Wall clock time and date at job start Mon Mar 30 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46976 * 2 1 4 4 H 1.08998 * 109.47073 * 57.65023 * 3 2 1 5 5 C 1.50702 * 109.47079 * 177.64267 * 3 2 1 6 6 H 1.08002 * 120.00083 * 119.99917 * 5 3 2 7 7 C 1.37873 * 120.00176 * 300.00386 * 5 3 2 8 8 N 1.31514 * 120.00113 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99968 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46678 * 89.99962 * 9 7 5 11 11 H 1.48503 * 109.47054 * 209.99731 * 9 7 5 12 12 H 1.48494 * 109.47277 * 329.99732 * 9 7 5 13 13 N 1.46892 * 109.47361 * 297.64571 * 3 2 1 14 14 C 1.46910 * 110.99831 * 297.08495 * 13 3 2 15 15 C 1.46900 * 111.00220 * 173.12981 * 13 3 2 16 16 H 1.08998 * 109.47054 * 63.83350 * 15 13 3 17 17 C 1.52989 * 109.47059 * 303.83099 * 15 13 3 18 18 C 1.50700 * 109.47059 * 183.82774 * 15 13 3 19 19 C 1.38238 * 119.99844 * 39.73085 * 18 15 13 20 20 C 1.38237 * 119.99732 * 179.78728 * 19 18 15 21 21 C 1.38236 * 120.00175 * 0.43480 * 20 19 18 22 22 C 1.38231 * 119.99560 * 359.81793 * 21 20 19 23 23 C 1.38233 * 120.00028 * 219.99902 * 18 15 13 24 24 H 1.08994 * 109.46989 * 185.10534 * 1 2 3 25 25 H 1.09010 * 109.46972 * 305.10277 * 1 2 3 26 26 H 1.09002 * 109.47004 * 65.10072 * 1 2 3 27 27 H 1.08996 * 109.47318 * 239.99833 * 2 1 3 28 28 H 1.09000 * 109.47423 * 119.99351 * 2 1 3 29 29 H 0.97004 * 120.00008 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46817 * 59.99850 * 14 13 3 31 31 H 1.09002 * 109.46797 * 180.02562 * 14 13 3 32 32 H 1.08998 * 109.46907 * 299.99908 * 14 13 3 33 33 H 1.08998 * 109.47563 * 307.14904 * 17 15 13 34 34 H 1.09000 * 109.47228 * 67.15242 * 17 15 13 35 35 H 1.09000 * 109.47106 * 187.14917 * 17 15 13 36 36 H 1.08001 * 120.00206 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.00015 * 180.27542 * 20 19 18 38 38 H 1.07995 * 120.00145 * 179.83703 * 21 20 19 39 39 H 1.08008 * 119.99582 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.99953 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6426 1.9684 0.8682 5 6 3.5458 1.4430 0.0584 6 1 4.1170 1.8996 -0.7364 7 6 4.1945 0.8604 1.1265 8 7 3.4991 0.3046 2.0945 9 14 6.0612 0.8603 1.1985 10 1 6.5294 2.0824 1.9002 11 1 6.5281 -0.3424 1.9339 12 1 6.6098 0.8408 -0.1812 13 7 1.5973 2.1184 -1.2268 14 6 2.1712 1.4772 -2.4175 15 6 1.9281 3.5492 -1.1883 16 1 3.0109 3.6712 -1.1611 17 6 1.3121 4.1816 0.0612 18 6 1.3772 4.2254 -2.4173 19 6 0.1315 3.8717 -2.9010 20 6 -0.3757 4.4950 -4.0257 21 6 0.3666 5.4657 -4.6720 22 6 1.6145 5.8156 -4.1913 23 6 2.1199 5.1953 -3.0641 24 1 -0.3633 -1.0235 0.0914 25 1 -0.3633 0.5910 0.8408 26 1 -0.3633 0.4327 -0.9322 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.9554 -0.1050 2.8462 30 1 1.8531 0.4355 -2.4580 31 1 1.8277 1.9976 -3.3115 32 1 3.2590 1.5232 -2.3661 33 1 0.2476 3.9503 0.0984 34 1 1.8018 3.7825 0.9495 35 1 1.4480 5.2625 0.0260 36 1 -0.4468 3.1105 -2.3984 37 1 -1.3509 4.2219 -4.4011 38 1 -0.0285 5.9508 -5.5523 39 1 2.1947 6.5737 -4.6965 40 1 3.0949 5.4689 -2.6884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383901477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:14 Heat of formation + Delta-G solvation = 23.141408 kcal Electronic energy + Delta-G solvation = -18706.510730 eV Core-core repulsion = 16099.948781 eV Total energy + Delta-G solvation = -2606.561949 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.28954 -37.16349 -33.52973 -31.75529 -30.61217 -30.24327 -28.97444 -26.68968 -24.24885 -23.48305 -22.38185 -22.05690 -19.92934 -18.63043 -16.57387 -16.10843 -15.45183 -14.94782 -14.63639 -14.13436 -13.63601 -13.46783 -13.00048 -12.86691 -12.70534 -12.37655 -11.95649 -11.85368 -11.53653 -11.28116 -11.10732 -10.87126 -10.78890 -10.72749 -10.62270 -10.49438 -10.15696 -9.86614 -9.65471 -9.42176 -9.02658 -8.59191 -8.34976 -8.27392 -7.09865 -5.98113 -4.10879 1.69562 1.74352 3.25956 3.33672 3.36508 4.13376 4.39719 5.00241 5.18347 5.25183 5.29203 5.32962 5.48925 5.85082 5.91953 6.05669 6.08143 6.20004 6.31854 6.33651 6.41205 6.46296 6.48229 6.59838 6.69061 6.72033 6.79277 6.82348 6.87954 6.91469 7.09019 7.13878 7.22266 7.35712 7.38811 7.65331 7.77823 8.01248 8.18545 8.34232 8.49329 8.99304 9.56362 11.00927 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.007083 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.008324 B = 3952.427751 C = 4541.436473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.210 3.790 4 H 0.046 0.954 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.529 5.529 14 C 0.032 3.968 15 C 0.123 3.877 16 H 0.051 0.949 17 C -0.134 4.134 18 C -0.060 4.060 19 C -0.092 4.092 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.122 4.122 24 H 0.024 0.976 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.091 0.909 29 H 0.261 0.739 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.029 0.971 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 6.969 -8.571 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.104 3.896 4 H 0.064 0.936 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.253 5.253 14 C -0.117 4.117 15 C 0.014 3.986 16 H 0.069 0.931 17 C -0.192 4.192 18 C -0.060 4.060 19 C -0.110 4.110 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.145 4.145 23 C -0.141 4.141 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.149 0.851 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.876 6.814 -8.404 12.312 hybrid contribution 2.088 0.008 0.076 2.090 sum -3.788 6.821 -8.328 11.412 Atomic orbital electron populations 1.21693 0.98894 0.98281 1.00494 1.21609 0.92137 0.99277 1.01977 1.19372 0.92557 0.90874 0.86836 0.93590 1.21727 0.92832 1.37202 1.06251 0.92686 1.24884 0.97761 0.95089 0.95593 1.69872 1.34898 1.37739 1.09887 0.86722 0.86489 0.77525 0.78027 1.20759 1.21208 1.20129 1.62560 1.58100 1.00215 1.04419 1.22205 0.98070 0.98943 0.92496 1.20362 0.97568 0.89609 0.91052 0.93120 1.21778 1.01052 0.98519 0.97815 1.20168 0.94321 0.95213 0.96327 1.21129 0.95533 0.98779 0.95532 1.21149 0.99685 0.97286 0.96636 1.21011 0.95294 0.98860 1.00159 1.21002 0.96158 1.00331 0.96998 1.21074 0.99817 0.97259 0.95952 0.95720 0.94200 0.93579 0.94883 0.89092 0.92941 0.92266 0.93994 0.95227 0.92611 0.91048 0.93740 0.85135 0.86739 0.86975 0.86834 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.71 37.16 0.36 -2.36 16 2 C -0.11 -2.60 5.02 -26.73 -0.13 -2.73 16 3 C 0.21 4.96 1.46 -68.86 -0.10 4.86 16 4 H 0.05 1.19 6.02 -51.93 -0.31 0.88 16 5 C -0.54 -14.11 7.11 -34.44 -0.24 -14.35 16 6 H 0.06 1.46 5.81 -52.49 -0.30 1.16 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.46 11.30 55.43 0.63 -23.84 16 9 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.53 -10.77 3.34 -229.69 -0.77 -11.53 16 14 C 0.03 0.63 8.59 60.07 0.52 1.14 16 15 C 0.12 2.33 2.00 -68.87 -0.14 2.20 16 16 H 0.05 1.07 6.88 -51.93 -0.36 0.71 16 17 C -0.13 -2.44 8.59 37.15 0.32 -2.12 16 18 C -0.06 -1.00 3.73 -104.62 -0.39 -1.39 16 19 C -0.09 -1.43 8.41 -39.58 -0.33 -1.76 16 20 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 21 C -0.14 -1.73 10.05 -39.58 -0.40 -2.12 16 22 C -0.13 -1.69 10.05 -39.59 -0.40 -2.08 16 23 C -0.12 -1.86 9.67 -39.58 -0.38 -2.24 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.05 0.87 7.83 -51.93 -0.41 0.47 16 27 H 0.03 0.76 6.35 -51.93 -0.33 0.43 16 28 H 0.09 2.38 6.01 -51.93 -0.31 2.06 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.06 1.18 6.32 -51.93 -0.33 0.85 16 31 H 0.04 0.76 6.35 -51.93 -0.33 0.43 16 32 H 0.03 0.64 6.29 -51.93 -0.33 0.31 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 35 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 36 H 0.13 2.11 7.71 -52.49 -0.40 1.71 16 37 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.12 1.67 8.04 -52.49 -0.42 1.24 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -26.71 310.50 -8.57 -35.28 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.27 Total: 2.83 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -1.81 Total: -23.35 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.14 Total: -35.37 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.71 -8.57 -35.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383901477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.417 kcal (2) G-P(sol) polarization free energy of solvation -26.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds