Wall clock time and date at job start Mon Mar 30 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47075 * 2 1 4 4 C 1.38306 * 119.96204 * 270.27370 * 3 2 1 5 5 C 1.38265 * 120.14784 * 180.27606 * 4 3 2 6 6 C 1.38133 * 120.07407 * 359.44555 * 5 4 3 7 7 C 1.38886 * 119.92263 * 0.28038 * 6 5 4 8 8 N 1.39676 * 120.07159 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00261 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.47329 * 180.02562 * 9 8 7 11 11 C 1.52990 * 109.47226 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47222 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47103 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00243 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99991 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00016 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00041 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46739 * 90.00556 * 17 15 13 19 19 H 1.48497 * 109.47139 * 210.00249 * 17 15 13 20 20 H 1.48497 * 109.47149 * 330.00594 * 17 15 13 21 21 C 1.38089 * 119.96065 * 89.99699 * 3 2 1 22 22 H 1.08996 * 109.47199 * 300.00266 * 1 2 3 23 23 H 1.09000 * 109.46839 * 60.00307 * 1 2 3 24 24 H 1.08997 * 109.46728 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47199 * 239.99734 * 2 1 3 26 26 H 1.08999 * 109.46691 * 120.00224 * 2 1 3 27 27 H 1.08001 * 119.92853 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.96572 * 179.72711 * 5 4 3 29 29 H 1.07999 * 120.03792 * 180.25490 * 6 5 4 30 30 H 0.97003 * 119.99650 * 180.02562 * 8 7 6 31 31 H 1.08998 * 109.47324 * 300.00914 * 9 8 7 32 32 H 1.09000 * 109.46859 * 60.00373 * 9 8 7 33 33 H 1.09007 * 109.47286 * 300.00283 * 10 9 8 34 34 H 1.09000 * 109.47074 * 60.00225 * 10 9 8 35 35 H 1.09007 * 109.47326 * 299.99861 * 11 10 9 36 36 H 1.09000 * 109.47278 * 59.99900 * 11 10 9 37 37 H 1.09001 * 109.46702 * 299.99273 * 12 11 10 38 38 H 1.09000 * 109.47400 * 59.99578 * 12 11 10 39 39 H 0.96992 * 120.00223 * 180.02562 * 16 15 13 40 40 H 1.07998 * 120.03755 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2572 2.0740 -1.1982 5 6 2.7235 3.3756 -1.2027 6 6 2.9555 4.0319 -0.0096 7 6 2.7253 3.3809 1.1954 8 7 2.9593 4.0414 2.4036 9 6 3.4486 5.4223 2.4008 10 6 3.6204 5.9054 3.8423 11 6 4.1308 7.3477 3.8394 12 6 4.3032 7.8307 5.2808 13 6 4.8065 9.2512 5.2779 14 1 4.9859 9.7586 4.3415 15 6 5.0380 9.9030 6.4706 16 7 4.8201 9.2850 7.6109 17 14 5.6626 11.6635 6.4670 18 1 4.5085 12.5981 6.4664 19 1 6.4889 11.8981 7.6783 20 1 6.4867 11.8939 5.2533 21 6 2.2622 2.0710 1.1964 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.0720 1.5648 -2.1325 28 1 2.9023 3.8813 -2.1401 29 1 3.3158 5.0501 -0.0138 30 1 2.7985 3.5855 3.2446 31 1 4.4084 5.4666 1.8862 32 1 2.7307 6.0610 1.8863 33 1 2.6607 5.8610 4.3573 34 1 4.3385 5.2666 4.3565 35 1 5.0904 7.3925 3.3243 36 1 3.4124 7.9863 3.3253 37 1 3.3438 7.7859 5.7962 38 1 5.0218 7.1920 5.7945 39 1 4.9825 9.7436 8.4499 40 1 2.0825 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385190284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:28 Heat of formation + Delta-G solvation = -28.438512 kcal Electronic energy + Delta-G solvation = -16622.471407 eV Core-core repulsion = 14013.672784 eV Total energy + Delta-G solvation = -2608.798622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46038 -37.78681 -36.05481 -34.67094 -33.85659 -31.40764 -30.12542 -28.88262 -26.42014 -24.85806 -23.34460 -23.18362 -21.78310 -21.01884 -18.51354 -17.82755 -17.12121 -16.61470 -16.58469 -16.34815 -15.31789 -15.12980 -14.85861 -14.49948 -14.36676 -14.16566 -13.95303 -13.66045 -13.26968 -13.11016 -12.84573 -12.65713 -12.40934 -12.32743 -12.27397 -12.21713 -11.74785 -11.53868 -11.47109 -11.34010 -11.08033 -10.84184 -10.56445 -9.58560 -8.28470 -8.21378 -6.32522 0.56515 0.77798 1.39337 1.40681 1.51876 2.39437 2.53209 3.01203 3.11802 3.90018 3.98908 4.07757 4.08870 4.29217 4.34270 4.43950 4.54716 4.60098 4.65615 4.68244 4.75428 4.76378 4.82962 4.93245 5.11631 5.16310 5.17786 5.23604 5.25167 5.27040 5.41097 5.48859 5.52469 5.69351 5.75173 5.85049 5.85690 6.04657 6.24139 6.47316 6.84869 6.86662 7.36954 8.90546 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.057314 B = 0.002847 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.423581 B = 9831.089246 C =10202.010416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.042 4.042 4 C -0.190 4.190 5 C -0.075 4.075 6 C -0.224 4.224 7 C 0.206 3.794 8 N -0.748 5.748 9 C 0.137 3.863 10 C -0.117 4.117 11 C -0.095 4.095 12 C 0.022 3.978 13 C -0.544 4.544 14 H 0.061 0.939 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.263 1.263 21 C -0.210 4.210 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.403 0.597 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.054 0.946 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.264 0.736 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 -17.106 -17.161 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.043 4.043 4 C -0.210 4.210 5 C -0.094 4.094 6 C -0.247 4.247 7 C 0.102 3.898 8 N -0.377 5.377 9 C 0.012 3.988 10 C -0.154 4.154 11 C -0.133 4.133 12 C -0.015 4.015 13 C -0.582 4.582 14 H 0.079 0.921 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.187 1.187 21 C -0.232 4.232 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.137 0.863 30 H 0.238 0.762 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.490 -16.878 -16.998 24.818 hybrid contribution 0.324 0.944 0.984 1.401 sum -6.166 -15.934 -16.015 23.417 Atomic orbital electron populations 1.21715 0.94227 1.02346 1.01784 1.20595 0.96521 0.91525 1.03488 1.19908 0.95529 0.96502 0.92356 1.21015 1.06319 0.95704 0.97935 1.21143 0.95924 0.94753 0.97550 1.20844 1.10708 1.01293 0.91805 1.18075 0.93334 0.91791 0.86612 1.44784 1.73497 1.13955 1.05479 1.21234 0.98604 0.82066 0.96858 1.21645 1.01377 0.96720 0.95701 1.21351 1.00105 0.94426 0.97466 1.19027 0.94749 0.94810 0.92912 1.21749 1.44025 0.99766 0.92694 0.92105 1.26016 0.95807 1.02995 0.95243 1.70096 1.50285 1.39157 0.97987 0.85441 0.78521 0.79150 0.77912 1.19727 1.20751 1.18674 1.20618 1.09778 0.93954 0.98888 0.93437 0.92699 0.91025 0.89859 0.90754 0.84861 0.84516 0.86313 0.76245 0.92302 0.92303 0.92047 0.92036 0.92723 0.92701 0.99100 0.99093 0.92775 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.90 71.98 0.71 -1.17 16 2 C -0.08 -1.21 6.06 29.85 0.18 -1.03 16 3 C -0.04 -0.84 5.13 -19.88 -0.10 -0.94 16 4 C -0.19 -3.69 9.70 22.29 0.22 -3.47 16 5 C -0.08 -1.57 10.04 22.25 0.22 -1.35 16 6 C -0.22 -5.47 9.31 22.40 0.21 -5.26 16 7 C 0.21 5.19 6.65 38.21 0.25 5.44 16 8 N -0.75 -18.77 5.73 -339.43 -1.95 -20.72 16 9 C 0.14 3.69 4.91 86.38 0.42 4.11 16 10 C -0.12 -3.74 5.33 30.59 0.16 -3.57 16 11 C -0.10 -3.81 5.15 30.59 0.16 -3.66 16 12 C 0.02 1.17 4.97 29.85 0.15 1.32 16 13 C -0.54 -31.24 9.11 25.60 0.23 -31.00 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 16 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 17 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 C -0.21 -4.74 9.55 22.40 0.21 -4.52 16 22 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 25 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 26 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 27 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 28 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.12 2.83 6.73 -2.91 -0.02 2.81 16 30 H 0.40 9.20 8.49 -92.71 -0.79 8.42 16 31 H 0.06 1.58 7.95 -2.39 -0.02 1.56 16 32 H 0.06 1.58 7.95 -2.39 -0.02 1.56 16 33 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -64.73 331.94 4.06 -60.67 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.20 Total: 15.55 kcal Atomic # 6 Polarization: -48.33 SS G_CDS: 3.50 Total: -44.84 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.66 Total: -77.89 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.73 4.06 -60.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385190284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.231 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds