Wall clock time and date at job start Mon Mar 30 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 N 1.46900 * 109.47127 * 119.99918 * 2 1 3 5 5 C 1.46893 * 111.00004 * 274.99933 * 4 2 1 6 6 C 1.53005 * 109.46723 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46822 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47324 * 180.02562 * 7 6 5 9 9 C 1.50691 * 109.47716 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99790 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00415 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99519 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99946 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47353 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47189 * 120.00636 * 13 11 9 16 16 H 1.48501 * 109.47216 * 240.00039 * 13 11 9 17 17 C 1.50696 * 109.47129 * 240.00401 * 2 1 3 18 18 C 1.38230 * 120.00346 * 99.99630 * 17 2 1 19 19 C 1.38235 * 120.00326 * 180.02562 * 18 17 2 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38239 * 120.00062 * 0.02871 * 20 19 18 22 22 C 1.38235 * 120.00123 * 359.97128 * 21 20 19 23 23 H 1.09002 * 109.47087 * 299.99750 * 1 2 3 24 24 H 1.09002 * 109.46941 * 59.99516 * 1 2 3 25 25 H 1.08997 * 109.47139 * 179.97438 * 1 2 3 26 26 H 1.00897 * 110.99853 * 151.04328 * 4 2 1 27 27 H 1.08994 * 109.47271 * 299.99531 * 5 4 2 28 28 H 1.08996 * 109.47462 * 60.00550 * 5 4 2 29 29 H 1.08998 * 109.47590 * 300.00052 * 6 5 4 30 30 H 1.08997 * 109.47133 * 60.00714 * 6 5 4 31 31 H 1.09003 * 109.47744 * 300.00041 * 7 6 5 32 32 H 1.09004 * 109.47024 * 60.00580 * 7 6 5 33 33 H 1.09003 * 109.46717 * 300.00637 * 8 7 6 34 34 H 1.09004 * 109.47024 * 59.99942 * 8 7 6 35 35 H 0.97003 * 119.99715 * 179.97438 * 12 11 9 36 36 H 1.08000 * 120.00356 * 359.97438 * 18 17 2 37 37 H 1.08000 * 120.00616 * 179.70664 * 19 18 17 38 38 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 39 39 H 1.08005 * 120.00087 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00181 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5951 -0.5333 3.5744 7 6 2.6611 0.4200 4.7694 8 6 3.1743 -0.3356 5.9968 9 6 3.2387 0.6030 7.1739 10 1 2.9428 1.6353 7.0583 11 6 3.6745 0.1439 8.3989 12 7 4.0343 -1.1132 8.5397 13 14 3.7537 1.3073 9.8581 14 1 3.2975 2.6573 9.4402 15 1 2.8742 0.8017 10.9426 16 1 5.1519 1.3876 10.3519 17 6 2.0323 -0.7103 -1.2305 18 6 2.4587 0.0195 -2.3243 19 6 2.9189 -0.6321 -3.4532 20 6 2.9534 -2.0135 -3.4881 21 6 2.5270 -2.7434 -2.3943 22 6 2.0667 -2.0919 -1.2653 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 2.9173 -1.1205 1.0287 27 1 2.7589 1.0461 2.1182 28 1 1.0871 0.6163 2.5526 29 1 1.9184 -1.3566 3.8029 30 1 3.5904 -0.9272 3.3691 31 1 3.3381 1.2431 4.5407 32 1 1.6659 0.8144 4.9749 33 1 2.4976 -1.1590 6.2257 34 1 4.1695 -0.7297 5.7910 35 1 4.3412 -1.4362 9.4014 36 1 2.4314 1.0988 -2.2973 37 1 3.2476 -0.0620 -4.3096 38 1 3.3126 -2.5227 -4.3702 39 1 2.5543 -3.8228 -2.4214 40 1 1.7340 -2.6621 -0.4106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385329812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:55 Heat of formation + Delta-G solvation = -21.369331 kcal Electronic energy + Delta-G solvation = -16833.359922 eV Core-core repulsion = 14224.867842 eV Total energy + Delta-G solvation = -2608.492080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.44210 -38.03119 -36.24002 -34.50564 -32.46159 -31.74036 -30.19343 -29.16158 -26.27650 -24.31701 -23.57386 -22.61486 -21.86050 -21.07841 -18.47317 -17.87412 -16.95934 -16.58752 -16.34368 -16.16380 -15.46436 -15.10288 -14.87581 -14.48192 -14.18988 -14.11274 -13.86414 -13.45445 -13.37443 -12.97047 -12.91804 -12.75420 -12.59975 -12.26539 -12.16970 -12.09493 -11.84637 -11.60712 -11.36555 -11.29649 -10.97706 -10.56204 -9.79144 -9.63049 -9.40814 -8.20238 -6.31685 0.44569 0.53173 1.39376 1.39906 1.53468 2.40734 2.88494 3.12506 3.16987 3.70875 4.03664 4.12645 4.18828 4.20186 4.32642 4.36262 4.48611 4.55428 4.65043 4.66597 4.72443 4.76420 4.91374 4.92704 4.99355 5.13974 5.20201 5.23210 5.28122 5.35189 5.36188 5.55063 5.58636 5.65818 5.67200 5.77971 5.86956 6.10848 6.16786 6.25786 6.42616 6.86167 7.37679 8.91954 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.048268 B = 0.002996 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.954933 B = 9343.999000 C = 9558.186087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.124 3.876 3 H 0.052 0.948 4 N -0.687 5.687 5 C 0.071 3.929 6 C -0.105 4.105 7 C -0.096 4.096 8 C 0.023 3.977 9 C -0.544 4.544 10 H 0.060 0.940 11 C -0.004 4.004 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.261 1.261 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.100 4.100 18 C -0.125 4.125 19 C -0.127 4.127 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.114 4.114 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.342 0.658 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.051 0.949 33 H -0.011 1.011 34 H -0.011 1.011 35 H 0.264 0.736 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.297 1.153 -25.052 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.015 3.985 3 H 0.070 0.930 4 N -0.319 5.319 5 C -0.058 4.058 6 C -0.143 4.143 7 C -0.135 4.135 8 C -0.014 4.014 9 C -0.582 4.582 10 H 0.078 0.922 11 C -0.201 4.201 12 N -0.575 5.575 13 Si 0.791 3.209 14 H -0.185 1.185 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.100 4.100 18 C -0.144 4.144 19 C -0.145 4.145 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.133 4.133 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.161 0.839 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.072 0.928 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.867 0.800 -24.765 25.251 hybrid contribution 0.960 0.657 0.909 1.476 sum -3.907 1.457 -23.856 24.217 Atomic orbital electron populations 1.21750 0.93266 1.02233 1.01662 1.20452 0.96345 0.95148 0.86567 0.93001 1.60603 1.33658 1.33452 1.04194 1.21899 1.00625 0.93471 0.89762 1.21455 1.00478 0.98426 0.93911 1.21396 1.00047 0.97823 0.94200 1.19024 0.94353 0.94937 0.93133 1.21777 1.43504 0.97085 0.95825 0.92194 1.26034 0.94885 0.96897 1.02305 1.70115 1.45564 1.16462 1.25385 0.85372 0.77916 0.79097 0.78497 1.18524 1.20293 1.20281 1.20022 0.99997 0.94309 0.95674 1.21265 0.99231 1.00469 0.93402 1.21420 0.99586 0.95035 0.98439 1.21489 0.99570 0.94448 0.99079 1.21455 0.98960 1.00938 0.93483 1.21181 0.99312 0.94088 0.98672 0.92645 0.91463 0.92574 0.83909 0.94989 0.90860 0.92552 0.93029 0.93171 0.93013 0.99257 0.99273 0.92768 0.85134 0.84056 0.84099 0.84639 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.39 71.98 0.68 -1.95 16 2 C 0.12 2.62 2.82 44.17 0.12 2.75 16 3 H 0.05 1.08 7.66 -2.39 -0.02 1.06 16 4 N -0.69 -16.96 5.69 -495.48 -2.82 -19.78 16 5 C 0.07 1.98 5.48 86.31 0.47 2.45 16 6 C -0.10 -3.63 5.48 30.60 0.17 -3.46 16 7 C -0.10 -4.06 5.15 30.60 0.16 -3.90 16 8 C 0.02 1.24 4.97 29.85 0.15 1.39 16 9 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 10 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 11 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 12 N -0.93 -58.29 13.29 21.45 0.28 -58.00 16 13 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C -0.10 -2.01 4.71 -19.87 -0.09 -2.10 16 18 C -0.13 -2.21 9.67 22.27 0.22 -2.00 16 19 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 20 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 21 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 22 C -0.11 -2.31 9.01 22.27 0.20 -2.11 16 23 H 0.05 1.14 7.45 -2.39 -0.02 1.12 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.34 8.39 7.99 -89.70 -0.72 7.67 16 27 H 0.03 0.86 8.05 -2.39 -0.02 0.84 16 28 H 0.07 2.00 7.44 -2.39 -0.02 1.98 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 35 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.13 1.91 8.04 -2.91 -0.02 1.89 16 37 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 40 H 0.12 2.62 7.72 -2.91 -0.02 2.60 16 Total: -1.00 -65.64 330.94 3.19 -62.44 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.27 Total: 14.09 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 3.44 Total: -45.84 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -2.54 Total: -77.79 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.64 3.19 -62.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385329812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.075 kcal (2) G-P(sol) polarization free energy of solvation -65.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds