 1 3 26 26 H 1.08998 * 109.47410 * 119.99789 * 2 1 3 27 27 H 1.09002 * 109.46775 * 180.02562 * 4 3 2 28 28 H 1.08999 * 109.47316 * 300.00201 * 4 3 2 29 29 H 1.08992 * 109.47519 * 60.00372 * 4 3 2 30 30 H 1.09001 * 109.46918 * 299.99271 * 5 3 2 31 31 H 1.08999 * 109.47417 * 59.99784 * 5 3 2 32 32 H 1.08999 * 109.46675 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47083 * 60.00264 * 6 3 2 34 34 H 1.08998 * 109.47410 * 299.99789 * 6 3 2 35 35 H 0.96996 * 120.00184 * 0.02562 * 7 6 3 36 36 H 1.08003 * 119.91446 * 359.97233 * 9 8 7 37 37 H 1.08000 * 120.08688 * 180.27597 * 10 9 8 38 38 H 0.97001 * 120.00134 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.08598 * 179.97438 * 20 11 10 40 40 H 1.07998 * 119.92670 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5299 2.1638 -1.2493 6 6 3.5699 1.4425 -0.0006 7 7 4.0582 2.8238 -0.0013 8 6 5.4234 3.0775 -0.0014 9 6 6.3275 2.0143 0.0047 10 6 7.6693 2.2559 -0.0012 11 6 8.1425 3.5830 -0.0017 12 6 9.5301 3.8410 -0.0015 13 1 9.9055 4.7757 0.3880 14 6 10.4190 2.8860 -0.5056 15 7 9.9799 1.9294 -1.2838 16 14 12.2329 2.9756 -0.0681 17 1 12.3926 2.8723 1.4046 18 1 12.9562 1.8571 -0.7246 19 1 12.7918 4.2690 -0.5372 20 6 7.2240 4.6513 -0.0020 21 6 5.8850 4.3948 -0.0024 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8930 3.1915 1.2490 28 1 0.4400 2.1637 1.2492 29 1 1.8932 1.6500 2.1392 30 1 1.8933 1.6499 -2.1393 31 1 0.4399 2.1637 -1.2493 32 1 1.8929 3.1915 -1.2490 33 1 3.9329 0.9289 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 3.4279 3.5610 -0.0008 36 1 5.9632 0.9976 0.0099 37 1 8.3677 1.4322 -0.0010 38 1 10.5964 1.2673 -1.6337 39 1 7.5797 5.6711 -0.0020 40 1 5.1797 5.2126 -0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381524159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:19 Heat of formation + Delta-G solvation = -14.744723 kcal Electronic energy + Delta-G solvation = -17688.827354 eV Core-core repulsion = 15080.622539 eV Total energy + Delta-G solvation = -2608.204815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14852 -38.92250 -36.12505 -34.43797 -31.43521 -31.34846 -29.96571 -28.16011 -27.65905 -25.99588 -24.01751 -22.87565 -21.67130 -19.46071 -19.14590 -17.96009 -16.84749 -16.42591 -15.90732 -15.64350 -15.51980 -15.05848 -14.65529 -14.40530 -14.22569 -13.81786 -13.73210 -13.42179 -13.02649 -12.89315 -12.79423 -12.70602 -12.67442 -12.53051 -12.25448 -11.99264 -11.58597 -11.42208 -11.38260 -11.34910 -11.12573 -11.03618 -10.27083 -9.40398 -8.54180 -8.14368 -5.99872 1.11981 1.19175 1.40065 1.51184 1.60641 2.27776 2.84961 2.94626 3.80011 3.84552 3.91478 3.94431 4.42615 4.42978 4.47700 4.50920 4.64071 4.77925 4.78193 4.78933 4.91166 5.02996 5.07840 5.09919 5.15623 5.17734 5.19103 5.25266 5.28485 5.32600 5.46658 5.55078 5.60575 5.69772 5.81237 5.97291 6.19240 6.39892 6.68214 6.88450 7.08924 7.16395 7.33984 8.48992 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046967 B = 0.004245 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.019960 B = 6593.948265 C = 6928.339432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.067 4.067 4 C -0.138 4.138 5 C -0.139 4.139 6 C 0.145 3.855 7 N -0.746 5.746 8 C 0.113 3.887 9 C -0.176 4.176 10 C -0.144 4.144 11 C 0.035 3.965 12 C -0.508 4.508 13 H 0.068 0.932 14 C 0.032 3.968 15 N -0.842 5.842 16 Si 0.977 3.023 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.262 1.262 20 C -0.195 4.195 21 C -0.167 4.167 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.395 0.605 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.097 0.903 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 -3.135 2.089 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.067 4.067 4 C -0.195 4.195 5 C -0.196 4.196 6 C 0.020 3.980 7 N -0.382 5.382 8 C 0.013 3.987 9 C -0.199 4.199 10 C -0.164 4.164 11 C 0.032 3.968 12 C -0.540 4.540 13 H 0.086 0.914 14 C -0.180 4.180 15 N -0.471 5.471 16 Si 0.798 3.202 17 H -0.188 1.188 18 H -0.194 1.194 19 H -0.186 1.186 20 C -0.215 4.215 21 C -0.189 4.189 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.231 0.769 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.802 -3.529 1.943 16.307 hybrid contribution 1.034 0.204 -0.036 1.055 sum -14.768 -3.325 1.907 15.257 Atomic orbital electron populations 1.21843 0.94308 1.02087 1.02469 1.21506 0.97196 0.94281 1.02004 1.20713 0.92225 0.96989 0.96776 1.21875 1.01678 0.99795 0.96193 1.21885 1.01692 0.99790 0.96260 1.21177 0.94046 0.83673 0.99057 1.43952 1.01966 1.06537 1.85712 1.17484 0.84458 0.92676 1.04072 1.20231 0.93137 0.96769 1.09719 1.20857 0.94067 0.97004 1.04436 1.17803 0.93774 0.91832 0.93411 1.19580 0.92116 1.03361 1.38910 0.91369 1.26618 1.05458 0.93812 0.92098 1.69918 1.38933 1.13765 1.24450 0.85342 0.76510 0.78869 0.79434 1.18769 1.19443 1.18603 1.20757 0.93178 0.97417 1.10134 1.20099 0.95195 0.94370 1.09258 0.91914 0.92035 0.92227 0.92193 0.92004 0.93187 0.90630 0.93131 0.93353 0.90590 0.93223 0.94773 0.94383 0.76898 0.88104 0.88409 0.90780 0.88478 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.21 71.98 0.66 -1.43 16 2 C -0.11 -2.02 4.99 30.59 0.15 -1.87 16 3 C -0.07 -1.39 0.56 -52.18 -0.03 -1.42 16 4 C -0.14 -2.65 7.95 71.98 0.57 -2.08 16 5 C -0.14 -2.74 7.95 71.98 0.57 -2.17 16 6 C 0.15 4.23 3.78 86.38 0.33 4.56 16 7 N -0.75 -24.99 5.10 -338.99 -1.73 -26.72 16 8 C 0.11 4.92 6.67 38.67 0.26 5.18 16 9 C -0.18 -8.56 9.23 22.15 0.20 -8.35 16 10 C -0.14 -7.97 8.64 22.47 0.19 -7.78 16 11 C 0.03 1.98 5.57 -21.27 -0.12 1.86 16 12 C -0.51 -29.15 9.03 23.38 0.21 -28.94 16 13 H 0.07 3.78 7.91 -2.91 -0.02 3.75 16 14 C 0.03 1.72 5.13 85.23 0.44 2.15 16 15 N -0.84 -46.92 10.96 21.82 0.24 -46.68 16 16 Si 0.98 40.74 29.60 68.60 2.03 42.77 16 17 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 20 C -0.19 -9.96 9.74 22.48 0.22 -9.74 16 21 C -0.17 -7.48 9.82 22.15 0.22 -7.27 16 22 H 0.06 0.81 6.43 -2.39 -0.02 0.80 16 23 H 0.06 0.81 6.43 -2.39 -0.02 0.79 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.02 6.86 -2.39 -0.02 1.01 16 28 H 0.07 1.15 6.43 -2.39 -0.02 1.13 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.19 6.43 -2.39 -0.02 1.17 16 32 H 0.05 1.04 6.86 -2.39 -0.02 1.03 16 33 H 0.03 1.09 7.94 -2.39 -0.02 1.07 16 34 H 0.04 1.18 7.91 -2.39 -0.02 1.16 16 35 H 0.40 11.55 6.16 -92.71 -0.57 10.98 16 36 H 0.10 4.49 6.68 -2.91 -0.02 4.48 16 37 H 0.10 5.71 6.16 -2.91 -0.02 5.70 16 38 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 39 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -61.95 312.56 4.86 -57.09 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.44 Total: 30.84 kcal Atomic # 6 Polarization: -61.18 SS G_CDS: 3.88 Total: -57.30 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -1.49 Total: -73.40 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -61.95 4.86 -57.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381524159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.344 kcal (2) G-P(sol) polarization free energy of solvation -61.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds