Wall clock time and date at job start Mon Mar 30 2020 06:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46903 * 2 1 4 4 H 1.08998 * 109.47073 * 174.00407 * 3 2 1 5 5 C 1.50705 * 109.46835 * 54.00333 * 3 2 1 6 6 H 1.08000 * 119.99714 * 244.01228 * 5 3 2 7 7 C 1.37871 * 119.99895 * 64.02206 * 5 3 2 8 8 N 1.31514 * 120.00492 * 7.32220 * 7 5 3 9 9 Si 1.86807 * 119.99704 * 187.32484 * 7 5 3 10 10 H 1.48498 * 109.46907 * 60.00045 * 9 7 5 11 11 H 1.48501 * 109.46992 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47182 * 299.99616 * 9 7 5 13 13 N 1.46894 * 109.47119 * 294.00335 * 3 2 1 14 14 C 1.46902 * 111.00054 * 163.54779 * 13 3 2 15 15 C 1.46899 * 111.00091 * 287.49617 * 13 3 2 16 16 H 1.09000 * 109.47497 * 318.50037 * 15 13 3 17 17 C 1.53005 * 109.47290 * 198.49959 * 15 13 3 18 18 C 1.50700 * 109.47113 * 78.50071 * 15 13 3 19 19 C 1.38232 * 120.00156 * 53.97790 * 18 15 13 20 20 C 1.38234 * 120.00132 * 179.78896 * 19 18 15 21 21 C 1.38232 * 120.00053 * 0.44439 * 20 19 18 22 22 C 1.38241 * 120.00029 * 359.81359 * 21 20 19 23 23 C 1.38229 * 119.99525 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46864 * 180.59749 * 1 2 3 25 25 H 1.09001 * 109.46664 * 300.59598 * 1 2 3 26 26 H 1.09000 * 109.47073 * 60.59356 * 1 2 3 27 27 H 1.08995 * 109.47002 * 240.00495 * 2 1 3 28 28 H 1.08999 * 109.47020 * 120.00209 * 2 1 3 29 29 H 0.96998 * 119.99620 * 4.31523 * 8 7 5 30 30 H 1.08996 * 109.47228 * 64.06900 * 14 13 3 31 31 H 1.09004 * 109.47281 * 184.07743 * 14 13 3 32 32 H 1.09004 * 109.46949 * 304.06969 * 14 13 3 33 33 H 1.09005 * 109.46938 * 180.02562 * 17 15 13 34 34 H 1.08999 * 109.47047 * 299.99898 * 17 15 13 35 35 H 1.08997 * 109.47068 * 59.99874 * 17 15 13 36 36 H 1.08006 * 119.99845 * 0.02562 * 19 18 15 37 37 H 1.08008 * 120.00062 * 180.28065 * 20 19 18 38 38 H 1.08000 * 120.00398 * 179.83370 * 21 20 19 39 39 H 1.07992 * 119.99923 * 179.97438 * 22 21 20 40 40 H 1.08008 * 119.99946 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1247 1.4445 0.1073 5 6 1.4201 2.1944 1.1496 6 1 0.7611 3.0281 0.9568 7 6 1.6943 1.8182 2.4473 8 7 2.6050 0.9003 2.6874 9 14 0.7722 2.6122 3.8646 10 1 -0.6824 2.3531 3.7157 11 1 1.2480 2.0374 5.1486 12 1 1.0176 4.0767 3.8563 13 7 1.6720 2.0920 -1.2652 14 6 1.7871 3.5527 -1.1601 15 6 2.4844 1.5786 -2.3762 16 1 3.5187 1.4695 -2.0500 17 6 2.4205 2.5581 -3.5499 18 6 1.9508 0.2380 -2.8111 19 6 0.6176 0.1016 -3.1500 20 6 0.1291 -1.1271 -3.5531 21 6 0.9718 -2.2215 -3.6086 22 6 2.3039 -2.0863 -3.2647 23 6 2.7933 -0.8566 -2.8657 24 1 -0.3633 -1.0276 0.0107 25 1 -0.3633 0.5231 0.8846 26 1 -0.3633 0.5046 -0.8953 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.1277 0.5331 1.9574 30 1 2.8287 3.8237 -0.9880 31 1 1.4402 4.0121 -2.0857 32 1 1.1775 3.9063 -0.3284 33 1 3.0230 2.1769 -4.3745 34 1 1.3863 2.6672 -3.8762 35 1 2.8065 3.5277 -3.2353 36 1 -0.0415 0.9560 -3.1034 37 1 -0.9116 -1.2326 -3.8222 38 1 0.5896 -3.1821 -3.9210 39 1 2.9621 -2.9414 -3.3076 40 1 3.8339 -0.7511 -2.5966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383901485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:16 Heat of formation + Delta-G solvation = 17.163855 kcal Electronic energy + Delta-G solvation = -19159.972679 eV Core-core repulsion = 16553.151523 eV Total energy + Delta-G solvation = -2606.821155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89810 -38.65147 -35.86378 -33.03492 -32.77808 -31.71925 -29.76947 -27.76583 -27.19262 -24.94377 -23.77518 -23.13195 -21.70438 -20.61227 -18.60483 -17.81523 -16.84412 -16.42421 -16.00804 -15.60812 -15.52698 -15.28248 -14.61829 -14.36463 -14.13885 -14.03210 -13.62051 -13.47850 -13.21259 -12.90371 -12.61996 -12.58664 -12.51633 -12.15004 -11.98573 -11.94600 -11.75984 -11.61434 -11.58667 -11.34157 -10.49237 -10.40256 -9.64941 -9.32058 -9.00098 -8.50419 -6.20631 0.55721 0.63147 1.53051 1.60481 1.78401 2.59035 2.94704 3.24529 3.34385 3.88053 4.05365 4.22128 4.30144 4.34367 4.39505 4.42472 4.57911 4.65529 4.69578 4.71830 4.77285 4.80208 4.93917 4.97072 5.07864 5.18939 5.20880 5.22404 5.27566 5.35949 5.46323 5.57939 5.66082 5.71756 5.75726 5.83614 5.99696 6.12108 6.23214 6.51754 6.60094 6.80680 7.56310 8.84137 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026349 B = 0.007927 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.392730 B = 3531.282597 C = 3998.192039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.111 4.111 3 C 0.214 3.786 4 H -0.057 1.057 5 C -0.584 4.584 6 H 0.060 0.940 7 C -0.028 4.028 8 N -0.939 5.939 9 Si 1.105 2.895 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.519 5.519 14 C 0.036 3.964 15 C 0.108 3.892 16 H 0.016 0.984 17 C -0.136 4.136 18 C -0.062 4.062 19 C -0.096 4.096 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.141 4.141 24 H 0.028 0.972 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.017 0.983 29 H 0.255 0.745 30 H -0.001 1.001 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 -1.724 -13.851 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.149 4.149 3 C 0.107 3.893 4 H -0.040 1.040 5 C -0.622 4.622 6 H 0.078 0.922 7 C -0.226 4.226 8 N -0.577 5.577 9 Si 0.928 3.072 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.243 5.243 14 C -0.112 4.112 15 C 0.000 4.000 16 H 0.034 0.966 17 C -0.193 4.193 18 C -0.062 4.062 19 C -0.114 4.114 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.159 4.159 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.018 0.982 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.075 -1.840 -12.314 13.101 hybrid contribution 1.641 0.122 -0.906 1.879 sum -2.434 -1.719 -13.220 13.551 Atomic orbital electron populations 1.21290 0.95346 0.98077 1.01254 1.21638 0.97364 0.97250 0.98680 1.19182 0.90063 0.92637 0.87430 1.03999 1.22255 1.30393 1.17324 0.92273 0.92240 1.26958 0.97041 0.95972 1.02634 1.70891 1.22339 1.28786 1.35651 0.83091 0.75457 0.75612 0.73062 1.19797 1.21623 1.19693 1.62037 1.53544 1.04953 1.03728 1.22374 0.98308 0.88396 1.02137 1.20685 0.93203 0.93389 0.92732 0.96624 1.21937 1.03132 0.98064 0.96143 1.19699 0.94760 0.94182 0.97577 1.20933 0.94361 0.98186 0.97959 1.21406 1.00621 0.92608 0.99726 1.21382 0.93493 0.99491 1.00425 1.21283 0.96646 0.96937 0.99675 1.21130 0.99590 0.93614 1.01614 0.95293 0.94952 0.91882 0.91920 0.96404 0.93514 0.98232 0.89826 0.91745 0.91288 0.90996 0.91754 0.86193 0.84244 0.83883 0.84591 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.59 9.11 71.98 0.66 -3.93 16 2 C -0.11 -5.39 4.96 30.60 0.15 -5.24 16 3 C 0.21 10.86 1.47 44.17 0.06 10.92 16 4 H -0.06 -3.34 7.16 -2.39 -0.02 -3.36 16 5 C -0.58 -31.91 6.21 25.60 0.16 -31.75 16 6 H 0.06 3.20 5.71 -2.91 -0.02 3.19 16 7 C -0.03 -1.58 5.25 84.65 0.44 -1.14 16 8 N -0.94 -57.67 12.93 21.44 0.28 -57.40 16 9 Si 1.10 50.61 29.91 68.60 2.05 52.67 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 13 N -0.52 -21.50 3.82 -880.57 -3.36 -24.86 16 14 C 0.04 1.38 7.98 127.69 1.02 2.40 16 15 C 0.11 3.87 2.42 44.17 0.11 3.98 16 16 H 0.02 0.63 7.47 -2.39 -0.02 0.61 16 17 C -0.14 -3.74 7.96 71.98 0.57 -3.16 16 18 C -0.06 -2.05 2.54 -19.87 -0.05 -2.10 16 19 C -0.10 -2.93 6.95 22.27 0.15 -2.78 16 20 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 21 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 22 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 23 C -0.14 -4.47 8.15 22.27 0.18 -4.29 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.03 1.58 7.02 -2.39 -0.02 1.56 16 26 H 0.06 2.62 6.05 -2.39 -0.01 2.61 16 27 H 0.06 2.79 3.77 -2.39 -0.01 2.78 16 28 H 0.02 0.96 6.32 -2.39 -0.02 0.95 16 29 H 0.25 16.04 6.02 -92.71 -0.56 15.49 16 30 H 0.00 -0.04 8.13 -2.39 -0.02 -0.06 16 31 H 0.08 2.60 6.31 -2.38 -0.02 2.58 16 32 H 0.06 2.72 5.54 -2.38 -0.01 2.71 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.07 1.86 7.74 -2.39 -0.02 1.84 16 35 H 0.06 1.70 6.44 -2.39 -0.02 1.69 16 36 H 0.12 3.68 7.83 -2.91 -0.02 3.66 16 37 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 40 H 0.11 3.44 7.96 -2.91 -0.02 3.41 16 Total: -1.00 -64.07 301.04 4.32 -59.75 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.22 Total: 16.16 kcal Atomic # 6 Polarization: -50.45 SS G_CDS: 4.13 Total: -46.32 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -3.08 Total: -82.26 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.05 Total: 52.67 kcal Total: -64.07 4.32 -59.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383901485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.912 kcal (2) G-P(sol) polarization free energy of solvation -64.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds