Wall clock time and date at job start Mon Mar 30 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47488 * 97.04876 * 3 2 1 5 5 C 1.53001 * 109.47329 * 337.04645 * 3 2 1 6 6 C 1.53002 * 109.47172 * 299.99869 * 5 3 2 7 7 C 1.52997 * 109.47349 * 300.00344 * 6 5 3 8 8 C 1.53001 * 109.47265 * 59.99713 * 7 6 5 9 9 H 1.08997 * 109.46825 * 60.00168 * 8 7 6 10 10 N 1.46903 * 109.46889 * 180.02562 * 8 7 6 11 11 C 1.46901 * 110.99967 * 271.89105 * 10 8 7 12 12 C 1.52996 * 109.47248 * 184.24965 * 11 10 8 13 13 C 1.50702 * 115.54752 * 65.32255 * 12 11 10 14 14 H 1.08003 * 119.99815 * 265.40529 * 13 12 11 15 15 C 1.37869 * 119.99959 * 85.40719 * 13 12 11 16 16 N 1.31515 * 120.00338 * 184.53328 * 15 13 12 17 17 Si 1.86800 * 120.00090 * 4.53627 * 15 13 12 18 18 H 1.48498 * 109.47357 * 94.38587 * 17 15 13 19 19 H 1.48496 * 109.47112 * 214.38231 * 17 15 13 20 20 H 1.48500 * 109.47151 * 334.38259 * 17 15 13 21 21 C 1.53008 * 117.49836 * 279.65485 * 12 11 10 22 22 C 1.53000 * 117.50087 * 210.99711 * 12 11 10 23 23 C 1.52993 * 109.47035 * 300.00291 * 8 7 6 24 24 H 4.18737 * 15.03801 * 0.02562 * 4 2 1 25 25 H 1.08998 * 109.47166 * 180.02562 * 5 3 2 26 26 H 1.08992 * 109.47132 * 59.99961 * 5 3 2 27 27 H 1.09007 * 109.46625 * 60.00068 * 6 5 3 28 28 H 1.08994 * 109.47228 * 179.97438 * 6 5 3 29 29 H 1.09005 * 109.46919 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47235 * 299.99502 * 7 6 5 31 31 H 1.00899 * 110.99534 * 147.94217 * 10 8 7 32 32 H 1.08999 * 109.47249 * 304.25217 * 11 10 8 33 33 H 1.09003 * 109.46811 * 64.25302 * 11 10 8 34 34 H 0.96993 * 120.00834 * 180.02562 * 16 15 13 35 35 H 1.08998 * 117.49764 * 359.97438 * 21 12 11 36 36 H 1.08997 * 117.49512 * 145.01756 * 21 12 11 37 37 H 1.09004 * 117.49587 * 214.98166 * 22 12 11 38 38 H 1.08999 * 117.49849 * 359.97438 * 22 12 11 39 39 H 1.09006 * 109.47293 * 299.99839 * 23 8 7 40 40 H 1.09000 * 109.47470 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0093 0.1269 -1.0198 5 6 3.1566 -1.3274 0.5625 6 6 2.6467 -1.5046 1.9942 7 6 3.1561 -0.3530 2.8632 8 6 2.6454 0.9750 2.3007 9 1 1.5555 0.9744 2.3007 10 7 3.1351 2.0807 3.1348 11 6 2.2131 2.3500 4.2463 12 6 2.6998 3.5716 5.0282 13 6 2.6794 4.8763 4.2742 14 1 3.5690 5.2217 3.7686 15 6 1.5251 5.6289 4.2298 16 7 1.4800 6.7215 3.4992 17 14 0.0250 5.0967 5.2075 18 1 0.0193 5.7887 6.5214 19 1 -1.2063 5.4503 4.4566 20 1 0.0693 3.6279 5.4219 21 6 3.8261 3.3589 6.0417 22 6 2.3977 3.6173 6.5274 23 6 3.1553 1.1522 0.8691 24 1 -1.0500 0.0005 0.0002 25 1 4.2466 -1.3267 0.5630 26 1 2.7937 -2.1477 -0.0565 27 1 1.5566 -1.5051 1.9941 28 1 3.0101 -2.4509 2.3948 29 1 2.7924 -0.4791 3.8831 30 1 4.2461 -0.3525 2.8633 31 1 3.2870 2.9109 2.5818 32 1 1.2157 2.5447 3.8520 33 1 2.1795 1.4846 4.9083 34 1 0.6681 7.2512 3.4683 35 1 4.2200 2.3486 6.1517 36 1 4.5521 4.1628 6.1634 37 1 2.1844 4.5910 6.9683 38 1 1.8517 2.7771 6.9565 39 1 4.2454 1.1527 0.8691 40 1 2.7919 2.0985 0.4685 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393757268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:27 Heat of formation + Delta-G solvation = 59.040780 kcal Electronic energy + Delta-G solvation = -18286.315921 eV Core-core repulsion = 15681.310686 eV Total energy + Delta-G solvation = -2605.005236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.14197 -37.07874 -34.19079 -32.45122 -32.06235 -30.25667 -28.94614 -25.79941 -24.28987 -22.88102 -21.74972 -21.39372 -20.11408 -18.90136 -17.28004 -16.17876 -15.71568 -14.93664 -14.70613 -14.45886 -14.28370 -14.16558 -13.58026 -12.94475 -12.69405 -12.34308 -12.21531 -12.05733 -11.85663 -11.64487 -11.09526 -11.04689 -10.83185 -10.64052 -10.52039 -10.36464 -10.35015 -10.05085 -9.85862 -9.66626 -9.37038 -8.97404 -8.57024 -8.36543 -7.60716 -6.09960 -4.12266 2.93733 2.95903 3.29904 3.39409 3.46536 4.35237 4.44546 4.59765 4.84454 4.91050 5.07772 5.21242 5.28267 5.34098 5.47212 5.58922 5.63307 5.71829 5.79363 5.87712 5.92183 6.03413 6.14461 6.17629 6.22973 6.26606 6.28042 6.37867 6.46231 6.50533 6.55969 6.59880 6.69490 6.85361 7.16768 7.24964 7.73412 7.80173 7.87956 8.24359 8.54457 8.94779 9.54834 11.01585 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024151 B = 0.006616 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.109793 B = 4231.118343 C = 4694.550026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.167 4.167 3 C 0.021 3.979 4 H 0.090 0.910 5 C -0.108 4.108 6 C -0.120 4.120 7 C -0.104 4.104 8 C 0.086 3.914 9 H 0.040 0.960 10 N -0.676 5.676 11 C 0.103 3.897 12 C 0.005 3.995 13 C -0.487 4.487 14 H 0.078 0.922 15 C 0.077 3.923 16 N -0.899 5.899 17 Si 0.877 3.123 18 H -0.280 1.280 19 H -0.296 1.296 20 H -0.256 1.256 21 C -0.169 4.169 22 C -0.206 4.206 23 C -0.114 4.114 24 H 0.213 0.787 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.354 0.646 32 H 0.022 0.978 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -15.198 -4.756 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.167 4.167 3 C 0.003 3.997 4 H 0.108 0.892 5 C -0.146 4.146 6 C -0.158 4.158 7 C -0.143 4.143 8 C -0.024 4.024 9 H 0.058 0.942 10 N -0.308 5.308 11 C -0.027 4.027 12 C 0.003 3.997 13 C -0.524 4.524 14 H 0.096 0.904 15 C -0.126 4.126 16 N -0.536 5.536 17 Si 0.705 3.295 18 H -0.207 1.207 19 H -0.224 1.224 20 H -0.180 1.180 21 C -0.206 4.206 22 C -0.244 4.244 23 C -0.152 4.152 24 H 0.230 0.770 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.174 0.826 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.481 -15.423 -4.441 16.118 hybrid contribution -1.990 0.384 0.133 2.031 sum -0.509 -15.039 -4.308 15.652 Atomic orbital electron populations 1.24826 0.95899 1.01189 1.01877 1.22993 0.94272 0.99935 0.99481 1.18382 0.84724 0.96485 1.00142 0.89179 1.21543 1.00811 0.95607 0.96598 1.21566 1.00888 0.98467 0.94924 1.21515 1.01152 0.93164 0.98430 1.21485 0.97088 0.92560 0.91275 0.94234 1.60486 1.47508 1.10192 1.12637 1.21615 0.92852 0.95796 0.92416 1.19387 0.98253 0.95100 0.86914 1.20319 0.98752 1.01322 1.32012 0.90379 1.24987 0.98386 0.94516 0.94664 1.69905 1.28387 1.15840 1.39469 0.86870 0.82156 0.80376 0.80085 1.20658 1.22355 1.17992 1.22701 0.91080 1.00004 1.06824 1.22976 0.99789 1.00751 1.00835 1.21766 1.01545 0.97244 0.94620 0.77011 0.90858 0.92033 0.92205 0.92124 0.92383 0.91382 0.82569 0.95975 0.93837 0.92691 0.90892 0.90012 0.89839 0.91287 0.90117 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.88 19.25 29.55 0.57 -2.31 16 2 C -0.17 -2.28 10.06 -37.12 -0.37 -2.65 16 3 C 0.02 0.25 3.07 -93.41 -0.29 -0.03 16 4 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 5 C -0.11 -1.13 5.43 -26.73 -0.15 -1.27 16 6 C -0.12 -1.41 5.70 -26.73 -0.15 -1.56 16 7 C -0.10 -1.45 5.47 -26.73 -0.15 -1.60 16 8 C 0.09 1.38 2.29 -67.71 -0.15 1.22 16 9 H 0.04 0.71 6.77 -51.93 -0.35 0.36 16 10 N -0.68 -12.89 6.35 -106.73 -0.68 -13.57 16 11 C 0.10 2.18 5.04 -3.83 -0.02 2.16 16 12 C 0.00 0.11 0.99 -155.66 -0.15 -0.05 16 13 C -0.49 -13.34 8.75 -34.44 -0.30 -13.64 16 14 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 17 Si 0.88 21.89 24.92 -169.99 -4.24 17.66 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.26 -6.10 5.72 56.52 0.32 -5.77 16 21 C -0.17 -3.55 9.96 -26.69 -0.27 -3.82 16 22 C -0.21 -4.50 7.29 -26.69 -0.19 -4.69 16 23 C -0.11 -1.57 4.66 -26.73 -0.12 -1.70 16 24 H 0.21 2.11 7.80 -54.09 -0.42 1.69 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.76 7.23 -51.92 -0.38 0.39 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.86 7.76 -51.93 -0.40 0.46 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.35 7.31 7.63 -39.29 -0.30 7.01 16 32 H 0.02 0.51 6.94 -51.93 -0.36 0.15 16 33 H 0.04 0.87 7.71 -51.93 -0.40 0.47 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.08 1.90 7.08 -51.93 -0.37 1.54 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -29.43 315.27 -8.08 -37.51 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.84 Total: 7.86 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -1.85 Total: -27.85 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.10 Total: -39.93 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.24 Total: 17.66 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.43 -8.08 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393757268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.550 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds