Wall clock time and date at job start Mon Mar 30 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47119 * 2 1 4 4 C 1.38292 * 119.92221 * 89.99824 * 3 2 1 5 5 C 1.38103 * 120.06781 * 180.02562 * 4 3 2 6 6 C 1.38907 * 119.93251 * 359.97438 * 5 4 3 7 7 N 1.39668 * 120.07688 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00181 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47289 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47131 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00176 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46879 * 59.99999 * 16 14 12 18 18 H 1.48503 * 109.47086 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47155 * 300.00002 * 16 14 12 20 20 C 1.38907 * 119.84667 * 0.25939 * 6 5 4 21 21 C 1.38108 * 119.92754 * 359.48722 * 20 6 5 22 22 H 1.09000 * 109.47024 * 59.99575 * 1 2 3 23 23 H 1.08997 * 109.47467 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47107 * 300.00025 * 1 2 3 25 25 H 1.08997 * 109.47107 * 239.99975 * 2 1 3 26 26 H 1.08997 * 109.46714 * 120.00022 * 2 1 3 27 27 H 1.07994 * 119.96476 * 0.04575 * 4 3 2 28 28 H 1.08003 * 120.03201 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00568 * 0.02562 * 7 6 5 30 30 H 1.09001 * 109.47060 * 300.00571 * 8 7 6 31 31 H 1.09004 * 109.47073 * 60.00060 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 33 33 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 34 34 H 1.09001 * 109.46997 * 299.99574 * 10 9 8 35 35 H 1.09004 * 109.47298 * 59.99717 * 10 9 8 36 36 H 1.08998 * 109.47076 * 299.99221 * 11 10 9 37 37 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 38 38 H 0.96999 * 120.00284 * 179.97438 * 15 14 12 39 39 H 1.08004 * 120.03686 * 179.72396 * 20 6 5 40 40 H 1.07998 * 119.96672 * 180.25929 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0712 1.1986 5 6 2.7221 3.3734 1.2021 6 6 2.9542 4.0298 0.0001 7 7 3.4188 5.3469 0.0001 8 6 3.6625 6.0378 -1.2686 9 6 4.1634 7.4562 -0.9890 10 6 4.4172 8.1778 -2.3140 11 6 4.9175 9.5964 -2.0344 12 6 5.1682 10.3071 -3.3395 13 1 4.9890 9.7976 -4.2748 14 6 5.6263 11.6075 -3.3395 15 7 5.8450 12.2276 -2.2006 16 14 5.9377 12.4881 -4.9572 17 1 4.6754 12.5523 -5.7367 18 1 6.4232 13.8650 -4.6858 19 1 6.9627 11.7467 -5.7351 20 6 2.7176 3.3751 -1.2020 21 6 2.2627 2.0711 -1.1985 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0824 1.5601 2.1328 28 1 2.9011 3.8810 2.1385 29 1 3.5801 5.8044 0.8401 30 1 4.4142 5.4934 -1.8402 31 1 2.7356 6.0855 -1.8403 32 1 3.4119 8.0007 -0.4173 33 1 5.0903 7.4081 -0.4176 34 1 5.1685 7.6334 -2.8861 35 1 3.4900 8.2259 -2.8851 36 1 4.1659 10.1406 -1.4626 37 1 5.8447 9.5488 -1.4632 38 1 6.1676 13.1424 -2.2005 39 1 2.8928 3.8840 -2.1384 40 1 2.0825 1.5601 -2.1327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385198038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:31 Heat of formation + Delta-G solvation = -12.995398 kcal Electronic energy + Delta-G solvation = -16567.470228 eV Core-core repulsion = 13959.341269 eV Total energy + Delta-G solvation = -2608.128959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.57281 -36.71477 -34.64555 -33.16365 -31.92890 -30.90420 -29.18371 -27.30710 -24.84858 -23.34121 -22.94514 -21.39478 -20.57792 -20.11140 -17.23059 -16.24411 -15.96715 -15.42873 -15.27819 -14.57221 -14.34053 -14.11223 -13.64734 -13.49137 -13.22447 -13.17850 -12.58334 -12.47043 -12.04775 -11.82107 -11.54541 -11.30361 -11.12908 -11.01897 -10.80465 -10.74900 -10.58291 -10.49447 -9.80402 -9.69453 -9.33829 -9.08118 -8.90742 -8.35708 -7.26883 -6.00814 -4.03386 1.46060 1.61963 3.32676 3.36970 3.39391 3.54521 3.87833 4.45224 4.76463 4.77909 5.02150 5.04219 5.24379 5.24928 5.34260 5.37164 5.38484 5.47138 5.54361 5.69036 5.71931 5.77705 5.87085 6.02530 6.05516 6.06645 6.14139 6.34781 6.38184 6.44818 6.70251 6.72115 6.83644 6.90401 7.09664 7.43239 7.65818 7.80285 7.80809 7.99085 8.41606 9.03643 9.60743 11.10520 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.061613 B = 0.002769 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.337589 B =10108.033592 C =10441.763323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.153 4.153 4 C -0.069 4.069 5 C -0.200 4.200 6 C 0.219 3.781 7 N -0.746 5.746 8 C 0.123 3.877 9 C -0.129 4.129 10 C -0.107 4.107 11 C 0.021 3.979 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.198 4.198 21 C -0.068 4.068 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.399 0.601 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.261 0.739 39 H 0.121 0.879 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 -21.841 6.002 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.155 4.155 4 C -0.088 4.088 5 C -0.223 4.223 6 C 0.114 3.886 7 N -0.374 5.374 8 C -0.001 4.001 9 C -0.167 4.167 10 C -0.145 4.145 11 C -0.016 4.016 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.220 4.220 21 C -0.087 4.087 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.233 0.767 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.095 -21.565 5.869 23.770 hybrid contribution 0.307 0.887 -0.522 1.074 sum -7.788 -20.678 5.346 22.734 Atomic orbital electron populations 1.21769 0.95388 1.01132 1.02117 1.20377 0.95659 0.93078 1.02099 1.19563 1.06075 0.96755 0.93115 1.20679 0.97176 0.93776 0.97186 1.20562 1.09295 0.96240 0.96166 1.17902 0.91986 0.84887 0.93834 1.44915 1.72675 1.11065 1.08745 1.21510 0.99845 0.93343 0.85416 1.21853 1.01014 0.93164 1.00637 1.21559 1.00283 0.98725 0.93935 1.19092 0.96204 0.89371 0.96930 1.21231 1.44080 0.97844 0.92848 0.92740 1.25034 0.95623 0.97617 0.96257 1.69951 1.46048 1.12371 1.25200 0.86651 0.78636 0.78684 0.83990 1.20228 1.21290 1.20233 1.20676 1.08674 0.96059 0.96620 1.20738 0.96913 0.93814 0.97233 0.92688 0.92912 0.92741 0.91654 0.91706 0.86635 0.86500 0.76709 0.92471 0.92471 0.91918 0.91910 0.93186 0.93189 0.96652 0.96656 0.92948 0.86109 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.90 37.16 0.37 -0.73 16 2 C -0.07 -0.61 6.06 -27.88 -0.17 -0.78 16 3 C -0.15 -1.61 5.14 -104.59 -0.54 -2.15 16 4 C -0.07 -0.74 9.69 -39.61 -0.38 -1.12 16 5 C -0.20 -2.32 9.90 -39.38 -0.39 -2.71 16 6 C 0.22 2.80 6.65 -83.79 -0.56 2.25 16 7 N -0.75 -9.51 5.73 -58.63 -0.34 -9.84 16 8 C 0.12 1.69 4.91 -4.04 -0.02 1.67 16 9 C -0.13 -2.07 5.33 -26.73 -0.14 -2.21 16 10 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 C -0.20 -2.47 9.31 -39.38 -0.37 -2.84 16 21 C -0.07 -0.76 9.69 -39.61 -0.38 -1.15 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 29 H 0.40 4.60 8.49 -40.82 -0.35 4.26 16 30 H 0.06 0.79 7.96 -51.93 -0.41 0.37 16 31 H 0.06 0.79 7.94 -51.93 -0.41 0.37 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.12 1.46 6.73 -52.48 -0.35 1.11 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -30.20 331.93 -9.87 -40.07 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.98 Total: -0.31 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -3.27 Total: -25.27 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.40 Total: -36.19 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.20 -9.87 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385198038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.073 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds