Wall clock time and date at job start Mon Mar 30 2020 06:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 5 5 C 1.46906 * 110.99888 * 84.99977 * 4 2 1 6 6 C 1.52999 * 109.46897 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47481 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47432 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99822 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00335 * 179.97438 * 9 8 7 12 12 N 1.31523 * 119.99985 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00296 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46755 * 90.00312 * 13 11 9 15 15 H 1.48499 * 109.47293 * 210.00321 * 13 11 9 16 16 H 1.48496 * 109.47209 * 330.00359 * 13 11 9 17 17 C 1.50700 * 109.47410 * 120.00071 * 2 1 3 18 18 C 1.38236 * 120.00429 * 79.72020 * 17 2 1 19 19 C 1.38229 * 120.00179 * 179.81165 * 18 17 2 20 20 C 1.38234 * 120.00157 * 0.40510 * 19 18 17 21 21 C 1.38240 * 119.99821 * 359.85302 * 20 19 18 22 22 C 1.38231 * 120.00031 * 359.95812 * 21 20 19 23 23 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 24 24 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 26 26 H 1.00902 * 111.00533 * 321.04383 * 4 2 1 27 27 H 1.09000 * 109.47033 * 300.00113 * 5 4 2 28 28 H 1.09001 * 109.46544 * 60.00058 * 5 4 2 29 29 H 1.09000 * 109.47486 * 299.99976 * 6 5 4 30 30 H 1.09001 * 109.47362 * 60.00699 * 6 5 4 31 31 H 1.09000 * 109.46866 * 300.00212 * 7 6 5 32 32 H 1.08996 * 109.47261 * 59.99820 * 7 6 5 33 33 H 1.09004 * 109.46672 * 300.00239 * 8 7 6 34 34 H 1.08996 * 109.47340 * 59.99477 * 8 7 6 35 35 H 0.96996 * 119.99943 * 179.97438 * 12 11 9 36 36 H 1.08004 * 119.99504 * 0.02562 * 18 17 2 37 37 H 1.08006 * 120.00136 * 180.23112 * 19 18 17 38 38 H 1.08003 * 120.00380 * 179.82959 * 20 19 18 39 39 H 1.08000 * 119.99796 * 179.97438 * 21 20 19 40 40 H 1.07995 * 120.00136 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5962 -0.5331 -3.5741 7 6 2.6622 0.4201 -4.7692 8 6 3.1754 -0.3355 -5.9965 9 6 3.2398 0.6032 -7.1737 10 1 2.9438 1.6354 -7.0581 11 6 3.6765 0.1443 -8.3983 12 7 4.0364 -1.1128 -8.5393 13 14 3.7556 1.3077 -9.8577 14 1 5.0913 1.9551 -9.9026 15 1 3.5330 0.5444 -11.1119 16 1 2.7055 2.3484 -9.7186 17 6 2.0324 -0.7104 1.2304 18 6 2.0615 -2.0920 1.2676 19 6 2.5259 -2.7435 2.3947 20 6 2.9536 -2.0137 3.4880 21 6 2.9195 -0.6321 3.4530 22 6 2.4587 0.0195 2.3243 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.4496 -1.4981 -1.4100 27 1 1.0870 0.6162 -2.5525 28 1 2.7589 1.0461 -2.1182 29 1 3.5917 -0.9264 -3.3682 30 1 1.9201 -1.3569 -3.8030 31 1 1.6669 0.8139 -4.9752 32 1 3.3384 1.2437 -4.5401 33 1 4.1706 -0.7296 -5.7907 34 1 2.4988 -1.1588 -6.2254 35 1 4.3432 -1.4357 -9.4009 36 1 1.7244 -2.6622 0.4145 37 1 2.5521 -3.8229 2.4223 38 1 3.3139 -2.5227 4.3698 39 1 3.2533 -0.0619 4.3073 40 1 2.4325 1.0988 2.2968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385256880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:52 Heat of formation + Delta-G solvation = -21.563190 kcal Electronic energy + Delta-G solvation = -16830.295940 eV Core-core repulsion = 14221.795454 eV Total energy + Delta-G solvation = -2608.500486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37071 -38.10196 -36.26711 -34.50293 -32.43967 -31.69413 -30.22157 -28.95526 -26.18377 -24.44466 -23.57013 -22.66702 -21.90258 -21.17346 -18.46084 -17.79909 -16.77039 -16.52963 -16.33306 -16.19434 -15.52331 -15.05960 -14.76469 -14.47415 -14.19206 -14.12215 -13.89513 -13.62936 -13.25323 -13.05381 -13.00254 -12.82134 -12.41726 -12.32183 -12.18661 -12.09848 -11.76989 -11.68864 -11.37687 -11.29833 -10.97477 -10.55506 -9.74249 -9.58616 -9.30908 -8.20000 -6.31609 0.52779 0.58794 1.39358 1.41225 1.52305 2.40823 2.90979 3.12659 3.24377 3.84573 4.00517 4.13776 4.16952 4.24173 4.33122 4.35535 4.36755 4.53010 4.62613 4.66863 4.72120 4.80745 4.88416 4.91712 4.96472 5.14817 5.20065 5.24843 5.26551 5.28570 5.36626 5.55282 5.64070 5.69789 5.74843 5.78356 5.87144 6.12801 6.21582 6.25879 6.45283 6.86185 7.37775 8.91987 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.048076 B = 0.002995 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.266897 B = 9346.829819 C = 9556.839502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 H 0.084 0.916 4 N -0.690 5.690 5 C 0.073 3.927 6 C -0.105 4.105 7 C -0.096 4.096 8 C 0.023 3.977 9 C -0.545 4.545 10 H 0.060 0.940 11 C -0.004 4.004 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.262 1.262 17 C -0.078 4.078 18 C -0.115 4.115 19 C -0.132 4.132 20 C -0.134 4.134 21 C -0.128 4.128 22 C -0.130 4.130 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.344 0.656 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.050 0.950 33 H -0.012 1.012 34 H -0.010 1.010 35 H 0.264 0.736 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 0.925 24.318 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 H 0.103 0.897 4 N -0.321 5.321 5 C -0.056 4.056 6 C -0.143 4.143 7 C -0.135 4.135 8 C -0.014 4.014 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.201 4.201 12 N -0.576 5.576 13 Si 0.791 3.209 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.186 1.186 17 C -0.078 4.078 18 C -0.133 4.133 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.146 4.146 22 C -0.148 4.148 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.163 0.837 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.006 0.994 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.138 0.862 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.582 0.893 24.353 25.000 hybrid contribution -0.646 0.215 -1.314 1.480 sum -6.228 1.108 23.039 23.892 Atomic orbital electron populations 1.22412 0.95218 1.02644 1.02719 1.20458 0.93460 0.97131 0.87688 0.89737 1.60553 1.57835 1.10008 1.03679 1.21864 0.99464 0.95074 0.89216 1.21460 1.00971 0.98192 0.93716 1.21392 1.00028 0.97891 0.94142 1.19020 0.94345 0.94937 0.93134 1.21753 1.43584 0.97108 0.95842 0.92157 1.26036 0.94870 0.96887 1.02309 1.70110 1.45509 1.16471 1.25461 0.85425 0.78916 0.78666 0.77913 1.19728 1.20660 1.18635 1.19925 0.98906 0.94126 0.94888 1.21077 0.99881 0.94218 0.98162 1.21419 0.99165 1.00802 0.93641 1.21438 1.00162 0.94493 0.99118 1.21398 0.99633 0.95002 0.98522 1.21241 0.99661 1.00468 0.93468 0.92244 0.92116 0.91095 0.83720 0.94438 0.91246 0.92912 0.92784 0.92995 0.93141 0.99403 0.99196 0.92769 0.86172 0.84839 0.84337 0.84226 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.14 71.98 0.66 -2.30 16 2 C 0.12 2.49 2.79 44.17 0.12 2.62 16 3 H 0.08 1.72 7.66 -2.39 -0.02 1.70 16 4 N -0.69 -16.63 5.71 -495.45 -2.83 -19.46 16 5 C 0.07 1.97 5.48 86.30 0.47 2.44 16 6 C -0.11 -3.62 5.48 30.60 0.17 -3.45 16 7 C -0.10 -4.03 5.15 30.59 0.16 -3.87 16 8 C 0.02 1.24 4.97 29.84 0.15 1.39 16 9 C -0.54 -31.90 9.11 25.60 0.23 -31.66 16 10 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 11 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 12 N -0.94 -58.32 13.29 21.45 0.28 -58.04 16 13 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 17 C -0.08 -1.63 4.95 -19.86 -0.10 -1.72 16 18 C -0.12 -2.40 9.32 22.27 0.21 -2.19 16 19 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 20 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 21 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 22 C -0.13 -2.44 9.67 22.27 0.22 -2.22 16 23 H 0.06 1.04 7.45 -2.39 -0.02 1.03 16 24 H 0.06 1.03 8.13 -2.38 -0.02 1.01 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.34 7.76 7.82 -89.69 -0.70 7.06 16 27 H 0.04 0.95 7.44 -2.39 -0.02 0.93 16 28 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.12 2.40 7.26 -2.91 -0.02 2.38 16 37 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.13 2.01 8.04 -2.91 -0.02 1.99 16 Total: -1.00 -66.37 330.59 3.18 -63.19 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.28 Total: 14.15 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 3.42 Total: -46.86 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.54 Total: -77.50 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.37 3.18 -63.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385256880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.628 kcal (2) G-P(sol) polarization free energy of solvation -66.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds