Wall clock time and date at job start Mon Mar 30 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47488 * 97.04876 * 3 2 1 5 5 C 1.53001 * 109.47329 * 337.04645 * 3 2 1 6 6 C 1.53002 * 109.47172 * 299.99869 * 5 3 2 7 7 C 1.52997 * 109.47349 * 300.00344 * 6 5 3 8 8 C 1.53001 * 109.47265 * 59.99713 * 7 6 5 9 9 H 1.08997 * 109.46825 * 60.00168 * 8 7 6 10 10 N 1.46903 * 109.46889 * 180.02562 * 8 7 6 11 11 C 1.46901 * 110.99967 * 271.89105 * 10 8 7 12 12 C 1.52996 * 109.47248 * 184.24965 * 11 10 8 13 13 C 1.50702 * 115.54752 * 65.32255 * 12 11 10 14 14 H 1.08003 * 119.99815 * 265.40529 * 13 12 11 15 15 C 1.37869 * 119.99959 * 85.40719 * 13 12 11 16 16 N 1.31515 * 120.00338 * 184.53328 * 15 13 12 17 17 Si 1.86800 * 120.00090 * 4.53627 * 15 13 12 18 18 H 1.48498 * 109.47357 * 94.38587 * 17 15 13 19 19 H 1.48496 * 109.47112 * 214.38231 * 17 15 13 20 20 H 1.48500 * 109.47151 * 334.38259 * 17 15 13 21 21 C 1.53008 * 117.49836 * 279.65485 * 12 11 10 22 22 C 1.53000 * 117.50087 * 210.99711 * 12 11 10 23 23 C 1.52993 * 109.47035 * 300.00291 * 8 7 6 24 24 H 4.18737 * 15.03801 * 0.02562 * 4 2 1 25 25 H 1.08998 * 109.47166 * 180.02562 * 5 3 2 26 26 H 1.08992 * 109.47132 * 59.99961 * 5 3 2 27 27 H 1.09007 * 109.46625 * 60.00068 * 6 5 3 28 28 H 1.08994 * 109.47228 * 179.97438 * 6 5 3 29 29 H 1.09005 * 109.46919 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47235 * 299.99502 * 7 6 5 31 31 H 1.00899 * 110.99534 * 147.94217 * 10 8 7 32 32 H 1.08999 * 109.47249 * 304.25217 * 11 10 8 33 33 H 1.09003 * 109.46811 * 64.25302 * 11 10 8 34 34 H 0.96993 * 120.00834 * 180.02562 * 16 15 13 35 35 H 1.08998 * 117.49764 * 359.97438 * 21 12 11 36 36 H 1.08997 * 117.49512 * 145.01756 * 21 12 11 37 37 H 1.09004 * 117.49587 * 214.98166 * 22 12 11 38 38 H 1.08999 * 117.49849 * 359.97438 * 22 12 11 39 39 H 1.09006 * 109.47293 * 299.99839 * 23 8 7 40 40 H 1.09000 * 109.47470 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0093 0.1269 -1.0198 5 6 3.1566 -1.3274 0.5625 6 6 2.6467 -1.5046 1.9942 7 6 3.1561 -0.3530 2.8632 8 6 2.6454 0.9750 2.3007 9 1 1.5555 0.9744 2.3007 10 7 3.1351 2.0807 3.1348 11 6 2.2131 2.3500 4.2463 12 6 2.6998 3.5716 5.0282 13 6 2.6794 4.8763 4.2742 14 1 3.5690 5.2217 3.7686 15 6 1.5251 5.6289 4.2298 16 7 1.4800 6.7215 3.4992 17 14 0.0250 5.0967 5.2075 18 1 0.0193 5.7887 6.5214 19 1 -1.2063 5.4503 4.4566 20 1 0.0693 3.6279 5.4219 21 6 3.8261 3.3589 6.0417 22 6 2.3977 3.6173 6.5274 23 6 3.1553 1.1522 0.8691 24 1 -1.0500 0.0005 0.0002 25 1 4.2466 -1.3267 0.5630 26 1 2.7937 -2.1477 -0.0565 27 1 1.5566 -1.5051 1.9941 28 1 3.0101 -2.4509 2.3948 29 1 2.7924 -0.4791 3.8831 30 1 4.2461 -0.3525 2.8633 31 1 3.2870 2.9109 2.5818 32 1 1.2157 2.5447 3.8520 33 1 2.1795 1.4846 4.9083 34 1 0.6681 7.2512 3.4683 35 1 4.2200 2.3486 6.1517 36 1 4.5521 4.1628 6.1634 37 1 2.1844 4.5910 6.9683 38 1 1.8517 2.7771 6.9565 39 1 4.2454 1.1527 0.8691 40 1 2.7919 2.0985 0.4685 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393757268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:26 Heat of formation + Delta-G solvation = 41.523533 kcal Electronic energy + Delta-G solvation = -18287.075526 eV Core-core repulsion = 15681.310686 eV Total energy + Delta-G solvation = -2605.764841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28016 -38.77409 -35.55068 -34.23423 -33.48844 -31.29499 -30.19546 -27.82650 -25.85118 -23.97436 -23.30702 -22.62739 -21.26901 -20.80644 -18.40747 -18.05662 -16.89843 -16.82817 -16.06847 -15.84409 -15.37431 -15.27930 -15.19239 -14.76207 -14.38111 -13.66984 -13.57322 -13.36513 -13.21301 -13.02131 -12.77874 -12.62763 -12.15586 -12.13552 -11.92321 -11.64968 -11.59281 -11.46834 -11.32987 -10.97307 -10.90134 -10.70214 -10.53740 -10.22340 -9.17530 -8.30641 -6.35844 1.30657 1.34574 1.47599 1.91874 1.94752 2.35049 3.02576 3.08871 3.43359 3.57543 3.82218 3.94547 4.15915 4.22832 4.30435 4.33193 4.43984 4.49704 4.53620 4.63132 4.70495 4.73477 4.77878 4.82938 4.88519 4.96513 5.09826 5.14105 5.18569 5.26835 5.28370 5.34598 5.37090 5.41905 5.52943 5.55361 5.74282 6.29815 6.38178 6.58696 6.74040 6.75345 7.33979 8.84431 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024151 B = 0.006616 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.109793 B = 4231.118343 C = 4694.550026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.191 4.191 3 C 0.021 3.979 4 H 0.109 0.891 5 C -0.103 4.103 6 C -0.116 4.116 7 C -0.098 4.098 8 C 0.085 3.915 9 H 0.018 0.982 10 N -0.675 5.675 11 C 0.113 3.887 12 C -0.021 4.021 13 C -0.479 4.479 14 H 0.037 0.963 15 C 0.022 3.978 16 N -0.947 5.947 17 Si 0.933 3.067 18 H -0.273 1.273 19 H -0.301 1.301 20 H -0.235 1.235 21 C -0.151 4.151 22 C -0.200 4.200 23 C -0.110 4.110 24 H 0.234 0.766 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.339 0.661 32 H -0.001 1.001 33 H 0.063 0.937 34 H 0.264 0.736 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -18.005 -4.084 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.191 4.191 3 C 0.003 3.997 4 H 0.127 0.873 5 C -0.140 4.140 6 C -0.154 4.154 7 C -0.136 4.136 8 C -0.025 4.025 9 H 0.036 0.964 10 N -0.305 5.305 11 C -0.017 4.017 12 C -0.023 4.023 13 C -0.517 4.517 14 H 0.055 0.945 15 C -0.175 4.175 16 N -0.587 5.587 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.229 1.229 20 H -0.158 1.158 21 C -0.188 4.188 22 C -0.238 4.238 23 C -0.148 4.148 24 H 0.250 0.750 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.017 0.983 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.616 -18.264 -3.756 18.716 hybrid contribution -1.950 1.290 -0.121 2.342 sum -0.334 -16.974 -3.877 17.414 Atomic orbital electron populations 1.25558 0.96934 1.00781 1.01517 1.23579 0.95278 1.00381 0.99904 1.18491 0.83906 0.96492 1.00810 0.87275 1.21553 1.01843 0.94931 0.95717 1.21538 1.00054 0.98324 0.95475 1.21465 1.01428 0.92486 0.98257 1.21599 0.95894 0.92588 0.92370 0.96434 1.60572 1.47075 1.10204 1.12697 1.21448 0.91875 0.95364 0.93020 1.19332 1.01295 0.93893 0.87734 1.20451 0.97025 1.02958 1.31285 0.94501 1.25751 1.01434 0.94556 0.95752 1.70041 1.29311 1.17569 1.41748 0.85969 0.78315 0.81190 0.78703 1.19860 1.22872 1.15802 1.22715 0.90535 1.01237 1.04329 1.23025 1.00555 1.01269 0.98943 1.21722 1.02203 0.97328 0.93529 0.74959 0.89056 0.90506 0.93559 0.90022 0.93302 0.90701 0.84212 0.98290 0.91906 0.92755 0.88211 0.90759 0.91000 0.88585 0.88842 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.83 19.25 74.32 1.43 -4.39 16 2 C -0.19 -5.03 10.06 31.13 0.31 -4.71 16 3 C 0.02 0.47 3.07 -12.60 -0.04 0.43 16 4 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 5 C -0.10 -1.82 5.43 30.60 0.17 -1.66 16 6 C -0.12 -2.39 5.70 30.59 0.17 -2.21 16 7 C -0.10 -2.52 5.47 30.59 0.17 -2.35 16 8 C 0.09 2.66 2.29 44.91 0.10 2.77 16 9 H 0.02 0.63 6.77 -2.39 -0.02 0.62 16 10 N -0.68 -25.51 6.35 -491.58 -3.12 -28.63 16 11 C 0.11 4.67 5.04 86.30 0.44 5.10 16 12 C -0.02 -0.98 0.99 -52.93 -0.05 -1.03 16 13 C -0.48 -26.93 8.75 25.60 0.22 -26.70 16 14 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 15 C 0.02 1.30 5.47 84.65 0.46 1.77 16 16 N -0.95 -59.17 13.96 21.44 0.30 -58.87 16 17 Si 0.93 45.23 24.92 68.60 1.71 46.94 16 18 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 19 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 20 H -0.24 -10.51 5.72 99.48 0.57 -9.94 16 21 C -0.15 -6.03 9.96 30.62 0.30 -5.73 16 22 C -0.20 -8.24 7.29 30.62 0.22 -8.02 16 23 C -0.11 -2.95 4.66 30.59 0.14 -2.81 16 24 H 0.23 4.37 7.80 -4.42 -0.03 4.34 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.09 7.23 -2.38 -0.02 1.07 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.33 7.76 -2.38 -0.02 1.31 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.34 14.40 7.63 -89.69 -0.68 13.72 16 32 H 0.00 -0.05 6.94 -2.39 -0.02 -0.06 16 33 H 0.06 2.36 7.71 -2.39 -0.02 2.34 16 34 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 35 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.07 3.13 7.08 -2.39 -0.02 3.12 16 38 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 Total: -1.00 -64.65 315.27 3.12 -61.53 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.17 Total: 28.58 kcal Atomic # 6 Polarization: -53.61 SS G_CDS: 4.06 Total: -49.55 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -2.82 Total: -87.50 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.71 Total: 46.94 kcal Total: -64.65 3.12 -61.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393757268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.053 kcal (2) G-P(sol) polarization free energy of solvation -64.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds