Wall clock time and date at job start Mon Mar 30 2020 06:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46903 * 2 1 4 4 H 1.08998 * 109.47073 * 174.00407 * 3 2 1 5 5 C 1.50705 * 109.46835 * 54.00333 * 3 2 1 6 6 H 1.08000 * 119.99714 * 244.01228 * 5 3 2 7 7 C 1.37871 * 119.99895 * 64.02206 * 5 3 2 8 8 N 1.31514 * 120.00492 * 7.32220 * 7 5 3 9 9 Si 1.86807 * 119.99704 * 187.32484 * 7 5 3 10 10 H 1.48498 * 109.46907 * 60.00045 * 9 7 5 11 11 H 1.48501 * 109.46992 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47182 * 299.99616 * 9 7 5 13 13 N 1.46894 * 109.47119 * 294.00335 * 3 2 1 14 14 C 1.46902 * 111.00054 * 163.54779 * 13 3 2 15 15 C 1.46899 * 111.00091 * 287.49617 * 13 3 2 16 16 H 1.09000 * 109.47497 * 318.50037 * 15 13 3 17 17 C 1.53005 * 109.47290 * 198.49959 * 15 13 3 18 18 C 1.50700 * 109.47113 * 78.50071 * 15 13 3 19 19 C 1.38232 * 120.00156 * 53.97790 * 18 15 13 20 20 C 1.38234 * 120.00132 * 179.78896 * 19 18 15 21 21 C 1.38232 * 120.00053 * 0.44439 * 20 19 18 22 22 C 1.38241 * 120.00029 * 359.81359 * 21 20 19 23 23 C 1.38229 * 119.99525 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46864 * 180.59749 * 1 2 3 25 25 H 1.09001 * 109.46664 * 300.59598 * 1 2 3 26 26 H 1.09000 * 109.47073 * 60.59356 * 1 2 3 27 27 H 1.08995 * 109.47002 * 240.00495 * 2 1 3 28 28 H 1.08999 * 109.47020 * 120.00209 * 2 1 3 29 29 H 0.96998 * 119.99620 * 4.31523 * 8 7 5 30 30 H 1.08996 * 109.47228 * 64.06900 * 14 13 3 31 31 H 1.09004 * 109.47281 * 184.07743 * 14 13 3 32 32 H 1.09004 * 109.46949 * 304.06969 * 14 13 3 33 33 H 1.09005 * 109.46938 * 180.02562 * 17 15 13 34 34 H 1.08999 * 109.47047 * 299.99898 * 17 15 13 35 35 H 1.08997 * 109.47068 * 59.99874 * 17 15 13 36 36 H 1.08006 * 119.99845 * 0.02562 * 19 18 15 37 37 H 1.08008 * 120.00062 * 180.28065 * 20 19 18 38 38 H 1.08000 * 120.00398 * 179.83370 * 21 20 19 39 39 H 1.07992 * 119.99923 * 179.97438 * 22 21 20 40 40 H 1.08008 * 119.99946 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1247 1.4445 0.1073 5 6 1.4201 2.1944 1.1496 6 1 0.7611 3.0281 0.9568 7 6 1.6943 1.8182 2.4473 8 7 2.6050 0.9003 2.6874 9 14 0.7722 2.6122 3.8646 10 1 -0.6824 2.3531 3.7157 11 1 1.2480 2.0374 5.1486 12 1 1.0176 4.0767 3.8563 13 7 1.6720 2.0920 -1.2652 14 6 1.7871 3.5527 -1.1601 15 6 2.4844 1.5786 -2.3762 16 1 3.5187 1.4695 -2.0500 17 6 2.4205 2.5581 -3.5499 18 6 1.9508 0.2380 -2.8111 19 6 0.6176 0.1016 -3.1500 20 6 0.1291 -1.1271 -3.5531 21 6 0.9718 -2.2215 -3.6086 22 6 2.3039 -2.0863 -3.2647 23 6 2.7933 -0.8566 -2.8657 24 1 -0.3633 -1.0276 0.0107 25 1 -0.3633 0.5231 0.8846 26 1 -0.3633 0.5046 -0.8953 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.1277 0.5331 1.9574 30 1 2.8287 3.8237 -0.9880 31 1 1.4402 4.0121 -2.0857 32 1 1.1775 3.9063 -0.3284 33 1 3.0230 2.1769 -4.3745 34 1 1.3863 2.6672 -3.8762 35 1 2.8065 3.5277 -3.2353 36 1 -0.0415 0.9560 -3.1034 37 1 -0.9116 -1.2326 -3.8222 38 1 0.5896 -3.1821 -3.9210 39 1 2.9621 -2.9414 -3.3076 40 1 3.8339 -0.7511 -2.5966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383901485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:16 Heat of formation + Delta-G solvation = 32.864020 kcal Electronic energy + Delta-G solvation = -19159.291868 eV Core-core repulsion = 16553.151523 eV Total energy + Delta-G solvation = -2606.140345 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52936 -37.12928 -34.04505 -31.37098 -31.01394 -30.54092 -28.41856 -26.09907 -25.25853 -23.13714 -22.47255 -21.84250 -19.99258 -19.00611 -16.60080 -16.54872 -15.29703 -15.07464 -14.28338 -14.19404 -13.84073 -13.65676 -13.17495 -12.98770 -12.65612 -12.28473 -12.03476 -11.94155 -11.82254 -11.34558 -11.18451 -10.94971 -10.74777 -10.60463 -10.43684 -10.32303 -10.07991 -9.98251 -9.75044 -9.53070 -8.59603 -8.43597 -8.32377 -7.90925 -7.24942 -6.28254 -3.98624 1.75292 1.81860 3.44355 3.47280 3.64839 4.16638 4.54152 4.86259 5.15904 5.28118 5.31464 5.43110 5.47047 5.63082 5.66682 5.84254 5.93136 5.97294 6.14590 6.20980 6.33318 6.36655 6.43881 6.44945 6.48096 6.58860 6.71716 6.82848 6.83799 6.88539 7.08852 7.12502 7.24779 7.37451 7.39581 7.50851 7.66669 7.89255 8.08392 8.46533 8.63034 8.92202 9.69818 11.06835 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026349 B = 0.007927 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.392730 B = 3531.282597 C = 3998.192039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.120 4.120 3 C 0.207 3.793 4 H -0.014 1.014 5 C -0.586 4.586 6 H 0.059 0.941 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 1.061 2.939 10 H -0.288 1.288 11 H -0.284 1.284 12 H -0.290 1.290 13 N -0.521 5.521 14 C 0.034 3.966 15 C 0.111 3.889 16 H 0.039 0.961 17 C -0.144 4.144 18 C -0.043 4.043 19 C -0.085 4.085 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.121 4.121 24 H 0.012 0.988 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.269 0.731 30 H 0.010 0.990 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 -1.478 -12.195 12.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.158 4.158 3 C 0.101 3.899 4 H 0.003 0.997 5 C -0.624 4.624 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.548 5.548 9 Si 0.890 3.110 10 H -0.214 1.214 11 H -0.210 1.210 12 H -0.216 1.216 13 N -0.245 5.245 14 C -0.114 4.114 15 C 0.002 3.998 16 H 0.057 0.943 17 C -0.202 4.202 18 C -0.043 4.043 19 C -0.103 4.103 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.143 4.143 23 C -0.139 4.139 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.403 -1.609 -10.625 11.011 hybrid contribution 1.090 0.083 -1.311 1.707 sum -1.313 -1.526 -11.935 12.104 Atomic orbital electron populations 1.21430 0.96636 0.97281 1.01930 1.21754 0.96462 0.98047 0.99523 1.19404 0.92892 0.91809 0.85842 0.99653 1.21962 1.31311 1.17601 0.91510 0.92296 1.25648 0.96921 0.96027 0.99605 1.70774 1.20799 1.26937 1.36262 0.83657 0.75805 0.75453 0.76079 1.21429 1.20962 1.21643 1.62067 1.53154 1.04515 1.04794 1.22362 0.99213 0.88862 1.00998 1.20599 0.94912 0.91553 0.92734 0.94316 1.21999 1.02132 0.98863 0.97160 1.19730 0.93951 0.94587 0.96078 1.20878 0.94909 0.97308 0.97253 1.21076 0.99208 0.93258 1.00780 1.20982 0.93983 0.98292 1.01785 1.20960 0.95697 0.97013 1.00655 1.20987 0.99557 0.92792 1.00597 0.96890 0.92418 0.93238 0.93794 0.92869 0.91915 0.97181 0.93526 0.89842 0.93020 0.91947 0.92139 0.85925 0.86780 0.86954 0.86815 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.11 37.16 0.34 -2.29 16 2 C -0.12 -2.85 4.96 -26.73 -0.13 -2.98 16 3 C 0.21 5.09 1.47 -68.86 -0.10 4.99 16 4 H -0.01 -0.38 7.16 -51.93 -0.37 -0.76 16 5 C -0.59 -15.68 6.21 -34.44 -0.21 -15.90 16 6 H 0.06 1.58 5.71 -52.49 -0.30 1.28 16 7 C 0.02 0.62 5.25 -17.82 -0.09 0.53 16 8 N -0.91 -27.03 12.93 55.43 0.72 -26.32 16 9 Si 1.06 25.01 29.91 -169.99 -5.08 19.92 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.52 -10.78 3.82 -229.68 -0.88 -11.66 16 14 C 0.03 0.66 7.98 60.07 0.48 1.14 16 15 C 0.11 1.99 2.42 -68.86 -0.17 1.82 16 16 H 0.04 0.75 7.47 -51.93 -0.39 0.36 16 17 C -0.14 -2.11 7.96 37.16 0.30 -1.82 16 18 C -0.04 -0.73 2.54 -104.62 -0.27 -1.00 16 19 C -0.09 -1.39 6.95 -39.59 -0.28 -1.67 16 20 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 21 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 22 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 23 C -0.12 -1.96 8.15 -39.58 -0.32 -2.28 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 1.43 7.02 -51.93 -0.36 1.07 16 26 H 0.05 1.06 6.05 -51.93 -0.31 0.75 16 27 H 0.04 0.97 3.77 -51.93 -0.20 0.77 16 28 H 0.05 1.41 6.32 -51.93 -0.33 1.08 16 29 H 0.27 8.04 6.02 -40.82 -0.25 7.80 16 30 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 31 H 0.05 0.77 6.31 -51.93 -0.33 0.44 16 32 H 0.08 1.77 5.54 -51.93 -0.29 1.48 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.89 7.74 -51.93 -0.40 0.48 16 35 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 36 H 0.12 2.02 7.83 -52.48 -0.41 1.61 16 37 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.75 7.96 -52.48 -0.42 1.33 16 LS Contribution 301.04 15.07 4.54 4.54 Total: -1.00 -29.04 301.04 -8.38 -37.42 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.02 Total: 2.26 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -1.65 Total: -26.17 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.16 Total: -37.98 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.04 -8.38 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383901485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.287 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds