Wall clock time and date at job start Mon Mar 30 2020 06:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47046 * 2 1 4 4 H 1.09003 * 109.47407 * 56.73735 * 3 2 1 5 5 C 1.50697 * 109.47077 * 176.73607 * 3 2 1 6 6 H 1.07999 * 120.00000 * 119.99750 * 5 3 2 7 7 C 1.37879 * 120.00082 * 300.00284 * 5 3 2 8 8 N 1.31514 * 120.00078 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00131 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47195 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47325 * 119.99865 * 9 7 5 12 12 H 1.48496 * 109.47046 * 239.99823 * 9 7 5 13 13 N 1.46904 * 109.47278 * 296.73459 * 3 2 1 14 14 C 1.46902 * 110.99932 * 319.75397 * 13 3 2 15 15 C 1.46907 * 110.99632 * 83.70385 * 13 3 2 16 16 H 1.08995 * 109.47305 * 304.66254 * 15 13 3 17 17 C 1.53002 * 109.46974 * 64.66752 * 15 13 3 18 18 C 1.50704 * 109.46623 * 184.66319 * 15 13 3 19 19 C 1.38236 * 120.00157 * 319.72568 * 18 15 13 20 20 C 1.38236 * 119.99795 * 180.34750 * 19 18 15 21 21 C 1.38234 * 119.99983 * 359.88589 * 20 19 18 22 22 C 1.38235 * 120.00021 * 0.09451 * 21 20 19 23 23 C 1.38229 * 120.00008 * 359.96943 * 22 21 20 24 24 H 1.09001 * 109.47181 * 74.74442 * 1 2 3 25 25 H 1.08997 * 109.46968 * 194.74792 * 1 2 3 26 26 H 1.08998 * 109.47111 * 314.74858 * 1 2 3 27 27 H 1.08994 * 109.46733 * 240.00145 * 2 1 3 28 28 H 1.09000 * 109.47108 * 120.00078 * 2 1 3 29 29 H 0.96997 * 120.00262 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.46963 * 183.94853 * 14 13 3 31 31 H 1.08997 * 109.46793 * 303.95369 * 14 13 3 32 32 H 1.09001 * 109.47236 * 63.95079 * 14 13 3 33 33 H 1.09000 * 109.47020 * 60.42064 * 17 15 13 34 34 H 1.08997 * 109.46817 * 180.42293 * 17 15 13 35 35 H 1.09000 * 109.46591 * 300.42408 * 17 15 13 36 36 H 1.08003 * 120.00028 * 0.27941 * 19 18 15 37 37 H 1.07996 * 119.99723 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.99564 * 180.11090 * 21 20 19 39 39 H 1.08004 * 119.99762 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.99688 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6297 1.9730 0.8593 5 6 3.5448 1.4433 0.0809 6 1 4.1278 1.8957 -0.7077 7 6 4.1774 0.8663 1.1616 8 7 3.4676 0.3157 2.1221 9 14 6.0427 0.8666 1.2615 10 1 6.6026 1.5429 0.0637 11 1 6.4728 1.5898 2.4851 12 1 6.5358 -0.5331 1.3149 13 7 1.6158 2.1119 -1.2370 14 6 1.7329 1.2098 -2.3905 15 6 0.2474 2.6314 -1.1117 16 1 -0.4240 1.8216 -0.8263 17 6 0.2127 3.7240 -0.0412 18 6 -0.1938 3.2079 -2.4323 19 6 0.6929 3.9438 -3.1961 20 6 0.2859 4.4786 -4.4041 21 6 -1.0068 4.2756 -4.8494 22 6 -1.8933 3.5394 -4.0859 23 6 -1.4868 3.0057 -2.8773 24 1 -0.3633 0.2704 -0.9915 25 1 -0.3633 -0.9938 0.2616 26 1 -0.3633 0.7235 0.7298 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9126 -0.0899 2.8826 30 1 1.4797 1.7511 -3.3021 31 1 2.7558 0.8397 -2.4598 32 1 1.0501 0.3695 -2.2654 33 1 0.8784 4.5372 -0.3303 34 1 -0.8041 4.1042 0.0570 35 1 0.5392 3.3088 0.9123 36 1 1.7031 4.1017 -2.8485 37 1 0.9788 5.0531 -5.0010 38 1 -1.3241 4.6920 -5.7941 39 1 -2.9035 3.3811 -4.4337 40 1 -2.1794 2.4302 -2.2809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383901475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:11 Heat of formation + Delta-G solvation = 37.536102 kcal Electronic energy + Delta-G solvation = -18768.420825 eV Core-core repulsion = 16162.483077 eV Total energy + Delta-G solvation = -2605.937749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.52574 -37.46318 -33.43317 -31.70927 -30.75614 -30.05474 -29.11088 -27.15881 -24.33390 -23.52147 -22.35490 -22.19691 -19.92210 -18.69027 -16.74188 -16.09024 -15.59580 -14.88345 -14.60553 -14.14252 -13.90102 -13.76222 -13.12179 -13.03123 -12.69254 -12.38694 -11.92672 -11.73475 -11.53988 -11.29182 -11.11274 -10.96056 -10.82946 -10.75059 -10.70143 -10.45551 -10.29744 -10.09933 -9.71825 -9.47587 -8.89300 -8.62841 -8.32937 -8.28246 -6.97687 -5.97249 -3.99668 1.64005 1.68997 3.31958 3.40157 3.45049 4.07507 4.44638 4.96199 5.11881 5.22849 5.23594 5.33755 5.43303 5.78134 5.83790 5.93486 5.97311 6.08213 6.14182 6.15045 6.26233 6.29598 6.36891 6.44289 6.47393 6.54689 6.71787 6.76183 6.77502 6.82263 6.88428 7.01799 7.06245 7.28956 7.30449 7.53157 7.75254 7.91413 8.25521 8.44546 8.64563 9.07675 9.64955 11.09329 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.032102 B = 0.006374 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.997814 B = 4391.589240 C = 4771.981533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.153 4.153 3 C 0.213 3.787 4 H 0.044 0.956 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.523 5.523 14 C 0.029 3.971 15 C 0.093 3.907 16 H 0.064 0.936 17 C -0.136 4.136 18 C -0.061 4.061 19 C -0.092 4.092 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.124 4.124 24 H 0.042 0.958 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.258 0.742 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.133 0.867 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.740 4.725 -8.995 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.192 4.192 3 C 0.107 3.893 4 H 0.061 0.939 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.247 5.247 14 C -0.119 4.119 15 C -0.016 4.016 16 H 0.081 0.919 17 C -0.193 4.193 18 C -0.061 4.061 19 C -0.110 4.110 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.142 4.142 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.151 0.849 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.385 5.040 -8.889 13.218 hybrid contribution 0.420 -0.828 0.224 0.955 sum -7.965 4.212 -8.665 12.501 Atomic orbital electron populations 1.22173 0.99827 0.99584 0.99486 1.22255 0.91367 1.02482 1.03122 1.19439 0.95274 0.88401 0.86211 0.93867 1.21175 0.90833 1.35345 1.05578 0.92006 1.24923 0.98125 0.95626 0.95752 1.69882 1.34751 1.39006 1.09971 0.86504 0.85900 0.77461 0.77905 1.19804 1.21187 1.21298 1.62400 1.18688 1.37860 1.05774 1.22340 1.01340 0.94835 0.93422 1.21047 0.92642 0.96848 0.91027 0.91872 1.21818 1.00149 0.98472 0.98901 1.20089 0.93159 0.96538 0.96347 1.21196 1.00349 0.95737 0.93720 1.21164 0.96027 1.00569 0.96887 1.21029 0.94230 1.00197 0.99719 1.20997 0.99245 0.99035 0.95227 1.21032 0.95958 1.00740 0.96489 0.93953 0.94827 0.93517 0.94089 0.88477 0.93171 0.93452 0.91499 0.96206 0.92252 0.93652 0.91394 0.84888 0.86612 0.86891 0.86783 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.04 37.16 0.30 -2.70 16 2 C -0.15 -3.54 4.70 -26.73 -0.13 -3.67 16 3 C 0.21 5.12 1.76 -68.86 -0.12 4.99 16 4 H 0.04 1.13 5.71 -51.93 -0.30 0.84 16 5 C -0.49 -13.18 8.28 -34.44 -0.29 -13.46 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 8 N -0.90 -25.10 11.30 55.43 0.63 -24.47 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.52 -10.81 3.86 -229.68 -0.89 -11.70 16 14 C 0.03 0.57 7.67 60.07 0.46 1.03 16 15 C 0.09 1.66 1.91 -68.86 -0.13 1.53 16 16 H 0.06 1.15 3.64 -51.93 -0.19 0.96 16 17 C -0.14 -2.38 9.13 37.16 0.34 -2.04 16 18 C -0.06 -0.98 3.77 -104.62 -0.39 -1.37 16 19 C -0.09 -1.44 7.70 -39.58 -0.30 -1.74 16 20 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 21 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 22 C -0.13 -1.62 10.05 -39.59 -0.40 -2.01 16 23 C -0.12 -1.77 9.67 -39.59 -0.38 -2.16 16 24 H 0.04 0.77 4.92 -51.93 -0.26 0.52 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.90 7.52 -51.93 -0.39 0.51 16 27 H 0.04 0.95 6.23 -51.93 -0.32 0.62 16 28 H 0.10 2.55 5.99 -51.93 -0.31 2.24 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.05 0.85 5.72 -51.93 -0.30 0.55 16 31 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 32 H 0.02 0.38 5.05 -51.93 -0.26 0.12 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.30 6.16 -51.93 -0.32 0.98 16 36 H 0.13 2.24 7.72 -52.48 -0.41 1.83 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.11 1.50 8.04 -52.48 -0.42 1.08 16 LS Contribution 303.20 15.07 4.57 4.57 Total: -1.00 -27.41 303.20 -8.60 -36.01 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.95 Total: 3.70 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -1.93 Total: -24.36 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.26 Total: -36.17 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.41 -8.60 -36.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383901475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.551 kcal (2) G-P(sol) polarization free energy of solvation -27.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds