Wall clock time and date at job start Mon Mar 30 2020 05:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.46929 * 2 1 4 4 C 1.38133 * 120.03523 * 265.00205 * 3 2 1 5 5 C 1.38265 * 120.07407 * 180.29677 * 4 3 2 6 6 C 1.38306 * 120.14784 * 359.44555 * 5 4 3 7 7 C 1.38089 * 120.07673 * 0.55309 * 6 5 4 8 8 C 1.38886 * 120.04213 * 85.01846 * 3 2 1 9 9 N 1.39676 * 120.07159 * 359.96227 * 8 3 2 10 10 C 1.46500 * 119.99671 * 179.97438 * 9 8 3 11 11 C 1.53005 * 109.46841 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.46884 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46884 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47047 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00142 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00237 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99824 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47171 * 89.99904 * 18 16 14 20 20 H 1.48497 * 109.46986 * 209.99690 * 18 16 14 21 21 H 1.48502 * 109.46927 * 329.99493 * 18 16 14 22 22 H 1.08994 * 109.47415 * 60.00687 * 1 2 3 23 23 H 1.09007 * 109.46944 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47246 * 299.99918 * 1 2 3 25 25 H 1.08997 * 109.47303 * 239.99549 * 2 1 3 26 26 H 1.09000 * 109.47102 * 119.99566 * 2 1 3 27 27 H 1.08002 * 119.95961 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.92315 * 179.69829 * 5 4 3 29 29 H 1.08003 * 119.96002 * 180.27453 * 6 5 4 30 30 H 1.07998 * 120.03755 * 179.74428 * 7 6 5 31 31 H 0.96994 * 120.00263 * 359.97438 * 9 8 3 32 32 H 1.08994 * 109.47477 * 299.99510 * 10 9 8 33 33 H 1.08998 * 109.47329 * 59.99840 * 10 9 8 34 34 H 1.08999 * 109.47016 * 299.99402 * 11 10 9 35 35 H 1.08998 * 109.47059 * 59.99957 * 11 10 9 36 36 H 1.09002 * 109.47170 * 299.99441 * 12 11 10 37 37 H 1.08998 * 109.47439 * 60.00028 * 12 11 10 38 38 H 1.08991 * 109.47170 * 299.99523 * 13 12 11 39 39 H 1.08998 * 109.47059 * 59.99796 * 13 12 11 40 40 H 0.97001 * 119.99930 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3609 2.0380 -1.1913 5 6 2.8277 3.3395 -1.1917 6 6 2.9563 4.0317 -0.0012 7 6 2.6295 3.4207 1.1933 8 6 2.1656 2.1112 1.1977 9 7 1.8337 1.4903 2.4041 10 6 1.9755 2.2199 3.6666 11 6 1.5479 1.3189 4.8270 12 6 1.6954 2.0810 6.1454 13 6 1.2672 1.1803 7.3058 14 6 1.4130 1.9307 8.6045 15 1 1.7746 2.9485 8.6025 16 6 1.0840 1.3185 9.7952 17 7 1.2117 1.9732 10.9286 18 14 0.4580 -0.4416 9.7986 19 1 1.6062 -1.3751 9.9225 20 1 -0.4644 -0.6366 10.9459 21 1 -0.2654 -0.7121 8.5303 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2574 1.5017 -2.1231 28 1 3.0886 3.8180 -2.1241 29 1 3.3169 5.0497 -0.0055 30 1 2.7340 3.9605 2.1229 31 1 1.5094 0.5762 2.4060 32 1 3.0159 2.5159 3.8004 33 1 1.3448 3.1086 3.6455 34 1 0.5073 1.0233 4.6931 35 1 2.1784 0.4300 4.8482 36 1 2.7359 2.3770 6.2796 37 1 1.0647 2.9697 6.1240 38 1 0.2267 0.8848 7.1715 39 1 1.8975 0.2914 7.3274 40 1 0.9798 1.5425 11.7663 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385249466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:33 Heat of formation + Delta-G solvation = -23.426810 kcal Electronic energy + Delta-G solvation = -17059.212312 eV Core-core repulsion = 14450.631013 eV Total energy + Delta-G solvation = -2608.581299 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61545 -37.59188 -35.81844 -34.97226 -34.08661 -31.34756 -30.40699 -28.99839 -26.39251 -24.79536 -23.65755 -22.09811 -21.94171 -21.36036 -18.91733 -18.10749 -17.16371 -16.64406 -16.36799 -16.20582 -15.11199 -15.05580 -14.92480 -14.67165 -14.57191 -14.34378 -13.97284 -13.74146 -13.30583 -13.19013 -12.91530 -12.69975 -12.46613 -12.32093 -12.17716 -11.78390 -11.72503 -11.52175 -11.46399 -11.39083 -11.27469 -10.88050 -10.77060 -9.59765 -8.30222 -8.22972 -6.34637 0.57316 0.79129 1.35413 1.37471 1.49542 2.35781 2.53789 3.02519 3.05235 3.91744 3.99264 4.00984 4.09226 4.25443 4.34407 4.38490 4.54402 4.56569 4.62088 4.70179 4.71084 4.74879 4.82027 4.95768 5.08977 5.09181 5.12365 5.13829 5.17395 5.24342 5.41444 5.52661 5.54027 5.62063 5.67042 5.71172 5.81080 6.06163 6.28180 6.47330 6.74078 6.87800 7.30276 8.86830 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035768 B = 0.003623 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.644371 B = 7725.693590 C = 8398.802143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.172 4.172 4 C -0.079 4.079 5 C -0.188 4.188 6 C -0.086 4.086 7 C -0.218 4.218 8 C 0.205 3.795 9 N -0.744 5.744 10 C 0.133 3.867 11 C -0.117 4.117 12 C -0.094 4.094 13 C -0.012 4.012 14 C -0.536 4.536 15 H 0.030 0.970 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.245 1.245 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.117 0.883 31 H 0.403 0.597 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 -3.561 -26.780 27.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.177 4.177 4 C -0.097 4.097 5 C -0.208 4.208 6 C -0.104 4.104 7 C -0.240 4.240 8 C 0.101 3.899 9 N -0.375 5.375 10 C 0.008 3.992 11 C -0.155 4.155 12 C -0.132 4.132 13 C -0.050 4.050 14 C -0.574 4.574 15 H 0.048 0.952 16 C -0.197 4.197 17 N -0.595 5.595 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.168 1.168 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.135 0.865 31 H 0.239 0.761 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.738 -3.453 -26.417 26.652 hybrid contribution -0.235 -0.454 0.939 1.069 sum 0.504 -3.907 -25.478 25.781 Atomic orbital electron populations 1.21740 0.94754 1.02082 1.01644 1.20360 0.96072 0.91841 1.02926 1.19630 1.08317 0.97913 0.91813 1.21068 0.96541 0.94974 0.97143 1.21153 1.05610 0.95656 0.98413 1.21137 0.97303 1.00005 0.91991 1.20848 1.09066 0.94771 0.99346 1.17904 0.93703 0.92148 0.86177 1.44791 1.73184 1.16617 1.02884 1.21246 1.00403 0.95056 0.82466 1.21675 1.02093 0.98755 0.92996 1.21241 1.00551 0.98278 0.93108 1.19542 0.96491 0.95802 0.93151 1.21576 1.43523 1.00124 0.92163 0.95175 1.26095 0.95385 1.03241 0.94934 1.70083 1.50763 1.39865 0.98764 0.85595 0.78998 0.78968 0.78693 1.19119 1.21048 1.16788 0.92536 0.91325 0.93897 0.89811 0.91829 0.84423 0.84693 0.84904 0.86501 0.76083 0.92554 0.92593 0.91223 0.91133 0.93127 0.93158 0.96150 0.96266 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 71.98 0.71 -1.53 16 2 C -0.07 -1.21 5.50 29.85 0.16 -1.05 16 3 C -0.17 -3.55 5.15 -19.73 -0.10 -3.65 16 4 C -0.08 -1.46 9.68 22.25 0.22 -1.24 16 5 C -0.19 -3.50 10.04 22.29 0.22 -3.27 16 6 C -0.09 -1.77 10.04 22.25 0.22 -1.54 16 7 C -0.22 -5.20 9.31 22.40 0.21 -4.99 16 8 C 0.20 4.87 6.63 38.21 0.25 5.12 16 9 N -0.74 -17.15 5.63 -339.42 -1.91 -19.07 16 10 C 0.13 3.34 4.91 86.38 0.42 3.76 16 11 C -0.12 -3.30 5.33 30.60 0.16 -3.14 16 12 C -0.09 -3.50 5.15 30.60 0.16 -3.35 16 13 C -0.01 -0.58 4.04 29.85 0.12 -0.45 16 14 C -0.54 -31.28 9.66 25.60 0.25 -31.04 16 15 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 16 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 17 N -0.95 -60.64 13.96 21.45 0.30 -60.35 16 18 Si 0.95 44.36 27.47 68.60 1.88 46.24 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 24 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.08 1.12 8.05 -2.39 -0.02 1.10 16 26 H 0.06 1.04 6.82 -2.39 -0.02 1.02 16 27 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 30 H 0.12 2.77 6.74 -2.91 -0.02 2.75 16 31 H 0.40 8.32 6.58 -92.71 -0.61 7.71 16 32 H 0.06 1.44 7.95 -2.39 -0.02 1.42 16 33 H 0.06 1.44 7.95 -2.39 -0.02 1.42 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 38 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 39 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 40 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -66.54 324.95 4.07 -62.46 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.33 Total: 16.64 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 3.48 Total: -45.93 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -1.61 Total: -79.41 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -66.54 4.07 -62.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385249466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.036 kcal (2) G-P(sol) polarization free energy of solvation -66.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds