Wall clock time and date at job start Mon Mar 30 2020 06:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46976 * 2 1 4 4 H 1.08998 * 109.47073 * 57.65023 * 3 2 1 5 5 C 1.50702 * 109.47079 * 177.64267 * 3 2 1 6 6 H 1.08002 * 120.00083 * 119.99917 * 5 3 2 7 7 C 1.37873 * 120.00176 * 300.00386 * 5 3 2 8 8 N 1.31514 * 120.00113 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99968 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46678 * 89.99962 * 9 7 5 11 11 H 1.48503 * 109.47054 * 209.99731 * 9 7 5 12 12 H 1.48494 * 109.47277 * 329.99732 * 9 7 5 13 13 N 1.46892 * 109.47361 * 297.64571 * 3 2 1 14 14 C 1.46910 * 110.99831 * 297.08495 * 13 3 2 15 15 C 1.46900 * 111.00220 * 173.12981 * 13 3 2 16 16 H 1.08998 * 109.47054 * 63.83350 * 15 13 3 17 17 C 1.52989 * 109.47059 * 303.83099 * 15 13 3 18 18 C 1.50700 * 109.47059 * 183.82774 * 15 13 3 19 19 C 1.38238 * 119.99844 * 39.73085 * 18 15 13 20 20 C 1.38237 * 119.99732 * 179.78728 * 19 18 15 21 21 C 1.38236 * 120.00175 * 0.43480 * 20 19 18 22 22 C 1.38231 * 119.99560 * 359.81793 * 21 20 19 23 23 C 1.38233 * 120.00028 * 219.99902 * 18 15 13 24 24 H 1.08994 * 109.46989 * 185.10534 * 1 2 3 25 25 H 1.09010 * 109.46972 * 305.10277 * 1 2 3 26 26 H 1.09002 * 109.47004 * 65.10072 * 1 2 3 27 27 H 1.08996 * 109.47318 * 239.99833 * 2 1 3 28 28 H 1.09000 * 109.47423 * 119.99351 * 2 1 3 29 29 H 0.97004 * 120.00008 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46817 * 59.99850 * 14 13 3 31 31 H 1.09002 * 109.46797 * 180.02562 * 14 13 3 32 32 H 1.08998 * 109.46907 * 299.99908 * 14 13 3 33 33 H 1.08998 * 109.47563 * 307.14904 * 17 15 13 34 34 H 1.09000 * 109.47228 * 67.15242 * 17 15 13 35 35 H 1.09000 * 109.47106 * 187.14917 * 17 15 13 36 36 H 1.08001 * 120.00206 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.00015 * 180.27542 * 20 19 18 38 38 H 1.07995 * 120.00145 * 179.83703 * 21 20 19 39 39 H 1.08008 * 119.99582 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.99953 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6426 1.9684 0.8682 5 6 3.5458 1.4430 0.0584 6 1 4.1170 1.8996 -0.7364 7 6 4.1945 0.8604 1.1265 8 7 3.4991 0.3046 2.0945 9 14 6.0612 0.8603 1.1985 10 1 6.5294 2.0824 1.9002 11 1 6.5281 -0.3424 1.9339 12 1 6.6098 0.8408 -0.1812 13 7 1.5973 2.1184 -1.2268 14 6 2.1712 1.4772 -2.4175 15 6 1.9281 3.5492 -1.1883 16 1 3.0109 3.6712 -1.1611 17 6 1.3121 4.1816 0.0612 18 6 1.3772 4.2254 -2.4173 19 6 0.1315 3.8717 -2.9010 20 6 -0.3757 4.4950 -4.0257 21 6 0.3666 5.4657 -4.6720 22 6 1.6145 5.8156 -4.1913 23 6 2.1199 5.1953 -3.0641 24 1 -0.3633 -1.0235 0.0914 25 1 -0.3633 0.5910 0.8408 26 1 -0.3633 0.4327 -0.9322 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.9554 -0.1050 2.8462 30 1 1.8531 0.4355 -2.4580 31 1 1.8277 1.9976 -3.3115 32 1 3.2590 1.5232 -2.3661 33 1 0.2476 3.9503 0.0984 34 1 1.8018 3.7825 0.9495 35 1 1.4480 5.2625 0.0260 36 1 -0.4468 3.1105 -2.3984 37 1 -1.3509 4.2219 -4.4011 38 1 -0.0285 5.9508 -5.5523 39 1 2.1947 6.5737 -4.6965 40 1 3.0949 5.4689 -2.6884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383901477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:13 Heat of formation + Delta-G solvation = 10.428834 kcal Electronic energy + Delta-G solvation = -18707.061989 eV Core-core repulsion = 16099.948781 eV Total energy + Delta-G solvation = -2607.113208 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58805 -38.70642 -35.24349 -33.61685 -31.94036 -31.57241 -30.35628 -28.56766 -26.01856 -25.07324 -23.81483 -23.25302 -21.39117 -20.41579 -18.28390 -17.52268 -17.13787 -16.43969 -16.12375 -15.67079 -15.03982 -15.01896 -14.57322 -14.30613 -14.06530 -13.99073 -13.48109 -13.26119 -13.11333 -13.02697 -12.84519 -12.60622 -12.45764 -12.26513 -12.23452 -11.93539 -11.73790 -11.55767 -11.49230 -11.21212 -10.88900 -10.37996 -9.68381 -9.45380 -8.89711 -8.01048 -6.22319 0.57969 0.64490 1.34821 1.37638 1.45387 2.40093 3.01088 3.17150 3.44952 3.96049 4.17347 4.29219 4.41383 4.51656 4.53492 4.55765 4.70227 4.76730 4.78777 4.83317 4.88611 4.92944 5.00813 5.14468 5.16569 5.26410 5.30634 5.33897 5.36375 5.46635 5.53642 5.65411 5.69870 5.74250 5.82166 5.95267 6.10493 6.24111 6.26833 6.43716 6.70992 6.99411 7.47710 8.93431 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.007083 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.008324 B = 3952.427751 C = 4541.436473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C 0.217 3.783 4 H 0.021 0.979 5 C -0.547 4.547 6 H 0.044 0.956 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.939 3.061 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.520 5.520 14 C 0.041 3.959 15 C 0.126 3.874 16 H 0.022 0.978 17 C -0.125 4.125 18 C -0.078 4.078 19 C -0.103 4.103 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.136 4.136 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.006 0.994 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 8.098 -10.674 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.146 4.146 3 C 0.110 3.890 4 H 0.039 0.961 5 C -0.586 4.586 6 H 0.063 0.937 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.766 3.234 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.243 5.243 14 C -0.107 4.107 15 C 0.017 3.983 16 H 0.040 0.960 17 C -0.183 4.183 18 C -0.079 4.079 19 C -0.122 4.122 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.155 4.155 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.025 0.975 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.721 7.950 -10.517 14.798 hybrid contribution 2.323 -0.273 0.662 2.430 sum -4.398 7.677 -9.855 13.244 Atomic orbital electron populations 1.21548 0.96164 0.99512 1.00867 1.21462 0.94537 0.98387 1.00210 1.19141 0.91170 0.91240 0.87483 0.96127 1.21951 0.94285 1.36594 1.05804 0.93748 1.25523 1.01418 0.95109 0.95510 1.69989 1.36153 1.38437 1.10278 0.85852 0.82170 0.77533 0.77834 1.20440 1.20818 1.20094 1.62512 1.57515 1.00984 1.03282 1.22129 0.96495 0.99137 0.92954 1.20307 0.96087 0.88879 0.93029 0.95968 1.21678 1.00783 0.99530 0.96284 1.19919 0.95407 0.96548 0.96005 1.21099 0.95123 0.99305 0.96649 1.21440 1.00736 0.96805 0.95565 1.21430 0.94659 0.97929 1.00614 1.21327 0.96667 1.00233 0.96010 1.21187 0.99922 0.97438 0.96911 0.93880 0.94665 0.92422 0.95283 0.92093 0.93013 0.92332 0.92043 0.97519 0.92153 0.94047 0.91791 0.86135 0.84223 0.83664 0.84163 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.71 71.98 0.70 -4.16 16 2 C -0.11 -5.09 5.02 30.60 0.15 -4.93 16 3 C 0.22 10.58 1.46 44.17 0.06 10.65 16 4 H 0.02 1.13 6.02 -2.39 -0.01 1.11 16 5 C -0.55 -29.46 7.11 25.60 0.18 -29.27 16 6 H 0.04 2.44 5.81 -2.91 -0.02 2.43 16 7 C 0.02 1.33 5.30 84.65 0.45 1.77 16 8 N -0.91 -51.60 11.30 21.45 0.24 -51.35 16 9 Si 0.94 43.82 29.54 68.60 2.03 45.85 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.52 -21.48 3.34 -880.59 -2.94 -24.41 16 14 C 0.04 1.65 8.59 127.69 1.10 2.75 16 15 C 0.13 4.87 2.00 44.17 0.09 4.96 16 16 H 0.02 0.98 6.88 -2.39 -0.02 0.96 16 17 C -0.13 -4.66 8.59 71.98 0.62 -4.04 16 18 C -0.08 -2.55 3.73 -19.87 -0.07 -2.62 16 19 C -0.10 -3.05 8.41 22.27 0.19 -2.86 16 20 C -0.13 -3.02 10.05 22.27 0.22 -2.79 16 21 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 22 C -0.12 -2.90 10.05 22.27 0.22 -2.67 16 23 C -0.14 -3.94 9.67 22.27 0.22 -3.72 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.06 2.12 7.83 -2.39 -0.02 2.10 16 27 H 0.03 1.36 6.35 -2.39 -0.02 1.34 16 28 H 0.06 3.27 6.01 -2.39 -0.01 3.26 16 29 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 30 H 0.06 2.31 6.32 -2.39 -0.02 2.30 16 31 H 0.06 2.20 6.35 -2.39 -0.02 2.18 16 32 H 0.01 0.28 6.29 -2.39 -0.02 0.26 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.76 6.62 -2.39 -0.02 1.74 16 35 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 36 H 0.12 3.75 7.71 -2.91 -0.02 3.73 16 37 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.11 3.25 8.04 -2.91 -0.02 3.22 16 Total: -1.00 -58.19 310.50 4.68 -53.51 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.00 Total: 15.87 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 4.35 Total: -39.46 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -2.69 Total: -75.77 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -58.19 4.68 -53.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383901477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.941 kcal (2) G-P(sol) polarization free energy of solvation -58.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds