Wall clock time and date at job start Mon Mar 30 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 N 1.46900 * 109.47127 * 119.99918 * 2 1 3 5 5 C 1.46893 * 111.00004 * 274.99933 * 4 2 1 6 6 C 1.53005 * 109.46723 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46822 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47324 * 180.02562 * 7 6 5 9 9 C 1.50691 * 109.47716 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99790 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00415 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99519 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99946 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47353 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47189 * 120.00636 * 13 11 9 16 16 H 1.48501 * 109.47216 * 240.00039 * 13 11 9 17 17 C 1.50696 * 109.47129 * 240.00401 * 2 1 3 18 18 C 1.38230 * 120.00346 * 99.99630 * 17 2 1 19 19 C 1.38235 * 120.00326 * 180.02562 * 18 17 2 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38239 * 120.00062 * 0.02871 * 20 19 18 22 22 C 1.38235 * 120.00123 * 359.97128 * 21 20 19 23 23 H 1.09002 * 109.47087 * 299.99750 * 1 2 3 24 24 H 1.09002 * 109.46941 * 59.99516 * 1 2 3 25 25 H 1.08997 * 109.47139 * 179.97438 * 1 2 3 26 26 H 1.00897 * 110.99853 * 151.04328 * 4 2 1 27 27 H 1.08994 * 109.47271 * 299.99531 * 5 4 2 28 28 H 1.08996 * 109.47462 * 60.00550 * 5 4 2 29 29 H 1.08998 * 109.47590 * 300.00052 * 6 5 4 30 30 H 1.08997 * 109.47133 * 60.00714 * 6 5 4 31 31 H 1.09003 * 109.47744 * 300.00041 * 7 6 5 32 32 H 1.09004 * 109.47024 * 60.00580 * 7 6 5 33 33 H 1.09003 * 109.46717 * 300.00637 * 8 7 6 34 34 H 1.09004 * 109.47024 * 59.99942 * 8 7 6 35 35 H 0.97003 * 119.99715 * 179.97438 * 12 11 9 36 36 H 1.08000 * 120.00356 * 359.97438 * 18 17 2 37 37 H 1.08000 * 120.00616 * 179.70664 * 19 18 17 38 38 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 39 39 H 1.08005 * 120.00087 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00181 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5951 -0.5333 3.5744 7 6 2.6611 0.4200 4.7694 8 6 3.1743 -0.3356 5.9968 9 6 3.2387 0.6030 7.1739 10 1 2.9428 1.6353 7.0583 11 6 3.6745 0.1439 8.3989 12 7 4.0343 -1.1132 8.5397 13 14 3.7537 1.3073 9.8581 14 1 3.2975 2.6573 9.4402 15 1 2.8742 0.8017 10.9426 16 1 5.1519 1.3876 10.3519 17 6 2.0323 -0.7103 -1.2305 18 6 2.4587 0.0195 -2.3243 19 6 2.9189 -0.6321 -3.4532 20 6 2.9534 -2.0135 -3.4881 21 6 2.5270 -2.7434 -2.3943 22 6 2.0667 -2.0919 -1.2653 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 2.9173 -1.1205 1.0287 27 1 2.7589 1.0461 2.1182 28 1 1.0871 0.6163 2.5526 29 1 1.9184 -1.3566 3.8029 30 1 3.5904 -0.9272 3.3691 31 1 3.3381 1.2431 4.5407 32 1 1.6659 0.8144 4.9749 33 1 2.4976 -1.1590 6.2257 34 1 4.1695 -0.7297 5.7910 35 1 4.3412 -1.4362 9.4014 36 1 2.4314 1.0988 -2.2973 37 1 3.2476 -0.0620 -4.3096 38 1 3.3126 -2.5227 -4.3702 39 1 2.5543 -3.8228 -2.4214 40 1 1.7340 -2.6621 -0.4106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385329812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:55 Heat of formation + Delta-G solvation = -4.907295 kcal Electronic energy + Delta-G solvation = -16832.646075 eV Core-core repulsion = 14224.867842 eV Total energy + Delta-G solvation = -2607.778232 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69374 -36.96885 -34.60915 -32.70691 -31.19018 -30.93932 -29.22473 -27.62311 -24.60867 -23.31901 -22.68748 -21.24671 -20.54501 -19.84459 -17.15934 -16.20478 -15.94527 -15.59957 -15.08105 -14.48888 -14.29422 -14.15689 -13.96766 -13.49962 -12.88890 -12.80980 -12.49114 -12.26785 -12.13762 -11.73409 -11.59920 -11.33669 -11.17652 -10.98367 -10.83071 -10.50448 -10.43155 -10.39701 -9.60415 -9.24389 -9.08891 -8.99841 -8.87307 -8.39967 -8.30826 -5.96003 -3.98008 1.15791 1.23567 3.33041 3.40279 3.44645 3.60445 4.15827 4.49464 4.51346 4.74773 4.82503 4.97555 5.15797 5.26583 5.32487 5.39476 5.43371 5.45224 5.60990 5.64387 5.74862 5.86544 5.89598 5.94807 6.14582 6.19688 6.27297 6.28274 6.34964 6.45040 6.55364 6.82722 6.85661 6.99639 7.08593 7.26148 7.43665 7.73700 7.89588 8.05470 8.48415 9.09811 9.65765 11.15435 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.048268 B = 0.002996 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.954933 B = 9343.999000 C = 9558.186087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.122 3.878 3 H 0.049 0.951 4 N -0.684 5.684 5 C 0.059 3.941 6 C -0.115 4.115 7 C -0.109 4.109 8 C 0.021 3.979 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.087 4.087 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.100 4.100 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.342 0.658 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.016 0.984 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 -0.095 -23.920 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.067 0.933 4 N -0.316 5.316 5 C -0.069 4.069 6 C -0.153 4.153 7 C -0.147 4.147 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.088 4.088 18 C -0.134 4.134 19 C -0.141 4.141 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.118 4.118 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.160 0.840 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.779 -0.453 -23.613 24.096 hybrid contribution 0.921 1.105 0.611 1.563 sum -3.858 0.652 -23.002 23.332 Atomic orbital electron populations 1.21774 0.93622 1.02589 1.01236 1.20449 0.96120 0.95180 0.87043 0.93262 1.60651 1.33517 1.33582 1.03852 1.22130 1.00602 0.93701 0.90515 1.21634 1.00567 0.99275 0.93834 1.21588 1.00191 0.97717 0.95188 1.19095 0.96186 0.95432 0.90925 1.21333 1.43280 0.96472 0.94652 0.92735 1.25040 0.95555 0.95090 0.98910 1.69981 1.44892 1.14387 1.24310 0.86556 0.77607 0.81196 0.82761 1.19777 1.21025 1.21050 1.20028 0.99043 0.94179 0.95521 1.21054 0.99282 0.99736 0.93371 1.21097 1.00286 0.94674 0.98056 1.21159 1.00289 0.94227 0.98586 1.21212 0.99225 0.99969 0.93620 1.21144 0.98439 0.93952 0.98280 0.92192 0.92808 0.91843 0.83997 0.95551 0.91174 0.91625 0.92786 0.93714 0.93452 0.96607 0.96746 0.93117 0.86292 0.86249 0.86329 0.86067 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.39 37.16 0.35 -1.06 16 2 C 0.12 1.35 2.82 -68.87 -0.19 1.15 16 3 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 4 N -0.68 -8.66 5.69 -107.96 -0.61 -9.27 16 5 C 0.06 0.85 5.48 -3.83 -0.02 0.83 16 6 C -0.12 -1.99 5.48 -26.73 -0.15 -2.14 16 7 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 8 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 9 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 10 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 11 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 13 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C -0.09 -0.92 4.71 -104.62 -0.49 -1.42 16 18 C -0.12 -1.12 9.67 -39.59 -0.38 -1.50 16 19 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 20 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 21 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 22 C -0.10 -1.04 9.01 -39.58 -0.36 -1.39 16 23 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.34 4.25 7.99 -39.29 -0.31 3.94 16 27 H 0.03 0.37 8.05 -51.93 -0.42 -0.04 16 28 H 0.07 1.00 7.44 -51.93 -0.39 0.62 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.12 0.99 8.04 -52.49 -0.42 0.56 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.13 1.38 7.72 -52.49 -0.41 0.98 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -30.67 330.94 -9.96 -40.63 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.92 Total: -0.67 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -3.13 Total: -25.91 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.12 Total: -36.03 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.67 -9.96 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385329812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.724 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds