Wall clock time and date at job start Mon Mar 30 2020 06:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47046 * 2 1 4 4 H 1.09003 * 109.47407 * 56.73735 * 3 2 1 5 5 C 1.50697 * 109.47077 * 176.73607 * 3 2 1 6 6 H 1.07999 * 120.00000 * 119.99750 * 5 3 2 7 7 C 1.37879 * 120.00082 * 300.00284 * 5 3 2 8 8 N 1.31514 * 120.00078 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00131 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47195 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47325 * 119.99865 * 9 7 5 12 12 H 1.48496 * 109.47046 * 239.99823 * 9 7 5 13 13 N 1.46904 * 109.47278 * 296.73459 * 3 2 1 14 14 C 1.46902 * 110.99932 * 319.75397 * 13 3 2 15 15 C 1.46907 * 110.99632 * 83.70385 * 13 3 2 16 16 H 1.08995 * 109.47305 * 304.66254 * 15 13 3 17 17 C 1.53002 * 109.46974 * 64.66752 * 15 13 3 18 18 C 1.50704 * 109.46623 * 184.66319 * 15 13 3 19 19 C 1.38236 * 120.00157 * 319.72568 * 18 15 13 20 20 C 1.38236 * 119.99795 * 180.34750 * 19 18 15 21 21 C 1.38234 * 119.99983 * 359.88589 * 20 19 18 22 22 C 1.38235 * 120.00021 * 0.09451 * 21 20 19 23 23 C 1.38229 * 120.00008 * 359.96943 * 22 21 20 24 24 H 1.09001 * 109.47181 * 74.74442 * 1 2 3 25 25 H 1.08997 * 109.46968 * 194.74792 * 1 2 3 26 26 H 1.08998 * 109.47111 * 314.74858 * 1 2 3 27 27 H 1.08994 * 109.46733 * 240.00145 * 2 1 3 28 28 H 1.09000 * 109.47108 * 120.00078 * 2 1 3 29 29 H 0.96997 * 120.00262 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.46963 * 183.94853 * 14 13 3 31 31 H 1.08997 * 109.46793 * 303.95369 * 14 13 3 32 32 H 1.09001 * 109.47236 * 63.95079 * 14 13 3 33 33 H 1.09000 * 109.47020 * 60.42064 * 17 15 13 34 34 H 1.08997 * 109.46817 * 180.42293 * 17 15 13 35 35 H 1.09000 * 109.46591 * 300.42408 * 17 15 13 36 36 H 1.08003 * 120.00028 * 0.27941 * 19 18 15 37 37 H 1.07996 * 119.99723 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.99564 * 180.11090 * 21 20 19 39 39 H 1.08004 * 119.99762 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.99688 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6297 1.9730 0.8593 5 6 3.5448 1.4433 0.0809 6 1 4.1278 1.8957 -0.7077 7 6 4.1774 0.8663 1.1616 8 7 3.4676 0.3157 2.1221 9 14 6.0427 0.8666 1.2615 10 1 6.6026 1.5429 0.0637 11 1 6.4728 1.5898 2.4851 12 1 6.5358 -0.5331 1.3149 13 7 1.6158 2.1119 -1.2370 14 6 1.7329 1.2098 -2.3905 15 6 0.2474 2.6314 -1.1117 16 1 -0.4240 1.8216 -0.8263 17 6 0.2127 3.7240 -0.0412 18 6 -0.1938 3.2079 -2.4323 19 6 0.6929 3.9438 -3.1961 20 6 0.2859 4.4786 -4.4041 21 6 -1.0068 4.2756 -4.8494 22 6 -1.8933 3.5394 -4.0859 23 6 -1.4868 3.0057 -2.8773 24 1 -0.3633 0.2704 -0.9915 25 1 -0.3633 -0.9938 0.2616 26 1 -0.3633 0.7235 0.7298 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9126 -0.0899 2.8826 30 1 1.4797 1.7511 -3.3021 31 1 2.7558 0.8397 -2.4598 32 1 1.0501 0.3695 -2.2654 33 1 0.8784 4.5372 -0.3303 34 1 -0.8041 4.1042 0.0570 35 1 0.5392 3.3088 0.9123 36 1 1.7031 4.1017 -2.8485 37 1 0.9788 5.0531 -5.0010 38 1 -1.3241 4.6920 -5.7941 39 1 -2.9035 3.3811 -4.4337 40 1 -2.1794 2.4302 -2.2809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383901475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:11 Heat of formation + Delta-G solvation = 23.492613 kcal Electronic energy + Delta-G solvation = -18769.029797 eV Core-core repulsion = 16162.483077 eV Total energy + Delta-G solvation = -2606.546720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83414 -38.90527 -35.17313 -33.46204 -32.03529 -31.44299 -30.39782 -29.02723 -26.03076 -25.18345 -23.73621 -23.32222 -21.42172 -20.32494 -18.45295 -17.51479 -17.16960 -16.43995 -16.08381 -15.68136 -15.37776 -15.13810 -14.66465 -14.29486 -14.08644 -13.77310 -13.45194 -13.20299 -13.12157 -12.98175 -12.79846 -12.69781 -12.44643 -12.30472 -12.21254 -11.99139 -11.85845 -11.75247 -11.49995 -11.16130 -10.84476 -10.35620 -9.68919 -9.44892 -8.63936 -8.05599 -6.14732 0.56825 0.62701 1.40751 1.43389 1.54561 2.45259 2.99653 3.22022 3.45091 3.90589 4.15650 4.28182 4.39509 4.40967 4.47412 4.49881 4.53977 4.58542 4.73161 4.74192 4.81496 4.83030 4.96593 5.03804 5.09099 5.13885 5.23837 5.27705 5.30492 5.39459 5.46286 5.63714 5.67565 5.73404 5.77302 5.87377 5.94757 6.24505 6.36201 6.62227 6.84028 6.99537 7.53847 8.99258 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.032102 B = 0.006374 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.997814 B = 4391.589240 C = 4771.981533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.146 4.146 3 C 0.219 3.781 4 H 0.018 0.982 5 C -0.506 4.506 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.919 5.919 9 Si 0.953 3.047 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.531 5.531 14 C 0.039 3.961 15 C 0.095 3.905 16 H 0.064 0.936 17 C -0.130 4.130 18 C -0.078 4.078 19 C -0.110 4.110 20 C -0.130 4.130 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.130 4.130 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.259 0.741 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.022 0.978 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.213 5.254 -10.892 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.185 4.185 3 C 0.112 3.888 4 H 0.036 0.964 5 C -0.545 4.545 6 H 0.067 0.933 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.255 5.255 14 C -0.109 4.109 15 C -0.013 4.013 16 H 0.081 0.919 17 C -0.188 4.188 18 C -0.079 4.079 19 C -0.129 4.129 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.149 4.149 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.864 5.575 -10.797 15.651 hybrid contribution 0.827 -0.932 0.748 1.453 sum -9.036 4.643 -10.049 14.290 Atomic orbital electron populations 1.22021 0.96841 1.00529 1.00424 1.22068 0.94021 1.01307 1.01146 1.19166 0.93779 0.88877 0.86943 0.96398 1.21442 0.92594 1.35197 1.05291 0.93314 1.25603 1.02053 0.95419 0.95529 1.70004 1.36156 1.39533 1.10320 0.85587 0.81218 0.77480 0.77792 1.19620 1.20834 1.20839 1.62264 1.21072 1.37544 1.04585 1.22235 1.00111 0.94872 0.93697 1.21030 0.90801 0.96780 0.92686 0.91860 1.21759 1.01350 0.98091 0.97580 1.19908 0.94371 0.97971 0.95631 1.21101 0.99529 0.97139 0.95092 1.21397 0.97165 1.00193 0.96067 1.21426 0.93418 0.99127 1.00648 1.21368 1.00671 0.97820 0.94247 1.21206 0.95210 1.01010 0.97432 0.92337 0.93308 0.93716 0.94606 0.91730 0.93185 0.91703 0.93543 0.95976 0.93068 0.91132 0.93853 0.87091 0.84780 0.83761 0.83791 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.04 71.98 0.58 -4.84 16 2 C -0.15 -6.89 4.70 30.60 0.14 -6.75 16 3 C 0.22 10.89 1.76 44.17 0.08 10.97 16 4 H 0.02 0.99 5.71 -2.39 -0.01 0.98 16 5 C -0.51 -28.10 8.28 25.60 0.21 -27.89 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.01 0.66 5.30 84.66 0.45 1.11 16 8 N -0.92 -52.85 11.30 21.45 0.24 -52.61 16 9 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.53 -22.36 3.86 -880.56 -3.40 -25.76 16 14 C 0.04 1.53 7.67 127.69 0.98 2.51 16 15 C 0.09 3.39 1.91 44.17 0.08 3.47 16 16 H 0.06 2.25 3.64 -2.39 -0.01 2.24 16 17 C -0.13 -4.61 9.13 71.98 0.66 -3.95 16 18 C -0.08 -2.42 3.77 -19.86 -0.07 -2.49 16 19 C -0.11 -3.35 7.70 22.27 0.17 -3.18 16 20 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 21 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 22 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 23 C -0.13 -3.37 9.67 22.27 0.22 -3.15 16 24 H 0.06 2.05 4.92 -2.39 -0.01 2.04 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 26 H 0.04 1.72 7.52 -2.39 -0.02 1.70 16 27 H 0.04 1.68 6.23 -2.39 -0.01 1.67 16 28 H 0.06 3.49 5.99 -2.39 -0.01 3.48 16 29 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.06 2.30 5.72 -2.39 -0.01 2.28 16 31 H 0.05 1.97 7.70 -2.39 -0.02 1.95 16 32 H 0.02 0.84 5.05 -2.39 -0.01 0.83 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.04 1.72 6.16 -2.39 -0.01 1.71 16 36 H 0.11 3.80 7.72 -2.91 -0.02 3.78 16 37 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 38 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 40 H 0.13 2.92 8.04 -2.91 -0.02 2.89 16 Total: -1.00 -59.91 303.20 4.05 -55.86 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.01 Total: 18.05 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 4.16 Total: -42.01 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -3.16 Total: -78.37 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -59.91 4.05 -55.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383901475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.352 kcal (2) G-P(sol) polarization free energy of solvation -59.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds