Wall clock time and date at job start Mon Mar 30 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00357 * 2 1 4 4 H 1.08997 * 109.47053 * 277.17416 * 3 2 1 5 5 C 1.50708 * 109.47131 * 37.17188 * 3 2 1 6 6 H 1.07997 * 119.99799 * 64.63940 * 5 3 2 7 7 C 1.37871 * 120.00132 * 244.63997 * 5 3 2 8 8 N 1.31518 * 119.99660 * 5.09308 * 7 5 3 9 9 Si 1.86798 * 120.00036 * 185.08986 * 7 5 3 10 10 H 1.48505 * 109.46935 * 60.00226 * 9 7 5 11 11 H 1.48499 * 109.47004 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47367 * 299.99907 * 9 7 5 13 13 C 1.50699 * 109.47412 * 157.16890 * 3 2 1 14 14 C 1.38233 * 120.00232 * 321.83108 * 13 3 2 15 15 C 1.38231 * 120.00208 * 179.78358 * 14 13 3 16 16 C 1.38245 * 119.99949 * 0.44160 * 15 14 13 17 17 C 1.38232 * 119.99618 * 359.81044 * 16 15 14 18 18 C 1.38237 * 120.00356 * 359.97438 * 17 16 15 19 19 C 1.46897 * 111.00214 * 236.04226 * 2 1 3 20 20 C 1.53006 * 109.46763 * 60.32764 * 19 2 1 21 21 C 1.52998 * 109.47519 * 180.32547 * 19 2 1 22 22 C 1.53001 * 109.47328 * 300.33086 * 19 2 1 23 23 H 1.08997 * 109.47108 * 179.04276 * 1 2 3 24 24 H 1.09000 * 109.46622 * 299.04205 * 1 2 3 25 25 H 1.08993 * 109.46936 * 59.04124 * 1 2 3 26 26 H 0.97004 * 119.99300 * 180.02562 * 8 7 5 27 27 H 1.08001 * 120.00090 * 359.97438 * 14 13 3 28 28 H 1.08003 * 120.00222 * 180.27092 * 15 14 13 29 29 H 1.07997 * 119.99767 * 179.82768 * 16 15 14 30 30 H 1.08000 * 119.99788 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.99907 * 179.97438 * 18 17 16 32 32 H 1.08990 * 109.47268 * 57.47892 * 20 19 2 33 33 H 1.08994 * 109.47213 * 177.48612 * 20 19 2 34 34 H 1.09000 * 109.46888 * 297.48000 * 20 19 2 35 35 H 1.09000 * 109.47165 * 60.00021 * 21 19 2 36 36 H 1.08995 * 109.47114 * 180.02562 * 21 19 2 37 37 H 1.09004 * 109.47017 * 300.00184 * 21 19 2 38 38 H 1.08995 * 109.47435 * 59.99320 * 22 19 2 39 39 H 1.09001 * 109.47124 * 179.97438 * 22 19 2 40 40 H 1.09000 * 109.46575 * 299.99501 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 2.0059 1.7565 -1.0196 5 6 1.1186 2.2462 0.8585 6 1 1.0465 2.0621 1.9202 7 6 0.4085 3.2814 0.2885 8 7 0.4168 3.4442 -1.0165 9 14 -0.5653 4.4526 1.3698 10 1 0.3537 5.1287 2.3204 11 1 -1.2351 5.4697 0.5199 12 1 -1.5893 3.6904 2.1285 13 6 3.3981 1.3710 0.5513 14 6 3.7253 0.5418 1.6077 15 6 5.0130 0.5382 2.1105 16 6 5.9712 1.3707 1.5627 17 6 5.6426 2.2037 0.5097 18 6 4.3560 2.2040 0.0040 19 6 1.9955 -0.7660 -1.1375 20 6 1.5116 -0.1353 -2.4448 21 6 3.5249 -0.7501 -1.0991 22 6 1.4982 -2.2105 -1.0535 23 1 -0.3633 -1.0275 -0.0172 24 1 -0.3632 0.4989 0.8985 25 1 -0.3633 0.5286 -0.8812 26 1 -0.0825 4.1728 -1.4175 27 1 2.9757 -0.1056 2.0383 28 1 5.2698 -0.1129 2.9330 29 1 6.9765 1.3699 1.9574 30 1 6.3910 2.8543 0.0820 31 1 4.0992 2.8552 -0.8184 32 1 1.8277 0.9070 -2.4841 33 1 1.9382 -0.6765 -3.2891 34 1 0.4238 -0.1871 -2.4923 35 1 3.8697 -1.1994 -0.1678 36 1 3.9155 -1.3181 -1.9434 37 1 3.8791 0.2791 -1.1590 38 1 0.4087 -2.2220 -1.0809 39 1 1.8886 -2.7788 -1.8978 40 1 1.8430 -2.6598 -0.1222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382042034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:26 Heat of formation + Delta-G solvation = 19.116584 kcal Electronic energy + Delta-G solvation = -19303.601187 eV Core-core repulsion = 16696.864708 eV Total energy + Delta-G solvation = -2606.736479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77885 -38.80018 -35.34051 -33.09874 -32.11673 -31.47338 -28.55456 -28.02141 -27.84969 -26.09836 -23.96794 -23.07667 -21.66029 -19.23294 -18.49731 -17.46040 -16.71375 -16.45919 -15.80779 -15.68090 -15.14397 -15.07955 -14.46839 -14.37882 -14.00688 -13.81545 -13.57992 -13.14375 -13.07565 -12.84814 -12.75020 -12.60850 -12.49172 -12.32400 -12.17361 -11.94228 -11.76084 -11.63426 -11.37582 -11.14501 -11.03655 -10.64446 -9.50842 -9.10683 -8.68244 -8.13018 -6.22125 0.77561 0.85476 1.38994 1.39727 1.46785 2.39326 3.03417 3.30806 3.58066 4.11607 4.22654 4.31216 4.35669 4.39880 4.51966 4.61811 4.73085 4.78988 4.84423 4.93671 4.99064 5.03628 5.08108 5.08951 5.12499 5.21736 5.27552 5.34398 5.43268 5.45550 5.54290 5.59304 5.66963 5.75268 5.85425 5.94696 6.10320 6.18916 6.46630 6.59178 6.96696 7.00490 7.42749 8.89671 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.011493 C = 0.008032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.898772 B = 2435.629777 C = 3485.432371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.527 5.527 3 C 0.221 3.779 4 H 0.034 0.966 5 C -0.505 4.505 6 H 0.045 0.955 7 C 0.028 3.972 8 N -0.914 5.914 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.270 1.270 13 C -0.028 4.028 14 C -0.116 4.116 15 C -0.126 4.126 16 C -0.147 4.147 17 C -0.125 4.125 18 C -0.154 4.154 19 C 0.094 3.906 20 C -0.164 4.164 21 C -0.136 4.136 22 C -0.127 4.127 23 H 0.063 0.937 24 H 0.050 0.950 25 H -0.001 1.001 26 H 0.261 0.739 27 H 0.112 0.888 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.485 -7.650 1.039 10.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.251 5.251 3 C 0.115 3.885 4 H 0.052 0.948 5 C -0.544 4.544 6 H 0.063 0.937 7 C -0.172 4.172 8 N -0.553 5.553 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.195 1.195 13 C -0.029 4.029 14 C -0.135 4.135 15 C -0.144 4.144 16 C -0.165 4.165 17 C -0.142 4.142 18 C -0.173 4.173 19 C 0.004 3.996 20 C -0.223 4.223 21 C -0.193 4.193 22 C -0.185 4.185 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.018 0.982 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.155 0.845 29 H 0.160 0.840 30 H 0.150 0.850 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.560 -7.772 1.324 10.256 hybrid contribution -1.214 1.616 -0.519 2.087 sum 5.345 -6.156 0.805 8.193 Atomic orbital electron populations 1.21902 0.88822 0.98616 0.99592 1.62501 1.07065 1.15402 1.40177 1.18466 0.88329 0.85476 0.96215 0.94786 1.21054 1.25836 1.13435 0.94069 0.93680 1.25562 0.97092 0.98724 0.95842 1.70007 1.42878 1.31916 1.10475 0.85819 0.79050 0.79059 0.79022 1.20128 1.21079 1.19485 1.20283 0.95151 0.93035 0.94392 1.20954 0.96527 0.99366 0.96635 1.21374 0.93063 0.99687 1.00250 1.21223 1.00170 0.97610 0.97473 1.21210 0.95568 0.99837 0.97633 1.20973 0.94377 1.00461 1.01453 1.21156 0.95254 0.94563 0.88635 1.22312 1.00478 1.00378 0.99154 1.22108 0.94148 1.01642 1.01390 1.21809 1.00710 0.93848 1.02100 0.91895 0.93083 0.98219 0.92942 0.86946 0.84518 0.83970 0.85030 0.89153 0.94826 0.91608 0.93948 0.92272 0.92089 0.93253 0.92927 0.91284 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.55 8.06 127.69 1.03 3.58 16 2 N -0.53 -22.51 3.70 -856.29 -3.17 -25.67 16 3 C 0.22 10.74 1.71 43.43 0.07 10.82 16 4 H 0.03 1.88 4.41 -2.39 -0.01 1.87 16 5 C -0.51 -27.07 6.09 25.60 0.16 -26.91 16 6 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 7 C 0.03 1.53 5.45 84.65 0.46 1.99 16 8 N -0.91 -51.63 12.63 21.45 0.27 -51.36 16 9 Si 0.94 43.49 29.54 68.60 2.03 45.52 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 C -0.03 -1.21 2.43 -19.87 -0.05 -1.26 16 14 C -0.12 -4.54 7.63 22.27 0.17 -4.37 16 15 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 16 C -0.15 -4.43 10.05 22.27 0.22 -4.20 16 17 C -0.12 -4.22 10.05 22.27 0.22 -3.99 16 18 C -0.15 -6.43 8.49 22.27 0.19 -6.24 16 19 C 0.09 3.43 0.71 3.53 0.00 3.43 16 20 C -0.16 -6.35 7.82 71.98 0.56 -5.78 16 21 C -0.14 -4.73 7.10 71.98 0.51 -4.22 16 22 C -0.13 -3.77 8.24 71.98 0.59 -3.18 16 23 H 0.06 2.31 6.04 -2.39 -0.01 2.29 16 24 H 0.05 2.38 6.73 -2.39 -0.02 2.37 16 25 H 0.00 -0.04 6.64 -2.39 -0.02 -0.06 16 26 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 27 H 0.11 4.52 7.66 -2.91 -0.02 4.50 16 28 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 30 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.09 4.06 8.05 -2.91 -0.02 4.03 16 32 H 0.03 1.53 6.06 -2.39 -0.01 1.51 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.68 6.66 -2.39 -0.02 1.66 16 35 H 0.06 2.03 6.87 -2.39 -0.02 2.01 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.94 4.53 -2.38 -0.01 1.93 16 38 H 0.05 1.55 6.29 -2.39 -0.02 1.53 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -58.38 303.88 4.51 -53.88 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 1.00 Total: 21.78 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 4.37 Total: -44.15 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -2.90 Total: -77.03 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -58.38 4.51 -53.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382042034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.992 kcal (2) G-P(sol) polarization free energy of solvation -58.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds