Wall clock time and date at job start Mon Mar 30 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47340 * 2 1 4 4 H 1.08997 * 109.46956 * 303.27902 * 3 2 1 5 5 C 1.50703 * 109.47476 * 183.27937 * 3 2 1 6 6 H 1.07996 * 119.99805 * 240.00141 * 5 3 2 7 7 C 1.37878 * 119.99864 * 59.99534 * 5 3 2 8 8 N 1.31518 * 119.99702 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99742 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47254 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46798 * 120.00446 * 9 7 5 12 12 H 1.48499 * 109.47045 * 240.00149 * 9 7 5 13 13 N 1.46903 * 109.47166 * 63.27667 * 3 2 1 14 14 C 1.46898 * 110.99750 * 62.91153 * 13 3 2 15 15 C 1.46896 * 111.00050 * 186.86263 * 13 3 2 16 16 H 1.08994 * 109.47732 * 295.92650 * 15 13 3 17 17 C 1.53000 * 109.47052 * 55.92641 * 15 13 3 18 18 C 1.50701 * 109.47250 * 175.92349 * 15 13 3 19 19 C 1.38238 * 119.99850 * 319.72997 * 18 15 13 20 20 C 1.38233 * 119.99734 * 179.80488 * 19 18 15 21 21 C 1.38239 * 120.00036 * 0.40138 * 20 19 18 22 22 C 1.38235 * 120.00208 * 359.85459 * 21 20 19 23 23 C 1.38233 * 119.99585 * 359.95463 * 22 21 20 24 24 H 1.09004 * 109.47289 * 174.79591 * 1 2 3 25 25 H 1.09003 * 109.46890 * 54.79900 * 1 2 3 26 26 H 1.09003 * 109.47369 * 294.79347 * 1 2 3 27 27 H 1.09007 * 109.46951 * 119.99713 * 2 1 3 28 28 H 1.08997 * 109.47544 * 239.99832 * 2 1 3 29 29 H 0.96998 * 119.99294 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47290 * 60.00299 * 14 13 3 31 31 H 1.09004 * 109.47031 * 180.02562 * 14 13 3 32 32 H 1.09001 * 109.47521 * 300.00221 * 14 13 3 33 33 H 1.09002 * 109.47351 * 53.29217 * 17 15 13 34 34 H 1.09001 * 109.47533 * 173.28846 * 17 15 13 35 35 H 1.09001 * 109.47404 * 293.29323 * 17 15 13 36 36 H 1.07993 * 120.00161 * 359.97438 * 19 18 15 37 37 H 1.08002 * 120.00340 * 180.23253 * 20 19 18 38 38 H 1.08004 * 119.99858 * 179.83347 * 21 20 19 39 39 H 1.07995 * 120.00237 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99644 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6295 1.9729 -0.8591 5 6 3.5448 1.4432 -0.0813 6 1 4.1279 1.8956 0.7072 7 6 4.1771 0.8663 -1.1622 8 7 3.4669 0.3158 -2.1225 9 14 6.0424 0.8680 -1.2633 10 1 6.6024 1.5450 -0.0661 11 1 6.5364 -0.5314 -1.3164 12 1 6.4711 1.5911 -2.4874 13 7 1.6161 2.1117 1.2371 14 6 2.2078 1.4641 2.4153 15 6 1.9465 3.5426 1.2013 16 1 3.0289 3.6648 1.1627 17 6 1.3168 4.1806 -0.0386 18 6 1.4091 4.2134 2.4392 19 6 0.1639 3.8656 2.9285 20 6 -0.3273 4.4780 4.0663 21 6 0.4231 5.4441 4.7100 22 6 1.6661 5.7957 4.2177 23 6 2.1589 5.1805 3.0822 24 1 -0.3634 -1.0234 -0.0932 25 1 -0.3633 0.5924 -0.8398 26 1 -0.3634 0.4310 0.9329 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 3.9118 -0.0897 -2.8831 30 1 3.2948 1.5103 2.3479 31 1 1.8772 1.9791 3.3174 32 1 1.8902 0.4221 2.4552 33 1 0.2504 3.9561 -0.0609 34 1 1.4600 5.2606 -0.0040 35 1 1.7913 3.7797 -0.9343 36 1 -0.4240 3.1135 2.4235 37 1 -1.2986 4.2036 4.4508 38 1 0.0381 5.9245 5.5974 39 1 2.2521 6.5508 4.7203 40 1 3.1302 5.4549 2.6977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383901470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:08 Heat of formation + Delta-G solvation = 23.131783 kcal Electronic energy + Delta-G solvation = -18704.392541 eV Core-core repulsion = 16097.830174 eV Total energy + Delta-G solvation = -2606.562367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.28654 -37.16505 -33.53078 -31.75421 -30.61096 -30.25286 -28.96860 -26.68881 -24.24909 -23.48704 -22.38260 -22.05631 -19.92951 -18.63274 -16.57359 -16.11176 -15.45093 -14.94472 -14.63887 -14.13669 -13.63467 -13.46899 -13.00255 -12.86689 -12.70184 -12.37622 -11.96050 -11.85485 -11.53737 -11.28336 -11.11574 -10.88259 -10.78285 -10.72560 -10.61759 -10.47953 -10.16047 -9.86704 -9.64565 -9.42504 -9.02269 -8.59205 -8.35242 -8.27381 -7.09827 -5.98320 -4.11083 1.69616 1.74395 3.25037 3.34092 3.37175 4.13424 4.39679 5.00227 5.18396 5.25073 5.29140 5.33095 5.48954 5.85156 5.92007 6.05522 6.08142 6.19948 6.31724 6.33646 6.41220 6.46135 6.48293 6.59870 6.68964 6.72050 6.79325 6.82276 6.87791 6.91556 7.09133 7.13823 7.22324 7.35745 7.38776 7.65483 7.77770 8.01306 8.18364 8.34234 8.49451 8.99420 9.56220 11.00674 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.007077 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.198195 B = 3955.428228 C = 4544.575402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.209 3.791 4 H 0.047 0.953 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.529 5.529 14 C 0.032 3.968 15 C 0.123 3.877 16 H 0.051 0.949 17 C -0.134 4.134 18 C -0.060 4.060 19 C -0.091 4.091 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.123 4.123 24 H 0.024 0.976 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.091 0.909 29 H 0.260 0.740 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 6.939 8.679 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.103 3.897 4 H 0.064 0.936 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.253 5.253 14 C -0.117 4.117 15 C 0.014 3.986 16 H 0.069 0.931 17 C -0.192 4.192 18 C -0.060 4.060 19 C -0.110 4.110 20 C -0.147 4.147 21 C -0.153 4.153 22 C -0.145 4.145 23 C -0.141 4.141 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.754 6.792 8.521 12.323 hybrid contribution 2.080 -0.008 -0.113 2.083 sum -3.674 6.784 8.409 11.412 Atomic orbital electron populations 1.21693 0.98894 0.98299 1.00468 1.21612 0.92161 0.99289 1.01971 1.19382 0.92736 0.90941 0.86625 0.93568 1.21767 0.92885 1.37359 1.05915 0.92622 1.24889 0.97735 0.95111 0.95642 1.69885 1.34736 1.38048 1.09725 0.86664 0.86484 0.77714 0.77890 1.20021 1.21043 1.21046 1.62558 1.57927 1.00205 1.04605 1.22202 0.97971 0.98916 0.92618 1.20361 0.97625 0.89630 0.90965 0.93124 1.21785 1.00967 0.98505 0.97928 1.20169 0.94271 0.95211 0.96366 1.21123 0.95592 0.98809 0.95445 1.21148 0.99706 0.97359 0.96534 1.21014 0.95304 0.98857 1.00156 1.21001 0.96234 1.00356 0.96892 1.21076 0.99837 0.97256 0.95941 0.95711 0.94190 0.93608 0.94892 0.89059 0.92999 0.95219 0.94007 0.92266 0.92628 0.93740 0.91012 0.85157 0.86739 0.86976 0.86833 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.72 37.16 0.36 -2.36 16 2 C -0.11 -2.60 5.05 -26.74 -0.13 -2.74 16 3 C 0.21 4.95 1.44 -68.86 -0.10 4.85 16 4 H 0.05 1.20 6.00 -51.93 -0.31 0.89 16 5 C -0.54 -14.08 7.12 -34.44 -0.25 -14.32 16 6 H 0.06 1.48 5.81 -52.49 -0.30 1.18 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -24.46 11.30 55.43 0.63 -23.83 16 9 Si 0.88 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.53 -10.77 3.39 -229.69 -0.78 -11.55 16 14 C 0.03 0.63 8.60 60.06 0.52 1.14 16 15 C 0.12 2.34 1.99 -68.87 -0.14 2.20 16 16 H 0.05 1.07 6.89 -51.93 -0.36 0.71 16 17 C -0.13 -2.44 8.59 37.16 0.32 -2.12 16 18 C -0.06 -0.99 3.72 -104.62 -0.39 -1.38 16 19 C -0.09 -1.43 8.46 -39.58 -0.33 -1.76 16 20 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 21 C -0.14 -1.73 10.05 -39.58 -0.40 -2.12 16 22 C -0.13 -1.69 10.05 -39.58 -0.40 -2.08 16 23 C -0.12 -1.86 9.67 -39.58 -0.38 -2.25 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.87 7.85 -51.93 -0.41 0.46 16 27 H 0.03 0.76 6.31 -51.93 -0.33 0.43 16 28 H 0.09 2.39 5.99 -51.93 -0.31 2.08 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.03 0.64 6.29 -51.93 -0.33 0.31 16 31 H 0.04 0.76 6.39 -51.93 -0.33 0.43 16 32 H 0.06 1.17 6.31 -51.93 -0.33 0.85 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.46 6.60 -51.93 -0.34 1.12 16 36 H 0.13 2.11 7.73 -52.49 -0.41 1.70 16 37 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.67 8.04 -52.49 -0.42 1.25 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -26.73 310.59 -8.58 -35.31 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.27 Total: 2.82 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -1.81 Total: -23.36 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.15 Total: -35.38 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.73 -8.58 -35.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383901470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.441 kcal (2) G-P(sol) polarization free energy of solvation -26.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds