Wall clock time and date at job start Mon Mar 30 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47119 * 2 1 4 4 C 1.38292 * 119.92221 * 89.99824 * 3 2 1 5 5 C 1.38103 * 120.06781 * 180.02562 * 4 3 2 6 6 C 1.38907 * 119.93251 * 359.97438 * 5 4 3 7 7 N 1.39668 * 120.07688 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00181 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47289 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47131 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00176 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46879 * 59.99999 * 16 14 12 18 18 H 1.48503 * 109.47086 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47155 * 300.00002 * 16 14 12 20 20 C 1.38907 * 119.84667 * 0.25939 * 6 5 4 21 21 C 1.38108 * 119.92754 * 359.48722 * 20 6 5 22 22 H 1.09000 * 109.47024 * 59.99575 * 1 2 3 23 23 H 1.08997 * 109.47467 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47107 * 300.00025 * 1 2 3 25 25 H 1.08997 * 109.47107 * 239.99975 * 2 1 3 26 26 H 1.08997 * 109.46714 * 120.00022 * 2 1 3 27 27 H 1.07994 * 119.96476 * 0.04575 * 4 3 2 28 28 H 1.08003 * 120.03201 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00568 * 0.02562 * 7 6 5 30 30 H 1.09001 * 109.47060 * 300.00571 * 8 7 6 31 31 H 1.09004 * 109.47073 * 60.00060 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 33 33 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 34 34 H 1.09001 * 109.46997 * 299.99574 * 10 9 8 35 35 H 1.09004 * 109.47298 * 59.99717 * 10 9 8 36 36 H 1.08998 * 109.47076 * 299.99221 * 11 10 9 37 37 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 38 38 H 0.96999 * 120.00284 * 179.97438 * 15 14 12 39 39 H 1.08004 * 120.03686 * 179.72396 * 20 6 5 40 40 H 1.07998 * 119.96672 * 180.25929 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0712 1.1986 5 6 2.7221 3.3734 1.2021 6 6 2.9542 4.0298 0.0001 7 7 3.4188 5.3469 0.0001 8 6 3.6625 6.0378 -1.2686 9 6 4.1634 7.4562 -0.9890 10 6 4.4172 8.1778 -2.3140 11 6 4.9175 9.5964 -2.0344 12 6 5.1682 10.3071 -3.3395 13 1 4.9890 9.7976 -4.2748 14 6 5.6263 11.6075 -3.3395 15 7 5.8450 12.2276 -2.2006 16 14 5.9377 12.4881 -4.9572 17 1 4.6754 12.5523 -5.7367 18 1 6.4232 13.8650 -4.6858 19 1 6.9627 11.7467 -5.7351 20 6 2.7176 3.3751 -1.2020 21 6 2.2627 2.0711 -1.1985 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0824 1.5601 2.1328 28 1 2.9011 3.8810 2.1385 29 1 3.5801 5.8044 0.8401 30 1 4.4142 5.4934 -1.8402 31 1 2.7356 6.0855 -1.8403 32 1 3.4119 8.0007 -0.4173 33 1 5.0903 7.4081 -0.4176 34 1 5.1685 7.6334 -2.8861 35 1 3.4900 8.2259 -2.8851 36 1 4.1659 10.1406 -1.4626 37 1 5.8447 9.5488 -1.4632 38 1 6.1676 13.1424 -2.2005 39 1 2.8928 3.8840 -2.1384 40 1 2.0825 1.5601 -2.1327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385198038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:30 Heat of formation + Delta-G solvation = -28.213488 kcal Electronic energy + Delta-G solvation = -16568.130133 eV Core-core repulsion = 13959.341269 eV Total energy + Delta-G solvation = -2608.788865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44252 -37.82061 -36.12472 -34.62090 -33.34630 -31.76825 -30.59321 -28.50667 -26.43098 -24.22370 -24.11588 -22.64305 -21.80213 -21.36156 -18.53506 -18.03196 -16.96760 -16.61158 -16.50729 -16.21217 -15.26813 -14.97757 -14.86599 -14.48443 -14.32906 -14.16379 -13.99871 -13.68553 -13.41397 -13.10826 -12.98000 -12.75883 -12.37732 -12.30244 -12.27969 -11.97882 -11.71583 -11.52787 -11.46164 -11.34333 -11.08794 -10.71117 -10.55762 -9.77207 -8.20973 -8.19570 -6.32261 0.59351 0.74867 1.39394 1.42517 1.50441 2.39732 2.55016 3.01172 3.12037 3.95450 4.03564 4.07410 4.09127 4.20991 4.35036 4.40409 4.60192 4.63797 4.65728 4.69620 4.76663 4.80461 4.83857 5.02529 5.14713 5.15976 5.16553 5.24653 5.25809 5.26976 5.45020 5.49939 5.52414 5.60524 5.75273 5.85290 5.90203 6.05527 6.24260 6.47219 6.84966 6.87815 7.37132 8.90660 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.061613 B = 0.002769 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.337589 B =10108.033592 C =10441.763323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.154 4.154 4 C -0.075 4.075 5 C -0.207 4.207 6 C 0.198 3.802 7 N -0.748 5.748 8 C 0.137 3.863 9 C -0.116 4.116 10 C -0.095 4.095 11 C 0.022 3.978 12 C -0.545 4.545 13 H 0.061 0.939 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.266 1.266 20 C -0.214 4.214 21 C -0.077 4.077 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.403 0.597 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.054 0.946 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.119 0.881 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 -23.404 5.407 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.156 4.156 4 C -0.094 4.094 5 C -0.229 4.229 6 C 0.094 3.906 7 N -0.378 5.378 8 C 0.012 3.988 9 C -0.154 4.154 10 C -0.134 4.134 11 C -0.015 4.015 12 C -0.583 4.583 13 H 0.079 0.921 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.191 1.191 20 C -0.237 4.237 21 C -0.096 4.096 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.155 0.845 28 H 0.146 0.854 29 H 0.238 0.762 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.631 -23.157 5.278 25.271 hybrid contribution 0.448 1.312 -0.286 1.416 sum -8.183 -21.845 4.992 23.856 Atomic orbital electron populations 1.21751 0.94856 1.01997 1.01627 1.20429 0.96026 0.91636 1.03049 1.19915 1.04996 0.97872 0.92835 1.20995 0.96568 0.93540 0.98268 1.20796 1.09088 0.96773 0.96268 1.18089 0.93026 0.84907 0.94531 1.44771 1.73329 1.11295 1.08380 1.21230 0.99784 0.91726 0.86039 1.21641 1.01087 0.94337 0.98354 1.21352 1.00256 0.95628 0.96123 1.19024 0.94460 0.92538 0.95461 1.21716 1.44062 0.98567 0.93987 0.92106 1.26014 0.95245 0.98612 1.00202 1.70089 1.46871 1.12813 1.27694 0.85495 0.78997 0.77313 0.79220 1.19110 1.20866 1.19123 1.20830 1.09423 0.96852 0.96576 1.20989 0.96695 0.93513 0.98367 0.93344 0.91403 0.93077 0.90910 0.90602 0.84526 0.85358 0.76204 0.92342 0.92351 0.92047 0.92029 0.92717 0.92727 0.99108 0.99110 0.92778 0.86311 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.90 71.98 0.71 -1.15 16 2 C -0.07 -1.03 6.06 29.85 0.18 -0.85 16 3 C -0.15 -2.96 5.14 -19.84 -0.10 -3.07 16 4 C -0.08 -1.46 9.69 22.25 0.22 -1.25 16 5 C -0.21 -4.53 9.90 22.40 0.22 -4.31 16 6 C 0.20 4.93 6.65 38.21 0.25 5.18 16 7 N -0.75 -18.59 5.73 -339.41 -1.95 -20.54 16 8 C 0.14 3.67 4.91 86.38 0.42 4.09 16 9 C -0.12 -3.72 5.33 30.59 0.16 -3.56 16 10 C -0.10 -3.81 5.15 30.59 0.16 -3.66 16 11 C 0.02 1.18 4.97 29.85 0.15 1.33 16 12 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 15 N -0.93 -57.41 13.29 21.44 0.28 -57.13 16 16 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 C -0.21 -5.21 9.31 22.40 0.21 -5.00 16 21 C -0.08 -1.62 9.69 22.25 0.22 -1.41 16 22 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 26 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 27 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 28 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.40 9.07 8.49 -92.71 -0.79 8.29 16 30 H 0.06 1.56 7.96 -2.39 -0.02 1.54 16 31 H 0.06 1.56 7.94 -2.38 -0.02 1.54 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 36 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.12 2.83 6.73 -2.91 -0.02 2.81 16 40 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -64.51 331.93 4.06 -60.45 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.20 Total: 15.16 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 3.50 Total: -44.42 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -1.66 Total: -77.67 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.51 4.06 -60.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385198038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.234 kcal (2) G-P(sol) polarization free energy of solvation -64.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds