Wall clock time and date at job start Mon Mar 30 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47340 * 2 1 4 4 H 1.08997 * 109.46956 * 303.27902 * 3 2 1 5 5 C 1.50703 * 109.47476 * 183.27937 * 3 2 1 6 6 H 1.07996 * 119.99805 * 240.00141 * 5 3 2 7 7 C 1.37878 * 119.99864 * 59.99534 * 5 3 2 8 8 N 1.31518 * 119.99702 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99742 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47254 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46798 * 120.00446 * 9 7 5 12 12 H 1.48499 * 109.47045 * 240.00149 * 9 7 5 13 13 N 1.46903 * 109.47166 * 63.27667 * 3 2 1 14 14 C 1.46898 * 110.99750 * 62.91153 * 13 3 2 15 15 C 1.46896 * 111.00050 * 186.86263 * 13 3 2 16 16 H 1.08994 * 109.47732 * 295.92650 * 15 13 3 17 17 C 1.53000 * 109.47052 * 55.92641 * 15 13 3 18 18 C 1.50701 * 109.47250 * 175.92349 * 15 13 3 19 19 C 1.38238 * 119.99850 * 319.72997 * 18 15 13 20 20 C 1.38233 * 119.99734 * 179.80488 * 19 18 15 21 21 C 1.38239 * 120.00036 * 0.40138 * 20 19 18 22 22 C 1.38235 * 120.00208 * 359.85459 * 21 20 19 23 23 C 1.38233 * 119.99585 * 359.95463 * 22 21 20 24 24 H 1.09004 * 109.47289 * 174.79591 * 1 2 3 25 25 H 1.09003 * 109.46890 * 54.79900 * 1 2 3 26 26 H 1.09003 * 109.47369 * 294.79347 * 1 2 3 27 27 H 1.09007 * 109.46951 * 119.99713 * 2 1 3 28 28 H 1.08997 * 109.47544 * 239.99832 * 2 1 3 29 29 H 0.96998 * 119.99294 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47290 * 60.00299 * 14 13 3 31 31 H 1.09004 * 109.47031 * 180.02562 * 14 13 3 32 32 H 1.09001 * 109.47521 * 300.00221 * 14 13 3 33 33 H 1.09002 * 109.47351 * 53.29217 * 17 15 13 34 34 H 1.09001 * 109.47533 * 173.28846 * 17 15 13 35 35 H 1.09001 * 109.47404 * 293.29323 * 17 15 13 36 36 H 1.07993 * 120.00161 * 359.97438 * 19 18 15 37 37 H 1.08002 * 120.00340 * 180.23253 * 20 19 18 38 38 H 1.08004 * 119.99858 * 179.83347 * 21 20 19 39 39 H 1.07995 * 120.00237 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99644 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6295 1.9729 -0.8591 5 6 3.5448 1.4432 -0.0813 6 1 4.1279 1.8956 0.7072 7 6 4.1771 0.8663 -1.1622 8 7 3.4669 0.3158 -2.1225 9 14 6.0424 0.8680 -1.2633 10 1 6.6024 1.5450 -0.0661 11 1 6.5364 -0.5314 -1.3164 12 1 6.4711 1.5911 -2.4874 13 7 1.6161 2.1117 1.2371 14 6 2.2078 1.4641 2.4153 15 6 1.9465 3.5426 1.2013 16 1 3.0289 3.6648 1.1627 17 6 1.3168 4.1806 -0.0386 18 6 1.4091 4.2134 2.4392 19 6 0.1639 3.8656 2.9285 20 6 -0.3273 4.4780 4.0663 21 6 0.4231 5.4441 4.7100 22 6 1.6661 5.7957 4.2177 23 6 2.1589 5.1805 3.0822 24 1 -0.3634 -1.0234 -0.0932 25 1 -0.3633 0.5924 -0.8398 26 1 -0.3634 0.4310 0.9329 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 3.9118 -0.0897 -2.8831 30 1 3.2948 1.5103 2.3479 31 1 1.8772 1.9791 3.3174 32 1 1.8902 0.4221 2.4552 33 1 0.2504 3.9561 -0.0609 34 1 1.4600 5.2606 -0.0040 35 1 1.7913 3.7797 -0.9343 36 1 -0.4240 3.1135 2.4235 37 1 -1.2986 4.2036 4.4508 38 1 0.0381 5.9245 5.5974 39 1 2.2521 6.5508 4.7203 40 1 3.1302 5.4549 2.6977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383901470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:08 Heat of formation + Delta-G solvation = 10.360117 kcal Electronic energy + Delta-G solvation = -18704.946362 eV Core-core repulsion = 16097.830174 eV Total energy + Delta-G solvation = -2607.116188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58548 -38.70852 -35.24509 -33.61499 -31.94471 -31.57781 -30.35064 -28.56709 -26.01824 -25.07848 -23.81537 -23.25285 -21.39239 -20.41780 -18.28637 -17.52375 -17.13902 -16.43728 -16.12227 -15.67618 -15.03955 -15.02365 -14.57137 -14.30224 -14.06735 -13.99190 -13.48171 -13.26642 -13.11831 -13.03018 -12.85898 -12.58193 -12.46142 -12.26530 -12.23081 -11.93963 -11.73499 -11.55406 -11.49293 -11.21254 -10.88538 -10.38127 -9.68470 -9.45420 -8.89741 -8.01175 -6.22456 0.57936 0.64461 1.33924 1.37757 1.46340 2.40087 3.01048 3.16981 3.44959 3.96120 4.17284 4.29208 4.41343 4.51446 4.53383 4.55625 4.70220 4.76618 4.78690 4.83226 4.88627 4.92892 5.00801 5.14323 5.16510 5.26400 5.30629 5.34096 5.36338 5.46571 5.53703 5.65470 5.69823 5.74222 5.82151 5.95294 6.10539 6.24012 6.26813 6.43867 6.71026 6.99545 7.47635 8.93403 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.007077 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.198195 B = 3955.428228 C = 4544.575402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 C 0.216 3.784 4 H 0.021 0.979 5 C -0.546 4.546 6 H 0.044 0.956 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.940 3.060 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.520 5.520 14 C 0.041 3.959 15 C 0.126 3.874 16 H 0.022 0.978 17 C -0.126 4.126 18 C -0.078 4.078 19 C -0.103 4.103 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.136 4.136 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.260 0.740 30 H 0.007 0.993 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.084 8.042 10.790 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.146 4.146 3 C 0.109 3.891 4 H 0.039 0.961 5 C -0.585 4.585 6 H 0.063 0.937 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.243 5.243 14 C -0.107 4.107 15 C 0.017 3.983 16 H 0.040 0.960 17 C -0.183 4.183 18 C -0.079 4.079 19 C -0.122 4.122 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.155 4.155 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.580 7.902 10.641 14.797 hybrid contribution 2.310 -0.282 -0.700 2.430 sum -4.270 7.620 9.941 13.233 Atomic orbital electron populations 1.21548 0.96185 0.99520 1.00836 1.21467 0.94545 0.98406 1.00227 1.19150 0.91312 0.91290 0.87317 0.96093 1.21980 0.94314 1.36753 1.05469 0.93747 1.25527 1.01377 0.95133 0.95567 1.69998 1.36026 1.38746 1.10114 0.85789 0.82169 0.77654 0.77703 1.20042 1.20689 1.20706 1.62510 1.57379 1.00981 1.03437 1.22126 0.96401 0.99108 0.93083 1.20304 0.96109 0.88900 0.92967 0.96002 1.21685 1.00739 0.99505 0.96369 1.19920 0.95382 0.96565 0.96007 1.21094 0.95160 0.99344 0.96567 1.21439 1.00759 0.96872 0.95462 1.21433 0.94640 0.97909 1.00653 1.21326 0.96754 1.00252 0.95898 1.21188 0.99929 0.97438 0.96919 0.93876 0.94685 0.92441 0.95238 0.92068 0.93023 0.97491 0.92073 0.92316 0.92153 0.91798 0.94012 0.86152 0.84218 0.83659 0.84162 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.72 71.98 0.70 -4.17 16 2 C -0.11 -5.11 5.05 30.59 0.15 -4.95 16 3 C 0.22 10.56 1.44 44.17 0.06 10.63 16 4 H 0.02 1.14 6.00 -2.39 -0.01 1.13 16 5 C -0.55 -29.38 7.12 25.60 0.18 -29.20 16 6 H 0.04 2.45 5.81 -2.91 -0.02 2.43 16 7 C 0.02 1.30 5.30 84.65 0.45 1.75 16 8 N -0.91 -51.58 11.30 21.45 0.24 -51.34 16 9 Si 0.94 43.84 29.54 68.60 2.03 45.87 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.52 -21.49 3.39 -880.61 -2.99 -24.48 16 14 C 0.04 1.65 8.60 127.69 1.10 2.75 16 15 C 0.13 4.88 1.99 44.17 0.09 4.97 16 16 H 0.02 0.97 6.89 -2.39 -0.02 0.95 16 17 C -0.13 -4.67 8.59 71.98 0.62 -4.05 16 18 C -0.08 -2.55 3.72 -19.86 -0.07 -2.62 16 19 C -0.10 -3.05 8.46 22.27 0.19 -2.86 16 20 C -0.13 -3.02 10.05 22.27 0.22 -2.79 16 21 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 22 C -0.12 -2.90 10.05 22.27 0.22 -2.67 16 23 C -0.14 -3.95 9.67 22.27 0.22 -3.73 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 2.11 7.85 -2.39 -0.02 2.09 16 27 H 0.03 1.37 6.31 -2.38 -0.02 1.36 16 28 H 0.06 3.28 5.99 -2.39 -0.01 3.27 16 29 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.01 0.29 6.29 -2.39 -0.02 0.28 16 31 H 0.06 2.19 6.39 -2.39 -0.02 2.17 16 32 H 0.06 2.32 6.31 -2.39 -0.02 2.30 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.77 6.60 -2.39 -0.02 1.76 16 36 H 0.12 3.74 7.73 -2.91 -0.02 3.72 16 37 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.11 3.25 8.04 -2.91 -0.02 3.23 16 Total: -1.00 -58.24 310.59 4.63 -53.60 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.00 Total: 15.83 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 4.35 Total: -39.48 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -2.74 Total: -75.82 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -58.24 4.63 -53.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383901470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.964 kcal (2) G-P(sol) polarization free energy of solvation -58.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds