Wall clock time and date at job start Mon Mar 30 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08998 * 109.46774 * 141.71305 * 3 2 1 5 5 C 1.52996 * 109.47234 * 21.71129 * 3 2 1 6 6 C 1.53008 * 109.46744 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47191 * 60.00047 * 6 5 3 8 8 C 1.52998 * 109.46889 * 299.99770 * 7 6 5 9 9 H 1.08998 * 109.47460 * 300.00074 * 8 7 6 10 10 N 1.46908 * 109.47084 * 179.97438 * 8 7 6 11 11 C 1.46901 * 110.99798 * 85.00102 * 10 8 7 12 12 C 1.52990 * 109.47170 * 185.29237 * 11 10 8 13 13 C 1.50702 * 115.55338 * 65.04598 * 12 11 10 14 14 H 1.08004 * 120.00139 * 265.57625 * 13 12 11 15 15 C 1.37880 * 119.99672 * 85.57323 * 13 12 11 16 16 N 1.31505 * 120.00152 * 353.74712 * 15 13 12 17 17 Si 1.86799 * 119.99729 * 173.75000 * 15 13 12 18 18 H 1.48501 * 109.47264 * 59.99939 * 17 15 13 19 19 H 1.48502 * 109.47319 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47339 * 299.99851 * 17 15 13 21 21 C 1.53003 * 117.49741 * 279.37774 * 12 11 10 22 22 C 1.53004 * 117.50175 * 210.72070 * 12 11 10 23 23 C 1.53000 * 109.46973 * 261.71009 * 3 2 1 24 24 H 4.18736 * 15.03777 * 0.02562 * 4 2 1 25 25 H 1.08999 * 109.46864 * 299.99750 * 5 3 2 26 26 H 1.08993 * 109.47378 * 60.00185 * 5 3 2 27 27 H 1.08998 * 109.47046 * 300.00042 * 6 5 3 28 28 H 1.09000 * 109.46855 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.47141 * 180.02562 * 7 6 5 30 30 H 1.08999 * 109.47433 * 59.99595 * 7 6 5 31 31 H 1.00899 * 111.00110 * 208.95534 * 10 8 7 32 32 H 1.08999 * 109.47223 * 305.29289 * 11 10 8 33 33 H 1.09003 * 109.47058 * 65.28590 * 11 10 8 34 34 H 0.96999 * 120.00486 * 180.02562 * 16 15 13 35 35 H 1.08996 * 117.49768 * 0.02562 * 21 12 11 36 36 H 1.09005 * 117.49978 * 145.02000 * 21 12 11 37 37 H 1.09000 * 117.50101 * 214.98173 * 22 12 11 38 38 H 1.09005 * 117.49306 * 359.97071 * 22 12 11 39 39 H 1.08999 * 109.47433 * 60.00062 * 23 3 2 40 40 H 1.09011 * 109.46797 * 300.00539 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.8075 -0.6367 5 6 3.1566 -1.3392 -0.5336 6 6 4.6867 -1.3382 -0.5342 7 6 5.1971 -1.1297 0.8931 8 6 4.6864 0.2102 1.4266 9 1 5.0489 1.0170 0.7896 10 7 5.1760 0.4102 2.7972 11 6 6.5230 0.9962 2.7948 12 6 7.0508 1.0672 4.2290 13 6 7.2763 -0.2607 4.9051 14 1 6.5043 -0.6873 5.5283 15 6 8.4682 -0.9308 4.7281 16 7 9.3586 -0.4746 3.8746 17 14 8.8182 -2.4868 5.7006 18 1 7.7839 -3.5067 5.3918 19 1 10.1567 -3.0120 5.3295 20 1 8.7919 -2.1792 7.1531 21 6 6.5752 2.2317 5.1000 22 6 8.0119 2.2070 4.5726 23 6 3.1559 0.2089 1.4274 24 1 -1.0500 -0.0004 0.0009 25 1 2.7937 -2.1460 0.1032 26 1 2.7935 -1.4876 -1.5505 27 1 5.0493 -0.5314 -1.1712 28 1 5.0505 -2.2929 -0.9139 29 1 6.2871 -1.1285 0.8926 30 1 4.8345 -1.9364 1.5301 31 1 4.5353 0.9785 3.3307 32 1 7.1878 0.3764 2.1932 33 1 6.4816 2.0004 2.3727 34 1 10.1970 -0.9462 3.7497 35 1 5.8859 2.9469 4.6514 36 1 6.4257 2.0375 6.1622 37 1 8.8071 1.9966 5.2878 38 1 8.2685 2.9061 3.7766 39 1 2.7929 -0.5979 2.0642 40 1 2.7920 1.1635 1.8076 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393757270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:29 Heat of formation + Delta-G solvation = 41.402534 kcal Electronic energy + Delta-G solvation = -17999.616584 eV Core-core repulsion = 15393.846496 eV Total energy + Delta-G solvation = -2605.770087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.10919 -38.49207 -35.62321 -33.95933 -33.74454 -31.10604 -30.02833 -27.57436 -25.84207 -24.01691 -23.02495 -22.57402 -20.98534 -20.60217 -18.85667 -18.00782 -16.77209 -16.39400 -16.11696 -15.73486 -15.50013 -15.18298 -14.91832 -14.81557 -14.05488 -13.62892 -13.47324 -13.26651 -13.06839 -12.83729 -12.65460 -12.48635 -12.36831 -12.15512 -12.01265 -11.66040 -11.60696 -11.36667 -11.28596 -10.92023 -10.82343 -10.71383 -10.33791 -9.88256 -9.02007 -8.01192 -6.06940 1.44399 1.44974 1.51832 1.91702 1.95577 2.49345 3.23031 3.28959 3.44030 3.64462 3.85533 4.02332 4.14757 4.29107 4.34602 4.46109 4.48818 4.52732 4.59229 4.60900 4.66671 4.74344 4.83590 4.95908 5.01324 5.07976 5.14685 5.19383 5.24733 5.28205 5.30130 5.34894 5.40619 5.54979 5.65867 5.78780 5.91167 6.41798 6.55492 6.75109 6.80530 6.95800 7.57837 9.07669 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.005592 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.056930 B = 5005.994372 C = 5508.262250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.210 4.210 3 C 0.025 3.975 4 H 0.097 0.903 5 C -0.102 4.102 6 C -0.110 4.110 7 C -0.105 4.105 8 C 0.093 3.907 9 H 0.037 0.963 10 N -0.677 5.677 11 C 0.126 3.874 12 C 0.025 3.975 13 C -0.479 4.479 14 H 0.046 0.954 15 C 0.024 3.976 16 N -0.911 5.911 17 Si 0.941 3.059 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.188 4.188 22 C -0.166 4.166 23 C -0.098 4.098 24 H 0.246 0.754 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.336 0.664 32 H 0.043 0.957 33 H 0.004 0.996 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.490 1.306 -9.259 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.210 4.210 3 C 0.007 3.993 4 H 0.115 0.885 5 C -0.139 4.139 6 C -0.148 4.148 7 C -0.144 4.144 8 C -0.016 4.016 9 H 0.054 0.946 10 N -0.308 5.308 11 C -0.003 4.003 12 C 0.024 3.976 13 C -0.517 4.517 14 H 0.064 0.936 15 C -0.175 4.175 16 N -0.550 5.550 17 Si 0.768 3.232 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.226 4.226 22 C -0.204 4.204 23 C -0.136 4.136 24 H 0.262 0.738 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.062 0.614 -9.257 16.021 hybrid contribution 0.458 0.095 0.466 0.660 sum -12.604 0.709 -8.792 15.384 Atomic orbital electron populations 1.25669 0.96736 0.99986 0.99713 1.23400 0.94874 1.01317 1.01430 1.18258 0.84359 0.99697 0.96993 0.88498 1.21501 0.95144 0.95620 1.01645 1.21504 0.95152 1.02625 0.95558 1.21485 0.99261 0.97150 0.96464 1.21483 0.94047 0.96743 0.89348 0.94550 1.60197 1.03084 1.54684 1.12839 1.21193 0.89337 0.93521 0.96288 1.18959 0.97827 0.88973 0.91829 1.20478 0.99510 1.03743 1.27936 0.93591 1.25536 0.96374 0.99688 0.95922 1.70096 1.08437 1.41016 1.35480 0.85882 0.76929 0.80887 0.79471 1.20189 1.21293 1.20018 1.22970 0.96675 1.03464 0.99446 1.22427 0.92205 1.03477 1.02334 1.21600 0.93607 1.02342 0.96073 0.73796 0.92067 0.90228 0.91193 0.90765 0.94470 0.92809 0.84519 0.93885 0.97842 0.93577 0.89327 0.90688 0.92499 0.91135 0.91688 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.85 19.25 74.32 1.43 -2.42 16 2 C -0.21 -4.73 12.56 31.13 0.39 -4.34 16 3 C 0.03 0.57 2.56 -12.60 -0.03 0.54 16 4 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 5 C -0.10 -2.15 5.16 30.60 0.16 -2.00 16 6 C -0.11 -2.61 5.92 30.60 0.18 -2.43 16 7 C -0.11 -3.38 5.42 30.59 0.17 -3.21 16 8 C 0.09 2.93 2.49 44.93 0.11 3.04 16 9 H 0.04 1.14 7.86 -2.39 -0.02 1.12 16 10 N -0.68 -26.07 6.18 -491.48 -3.04 -29.11 16 11 C 0.13 5.61 5.29 86.30 0.46 6.07 16 12 C 0.02 1.22 1.55 -52.93 -0.08 1.13 16 13 C -0.48 -26.43 8.74 25.60 0.22 -26.21 16 14 H 0.05 2.59 7.82 -2.91 -0.02 2.56 16 15 C 0.02 1.32 5.39 84.66 0.46 1.78 16 16 N -0.91 -52.81 12.90 21.45 0.28 -52.53 16 17 Si 0.94 44.68 29.54 68.60 2.03 46.71 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 21 C -0.19 -7.98 9.96 30.62 0.30 -7.68 16 22 C -0.17 -7.88 9.40 30.62 0.29 -7.59 16 23 C -0.10 -2.56 4.43 30.61 0.14 -2.42 16 24 H 0.25 2.60 7.80 -4.42 -0.03 2.56 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 1.40 7.38 -2.39 -0.02 1.39 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.34 11.96 8.40 -89.69 -0.75 11.21 16 32 H 0.04 2.20 7.33 -2.39 -0.02 2.18 16 33 H 0.00 0.15 8.09 -2.39 -0.02 0.13 16 34 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 35 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.07 3.18 8.14 -2.38 -0.02 3.16 16 37 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 1.66 8.12 -2.38 -0.02 1.64 16 Total: -1.00 -61.13 328.76 3.69 -57.44 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.23 Total: 23.21 kcal Atomic # 6 Polarization: -49.91 SS G_CDS: 4.19 Total: -45.72 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.76 Total: -81.64 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -61.13 3.69 -57.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393757270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.847 kcal (2) G-P(sol) polarization free energy of solvation -61.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds