Wall clock time and date at job start Mon Mar 30 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00357 * 2 1 4 4 H 1.08997 * 109.47053 * 277.17416 * 3 2 1 5 5 C 1.50708 * 109.47131 * 37.17188 * 3 2 1 6 6 H 1.07997 * 119.99799 * 64.63940 * 5 3 2 7 7 C 1.37871 * 120.00132 * 244.63997 * 5 3 2 8 8 N 1.31518 * 119.99660 * 5.09308 * 7 5 3 9 9 Si 1.86798 * 120.00036 * 185.08986 * 7 5 3 10 10 H 1.48505 * 109.46935 * 60.00226 * 9 7 5 11 11 H 1.48499 * 109.47004 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47367 * 299.99907 * 9 7 5 13 13 C 1.50699 * 109.47412 * 157.16890 * 3 2 1 14 14 C 1.38233 * 120.00232 * 321.83108 * 13 3 2 15 15 C 1.38231 * 120.00208 * 179.78358 * 14 13 3 16 16 C 1.38245 * 119.99949 * 0.44160 * 15 14 13 17 17 C 1.38232 * 119.99618 * 359.81044 * 16 15 14 18 18 C 1.38237 * 120.00356 * 359.97438 * 17 16 15 19 19 C 1.46897 * 111.00214 * 236.04226 * 2 1 3 20 20 C 1.53006 * 109.46763 * 60.32764 * 19 2 1 21 21 C 1.52998 * 109.47519 * 180.32547 * 19 2 1 22 22 C 1.53001 * 109.47328 * 300.33086 * 19 2 1 23 23 H 1.08997 * 109.47108 * 179.04276 * 1 2 3 24 24 H 1.09000 * 109.46622 * 299.04205 * 1 2 3 25 25 H 1.08993 * 109.46936 * 59.04124 * 1 2 3 26 26 H 0.97004 * 119.99300 * 180.02562 * 8 7 5 27 27 H 1.08001 * 120.00090 * 359.97438 * 14 13 3 28 28 H 1.08003 * 120.00222 * 180.27092 * 15 14 13 29 29 H 1.07997 * 119.99767 * 179.82768 * 16 15 14 30 30 H 1.08000 * 119.99788 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.99907 * 179.97438 * 18 17 16 32 32 H 1.08990 * 109.47268 * 57.47892 * 20 19 2 33 33 H 1.08994 * 109.47213 * 177.48612 * 20 19 2 34 34 H 1.09000 * 109.46888 * 297.48000 * 20 19 2 35 35 H 1.09000 * 109.47165 * 60.00021 * 21 19 2 36 36 H 1.08995 * 109.47114 * 180.02562 * 21 19 2 37 37 H 1.09004 * 109.47017 * 300.00184 * 21 19 2 38 38 H 1.08995 * 109.47435 * 59.99320 * 22 19 2 39 39 H 1.09001 * 109.47124 * 179.97438 * 22 19 2 40 40 H 1.09000 * 109.46575 * 299.99501 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 2.0059 1.7565 -1.0196 5 6 1.1186 2.2462 0.8585 6 1 1.0465 2.0621 1.9202 7 6 0.4085 3.2814 0.2885 8 7 0.4168 3.4442 -1.0165 9 14 -0.5653 4.4526 1.3698 10 1 0.3537 5.1287 2.3204 11 1 -1.2351 5.4697 0.5199 12 1 -1.5893 3.6904 2.1285 13 6 3.3981 1.3710 0.5513 14 6 3.7253 0.5418 1.6077 15 6 5.0130 0.5382 2.1105 16 6 5.9712 1.3707 1.5627 17 6 5.6426 2.2037 0.5097 18 6 4.3560 2.2040 0.0040 19 6 1.9955 -0.7660 -1.1375 20 6 1.5116 -0.1353 -2.4448 21 6 3.5249 -0.7501 -1.0991 22 6 1.4982 -2.2105 -1.0535 23 1 -0.3633 -1.0275 -0.0172 24 1 -0.3632 0.4989 0.8985 25 1 -0.3633 0.5286 -0.8812 26 1 -0.0825 4.1728 -1.4175 27 1 2.9757 -0.1056 2.0383 28 1 5.2698 -0.1129 2.9330 29 1 6.9765 1.3699 1.9574 30 1 6.3910 2.8543 0.0820 31 1 4.0992 2.8552 -0.8184 32 1 1.8277 0.9070 -2.4841 33 1 1.9382 -0.6765 -3.2891 34 1 0.4238 -0.1871 -2.4923 35 1 3.8697 -1.1994 -0.1678 36 1 3.9155 -1.3181 -1.9434 37 1 3.8791 0.2791 -1.1590 38 1 0.4087 -2.2220 -1.0809 39 1 1.8886 -2.7788 -1.8978 40 1 1.8430 -2.6598 -0.1222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382042034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:27 Heat of formation + Delta-G solvation = 32.265204 kcal Electronic energy + Delta-G solvation = -19303.031020 eV Core-core repulsion = 16696.864708 eV Total energy + Delta-G solvation = -2606.166312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.20085 -37.28859 -33.53026 -31.32833 -30.55189 -29.99533 -27.05732 -26.48547 -26.09280 -24.38681 -22.30179 -21.58398 -20.07317 -17.65841 -16.59551 -15.91815 -15.00118 -14.74215 -14.23893 -14.07299 -13.58879 -13.55227 -12.91673 -12.76080 -12.50581 -12.18401 -11.87821 -11.58644 -11.51655 -11.26083 -11.05903 -10.99002 -10.85479 -10.78858 -10.43519 -10.30165 -10.24938 -10.15409 -9.70891 -9.45062 -9.25393 -8.64478 -8.03218 -7.55508 -6.94328 -6.14698 -4.17356 2.26628 2.33176 3.26120 3.30705 3.34640 4.32392 4.68526 5.04675 5.30806 5.58690 5.65380 5.68136 5.75285 5.82083 5.94717 6.16061 6.18730 6.23717 6.32022 6.40274 6.44517 6.49248 6.56689 6.62422 6.68518 6.72563 6.85922 6.88168 6.96588 6.99374 7.09529 7.26723 7.31273 7.42175 7.53252 7.75387 7.78382 7.84861 8.05391 8.41378 8.69635 8.95651 9.44940 10.90559 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.011493 C = 0.008032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.898772 B = 2435.629777 C = 3485.432371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.530 5.530 3 C 0.214 3.786 4 H 0.067 0.933 5 C -0.498 4.498 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.008 4.008 14 C -0.106 4.106 15 C -0.132 4.132 16 C -0.156 4.156 17 C -0.127 4.127 18 C -0.132 4.132 19 C 0.100 3.900 20 C -0.174 4.174 21 C -0.143 4.143 22 C -0.134 4.134 23 H 0.033 0.967 24 H 0.071 0.929 25 H 0.025 0.975 26 H 0.264 0.736 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 -6.172 0.040 7.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.254 5.254 3 C 0.109 3.891 4 H 0.084 0.916 5 C -0.537 4.537 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.010 4.010 14 C -0.124 4.124 15 C -0.150 4.150 16 C -0.174 4.174 17 C -0.145 4.145 18 C -0.151 4.151 19 C 0.009 3.991 20 C -0.233 4.233 21 C -0.200 4.200 22 C -0.192 4.192 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.858 -6.283 0.318 7.948 hybrid contribution -0.778 1.204 -0.208 1.448 sum 4.080 -5.079 0.110 6.516 Atomic orbital electron populations 1.22011 0.88388 0.97549 1.01939 1.62517 1.07511 1.16601 1.38817 1.18717 0.87182 0.84872 0.98331 0.91583 1.20879 1.25429 1.12852 0.94548 0.92296 1.24973 0.96087 0.97366 0.94953 1.69881 1.41840 1.31409 1.09303 0.86625 0.80141 0.80693 0.80449 1.20069 1.21308 1.20060 1.20461 0.95968 0.91411 0.93112 1.20992 0.95300 0.99378 0.96742 1.21032 0.94260 0.99688 1.00022 1.20789 0.98604 0.99294 0.98751 1.20913 0.96434 0.99569 0.97607 1.20992 0.92826 1.00119 1.01167 1.20973 0.94610 0.93383 0.90099 1.22415 1.01110 1.02175 0.97584 1.22203 0.94872 1.02500 1.00457 1.21877 1.00681 0.95918 1.00724 0.94813 0.91002 0.95591 0.92612 0.86048 0.87719 0.87853 0.87645 0.86982 0.91250 0.94165 0.92968 0.92349 0.94302 0.91250 0.92947 0.93684 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.04 8.06 60.07 0.48 1.52 16 2 N -0.53 -11.14 3.70 -222.00 -0.82 -11.96 16 3 C 0.21 5.01 1.71 -70.01 -0.12 4.89 16 4 H 0.07 1.71 4.41 -51.93 -0.23 1.48 16 5 C -0.50 -12.86 6.09 -34.44 -0.21 -13.07 16 6 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 7 C 0.07 1.82 5.45 -17.82 -0.10 1.73 16 8 N -0.89 -23.92 12.63 55.43 0.70 -23.22 16 9 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C -0.01 -0.18 2.43 -104.62 -0.25 -0.44 16 14 C -0.11 -2.11 7.63 -39.59 -0.30 -2.42 16 15 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 16 C -0.16 -2.65 10.05 -39.58 -0.40 -3.05 16 17 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 18 C -0.13 -2.73 8.49 -39.58 -0.34 -3.07 16 19 C 0.10 1.85 0.71 -131.60 -0.09 1.76 16 20 C -0.17 -3.32 7.82 37.16 0.29 -3.03 16 21 C -0.14 -2.57 7.10 37.16 0.26 -2.31 16 22 C -0.13 -2.16 8.24 37.16 0.31 -1.85 16 23 H 0.03 0.62 6.04 -51.93 -0.31 0.31 16 24 H 0.07 1.63 6.73 -51.93 -0.35 1.28 16 25 H 0.03 0.59 6.64 -51.93 -0.34 0.25 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.12 2.47 7.66 -52.49 -0.40 2.07 16 28 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 29 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.11 2.37 8.05 -52.49 -0.42 1.95 16 32 H 0.07 1.51 6.06 -51.93 -0.31 1.20 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 1.01 6.66 -51.93 -0.35 0.67 16 35 H 0.06 1.05 6.87 -51.93 -0.36 0.69 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.36 4.53 -51.93 -0.24 1.12 16 38 H 0.05 0.83 6.29 -51.93 -0.33 0.50 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 303.88 15.07 4.58 4.58 Total: -1.00 -26.11 303.88 -7.97 -34.08 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.15 Total: 5.59 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -1.26 Total: -24.73 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.12 Total: -35.18 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.11 -7.97 -34.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382042034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.346 kcal (2) G-P(sol) polarization free energy of solvation -26.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds