Wall clock time and date at job start Mon Mar 30 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47075 * 2 1 4 4 C 1.38306 * 119.96204 * 270.27370 * 3 2 1 5 5 C 1.38265 * 120.14784 * 180.27606 * 4 3 2 6 6 C 1.38133 * 120.07407 * 359.44555 * 5 4 3 7 7 C 1.38886 * 119.92263 * 0.28038 * 6 5 4 8 8 N 1.39676 * 120.07159 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00261 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.47329 * 180.02562 * 9 8 7 11 11 C 1.52990 * 109.47226 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47222 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47103 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00243 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99991 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00016 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00041 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46739 * 90.00556 * 17 15 13 19 19 H 1.48497 * 109.47139 * 210.00249 * 17 15 13 20 20 H 1.48497 * 109.47149 * 330.00594 * 17 15 13 21 21 C 1.38089 * 119.96065 * 89.99699 * 3 2 1 22 22 H 1.08996 * 109.47199 * 300.00266 * 1 2 3 23 23 H 1.09000 * 109.46839 * 60.00307 * 1 2 3 24 24 H 1.08997 * 109.46728 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47199 * 239.99734 * 2 1 3 26 26 H 1.08999 * 109.46691 * 120.00224 * 2 1 3 27 27 H 1.08001 * 119.92853 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.96572 * 179.72711 * 5 4 3 29 29 H 1.07999 * 120.03792 * 180.25490 * 6 5 4 30 30 H 0.97003 * 119.99650 * 180.02562 * 8 7 6 31 31 H 1.08998 * 109.47324 * 300.00914 * 9 8 7 32 32 H 1.09000 * 109.46859 * 60.00373 * 9 8 7 33 33 H 1.09007 * 109.47286 * 300.00283 * 10 9 8 34 34 H 1.09000 * 109.47074 * 60.00225 * 10 9 8 35 35 H 1.09007 * 109.47326 * 299.99861 * 11 10 9 36 36 H 1.09000 * 109.47278 * 59.99900 * 11 10 9 37 37 H 1.09001 * 109.46702 * 299.99273 * 12 11 10 38 38 H 1.09000 * 109.47400 * 59.99578 * 12 11 10 39 39 H 0.96992 * 120.00223 * 180.02562 * 16 15 13 40 40 H 1.07998 * 120.03755 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2572 2.0740 -1.1982 5 6 2.7235 3.3756 -1.2027 6 6 2.9555 4.0319 -0.0096 7 6 2.7253 3.3809 1.1954 8 7 2.9593 4.0414 2.4036 9 6 3.4486 5.4223 2.4008 10 6 3.6204 5.9054 3.8423 11 6 4.1308 7.3477 3.8394 12 6 4.3032 7.8307 5.2808 13 6 4.8065 9.2512 5.2779 14 1 4.9859 9.7586 4.3415 15 6 5.0380 9.9030 6.4706 16 7 4.8201 9.2850 7.6109 17 14 5.6626 11.6635 6.4670 18 1 4.5085 12.5981 6.4664 19 1 6.4889 11.8981 7.6783 20 1 6.4867 11.8939 5.2533 21 6 2.2622 2.0710 1.1964 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.0720 1.5648 -2.1325 28 1 2.9023 3.8813 -2.1401 29 1 3.3158 5.0501 -0.0138 30 1 2.7985 3.5855 3.2446 31 1 4.4084 5.4666 1.8862 32 1 2.7307 6.0610 1.8863 33 1 2.6607 5.8610 4.3573 34 1 4.3385 5.2666 4.3565 35 1 5.0904 7.3925 3.3243 36 1 3.4124 7.9863 3.3253 37 1 3.3438 7.7859 5.7962 38 1 5.0218 7.1920 5.7945 39 1 4.9825 9.7436 8.4499 40 1 2.0825 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385190284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:28 Heat of formation + Delta-G solvation = -13.122697 kcal Electronic energy + Delta-G solvation = -16621.807263 eV Core-core repulsion = 14013.672784 eV Total energy + Delta-G solvation = -2608.134479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58324 -36.65292 -34.56620 -33.50216 -32.24900 -30.17810 -29.12518 -27.53092 -24.84420 -23.90078 -22.36954 -21.82219 -20.27916 -19.99634 -17.03021 -16.31638 -16.07629 -15.53668 -15.28124 -14.59482 -14.34602 -14.33035 -13.66402 -13.44875 -13.35235 -12.97798 -12.57532 -12.20027 -11.99452 -11.78489 -11.59951 -11.47289 -11.14703 -11.08678 -10.79256 -10.77372 -10.56030 -10.48942 -9.90012 -9.70654 -9.33906 -9.07114 -8.73068 -8.36018 -7.33578 -6.01090 -4.03517 1.43212 1.66346 3.31153 3.37324 3.40690 3.53374 3.88594 4.45158 4.65317 4.78740 5.02855 5.17858 5.21243 5.23739 5.33914 5.34199 5.37314 5.45333 5.57129 5.59374 5.70565 5.72968 5.89785 5.97733 6.06310 6.06822 6.14197 6.34655 6.38303 6.54723 6.69309 6.70342 6.83746 6.90184 7.09815 7.43943 7.66035 7.80272 7.80925 7.99020 8.41574 9.03776 9.60673 11.10323 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.057314 B = 0.002847 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.423581 B = 9831.089246 C =10202.010416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.038 4.038 4 C -0.186 4.186 5 C -0.070 4.070 6 C -0.205 4.205 7 C 0.224 3.776 8 N -0.746 5.746 9 C 0.123 3.877 10 C -0.129 4.129 11 C -0.107 4.107 12 C 0.021 3.979 13 C -0.521 4.521 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.200 4.200 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.398 0.602 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 -16.775 -15.503 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.038 4.038 4 C -0.206 4.206 5 C -0.088 4.088 6 C -0.227 4.227 7 C 0.119 3.881 8 N -0.374 5.374 9 C -0.001 4.001 10 C -0.167 4.167 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.222 4.222 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.233 0.767 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.380 -16.530 -15.318 23.422 hybrid contribution 0.318 0.912 0.492 1.084 sum -6.062 -15.618 -14.826 22.371 Atomic orbital electron populations 1.21731 0.94790 1.01445 1.02320 1.20542 0.96136 0.93001 1.02566 1.19557 0.96290 0.95309 0.92675 1.20686 1.07143 0.95774 0.97022 1.20852 0.96439 0.94368 0.97187 1.20679 1.09829 1.01010 0.91219 1.17878 0.92394 0.91140 0.86647 1.44917 1.72989 1.14412 1.05049 1.21508 0.98344 0.81309 0.98933 1.21855 1.01761 0.99176 0.93886 1.21558 0.99449 0.92067 1.01424 1.19096 0.97000 0.95787 0.89741 1.21272 1.43952 0.98436 0.92266 0.92683 1.25040 0.95700 0.98127 0.95679 1.69963 1.49274 1.37096 0.97253 0.86593 0.78873 0.85029 0.77508 1.20654 1.21219 1.19866 1.20415 1.09713 0.94179 0.97936 0.92517 0.92550 0.92614 0.91182 0.91240 0.86917 0.86469 0.86170 0.76719 0.92460 0.92458 0.91918 0.91909 0.93185 0.93185 0.96653 0.96644 0.93003 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.90 37.16 0.37 -0.73 16 2 C -0.09 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.04 -0.41 5.13 -104.65 -0.54 -0.94 16 4 C -0.19 -2.00 9.70 -39.55 -0.38 -2.38 16 5 C -0.07 -0.78 10.04 -39.61 -0.40 -1.18 16 6 C -0.20 -2.59 9.31 -39.38 -0.37 -2.95 16 7 C 0.22 2.90 6.65 -83.79 -0.56 2.35 16 8 N -0.75 -9.56 5.73 -58.64 -0.34 -9.90 16 9 C 0.12 1.70 4.91 -4.04 -0.02 1.68 16 10 C -0.13 -2.08 5.33 -26.74 -0.14 -2.22 16 11 C -0.11 -2.13 5.15 -26.74 -0.14 -2.27 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 14 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.20 -2.35 9.55 -39.38 -0.38 -2.73 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.12 1.47 6.73 -52.49 -0.35 1.11 16 30 H 0.40 4.63 8.49 -40.82 -0.35 4.29 16 31 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 32 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -30.30 331.94 -9.87 -40.17 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.98 Total: -0.14 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -3.27 Total: -25.48 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.40 Total: -36.26 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.30 -9.87 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385190284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.046 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds