Wall clock time and date at job start Mon Mar 30 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47241 * 285.10203 * 3 2 1 5 5 C 1.52998 * 109.47135 * 45.10945 * 3 2 1 6 6 C 1.53001 * 109.47039 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47204 * 299.99739 * 6 5 3 8 8 C 1.53002 * 109.47023 * 59.99664 * 7 6 5 9 9 H 1.09006 * 109.46935 * 59.99780 * 8 7 6 10 10 N 1.46897 * 109.47186 * 180.02562 * 8 7 6 11 11 C 1.46897 * 110.99855 * 275.00446 * 10 8 7 12 12 C 1.53003 * 109.47265 * 174.84191 * 11 10 8 13 13 C 1.50699 * 115.54746 * 304.83636 * 12 11 10 14 14 H 1.08004 * 120.00033 * 95.21677 * 13 12 11 15 15 C 1.37879 * 120.00286 * 275.22286 * 13 12 11 16 16 N 1.31514 * 119.99691 * 6.17667 * 15 13 12 17 17 Si 1.86802 * 119.99977 * 186.17639 * 15 13 12 18 18 H 1.48499 * 109.47148 * 59.99942 * 17 15 13 19 19 H 1.48506 * 109.46676 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46867 * 299.99451 * 17 15 13 21 21 C 1.52990 * 117.50193 * 90.50390 * 12 11 10 22 22 C 1.52993 * 117.50306 * 159.16709 * 12 11 10 23 23 C 1.52998 * 109.47575 * 300.00553 * 8 7 6 24 24 H 4.18743 * 15.03931 * 359.97438 * 4 2 1 25 25 H 1.08996 * 109.47663 * 59.99515 * 5 3 2 26 26 H 1.09000 * 109.46767 * 299.99061 * 5 3 2 27 27 H 1.09004 * 109.47189 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.46988 * 59.99461 * 6 5 3 29 29 H 1.08997 * 109.46891 * 300.00353 * 7 6 5 30 30 H 1.08997 * 109.47139 * 180.02562 * 7 6 5 31 31 H 1.00897 * 111.00171 * 151.05247 * 10 8 7 32 32 H 1.09000 * 109.47683 * 54.83672 * 11 10 8 33 33 H 1.09000 * 109.47369 * 294.83631 * 11 10 8 34 34 H 0.96998 * 119.99853 * 5.58723 * 16 15 13 35 35 H 1.09006 * 117.50479 * 215.00724 * 21 12 11 36 36 H 1.09005 * 117.50122 * 0.02760 * 21 12 11 37 37 H 1.09004 * 117.49710 * 359.97438 * 22 12 11 38 38 H 1.09002 * 117.50104 * 144.99273 * 22 12 11 39 39 H 1.08991 * 109.47420 * 179.97438 * 23 8 7 40 40 H 1.09006 * 109.46626 * 300.00058 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.2669 0.9921 5 6 3.1565 -1.0171 -1.0219 6 6 4.6865 -1.0160 -1.0224 7 6 5.1954 0.3784 -1.3935 8 6 4.6848 1.3963 -0.3716 9 1 5.0486 1.1288 0.6205 10 7 5.1728 2.7351 -0.7282 11 6 6.5202 2.9649 -0.1900 12 6 7.0452 4.3131 -0.6877 13 6 7.0491 4.4971 -2.1834 14 1 6.2208 4.9917 -2.6689 15 6 8.1101 4.0337 -2.9322 16 7 9.0591 3.3256 -2.3600 17 14 8.1994 4.4118 -4.7594 18 1 8.2345 5.8828 -4.9594 19 1 9.4288 3.8055 -5.3307 20 1 7.0063 3.8478 -5.4404 21 6 6.7598 5.5443 0.1746 22 6 8.1763 4.9680 0.1075 23 6 3.1548 1.3951 -0.3711 24 1 -1.0500 0.0004 0.0005 25 1 2.7930 -0.7496 -2.0141 26 1 2.7937 -2.0105 -0.7577 27 1 5.0502 -1.7414 -1.7501 28 1 5.0503 -1.2834 -0.0302 29 1 4.8315 0.6458 -2.3855 30 1 6.2853 0.3791 -1.3942 31 1 4.5320 3.4489 -0.4153 32 1 7.1860 2.1696 -0.5253 33 1 6.4804 2.9703 0.8992 34 1 8.9731 3.0603 -1.4310 35 1 6.5749 6.4873 -0.3398 36 1 6.1985 5.3937 1.0968 37 1 8.5463 4.4385 0.9856 38 1 8.9234 5.5318 -0.4511 39 1 2.7911 2.1199 0.3572 40 1 2.7910 1.6625 -1.3632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393757272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:31 Heat of formation + Delta-G solvation = 52.487666 kcal Electronic energy + Delta-G solvation = -18082.706130 eV Core-core repulsion = 15477.416730 eV Total energy + Delta-G solvation = -2605.289400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.97811 -37.01573 -34.40803 -32.80781 -31.71258 -30.09445 -28.83195 -25.07393 -24.27485 -22.95106 -21.72042 -21.12803 -19.67853 -19.13963 -18.01788 -16.53749 -15.41187 -14.92718 -14.53646 -14.43357 -14.09610 -13.63069 -13.45942 -13.24318 -12.73263 -12.41454 -12.21441 -12.02033 -11.61075 -11.42591 -11.01529 -10.82997 -10.69555 -10.59326 -10.51631 -10.39210 -10.21436 -10.01826 -9.99120 -9.88156 -9.37737 -8.40998 -8.37676 -8.15519 -7.53485 -6.17111 -3.87056 2.77174 2.79520 3.52474 3.54439 3.72172 4.22003 4.57551 4.65604 4.85090 5.03688 5.11447 5.29638 5.33876 5.45405 5.49028 5.54756 5.55702 5.64716 5.74444 5.92873 6.03567 6.04251 6.14387 6.17745 6.23357 6.30832 6.32575 6.38045 6.46622 6.57627 6.62089 6.73744 6.79243 6.93681 7.31977 7.36642 7.57110 7.93179 8.14228 8.45894 8.60335 9.04608 9.83523 11.21301 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.005760 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.541621 B = 4859.642287 C = 5315.374378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.170 4.170 3 C 0.021 3.979 4 H 0.088 0.912 5 C -0.108 4.108 6 C -0.118 4.118 7 C -0.108 4.108 8 C 0.091 3.909 9 H 0.032 0.968 10 N -0.658 5.658 11 C 0.104 3.896 12 C 0.029 3.971 13 C -0.540 4.540 14 H 0.050 0.950 15 C 0.025 3.975 16 N -0.913 5.913 17 Si 1.063 2.937 18 H -0.291 1.291 19 H -0.286 1.286 20 H -0.289 1.289 21 C -0.202 4.202 22 C -0.180 4.180 23 C -0.109 4.109 24 H 0.215 0.785 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.332 0.668 32 H 0.067 0.933 33 H -0.006 1.006 34 H 0.271 0.729 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.482 -7.274 5.014 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.170 4.170 3 C 0.003 3.997 4 H 0.106 0.894 5 C -0.145 4.145 6 C -0.156 4.156 7 C -0.146 4.146 8 C -0.019 4.019 9 H 0.050 0.950 10 N -0.288 5.288 11 C -0.025 4.025 12 C 0.028 3.972 13 C -0.578 4.578 14 H 0.068 0.932 15 C -0.179 4.179 16 N -0.549 5.549 17 Si 0.892 3.108 18 H -0.218 1.218 19 H -0.211 1.211 20 H -0.215 1.215 21 C -0.239 4.239 22 C -0.218 4.218 23 C -0.147 4.147 24 H 0.232 0.768 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.012 0.988 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.270 -7.635 3.034 13.152 hybrid contribution -1.411 0.352 2.451 2.850 sum -11.681 -7.283 5.485 14.818 Atomic orbital electron populations 1.24837 0.95853 1.01432 1.01768 1.23197 0.94353 0.99778 0.99681 1.18345 0.83985 0.96915 1.00468 0.89355 1.21549 0.96210 0.97798 0.98956 1.21565 0.94379 0.98093 1.01602 1.21530 1.01147 0.92206 0.99695 1.21447 0.92572 0.91513 0.96373 0.94992 1.60205 1.03542 1.01145 1.63913 1.21620 0.89452 0.99360 0.92086 1.19150 0.96277 0.87664 0.94132 1.21069 1.07381 1.40590 0.88729 0.93180 1.25614 0.92716 0.94122 1.05415 1.70729 1.34239 1.34679 1.15253 0.83644 0.75874 0.75923 0.75359 1.21813 1.21117 1.21547 1.22894 0.99547 1.00347 1.01121 1.22740 0.91624 1.05753 1.01712 1.21714 0.95624 0.94653 1.02683 0.76815 0.91394 0.92018 0.91595 0.92234 0.91057 0.91493 0.85075 0.91495 0.98752 0.91855 0.90290 0.92043 0.91934 0.89785 0.92088 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.44 19.25 29.55 0.57 -1.87 16 2 C -0.17 -2.12 12.56 -37.12 -0.47 -2.59 16 3 C 0.02 0.26 2.57 -93.40 -0.24 0.02 16 4 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 5 C -0.11 -1.25 5.16 -26.73 -0.14 -1.39 16 6 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 7 C -0.11 -1.72 5.42 -26.73 -0.14 -1.86 16 8 C 0.09 1.45 2.49 -67.71 -0.17 1.28 16 9 H 0.03 0.51 7.86 -51.93 -0.41 0.10 16 10 N -0.66 -12.84 5.98 -106.73 -0.64 -13.47 16 11 C 0.10 2.27 5.27 -3.82 -0.02 2.25 16 12 C 0.03 0.69 1.15 -155.67 -0.18 0.51 16 13 C -0.54 -14.83 8.53 -34.44 -0.29 -15.12 16 14 H 0.05 1.42 7.82 -52.48 -0.41 1.01 16 15 C 0.03 0.71 5.39 -17.82 -0.10 0.62 16 16 N -0.91 -26.92 13.46 55.43 0.75 -26.18 16 17 Si 1.06 25.41 29.91 -169.99 -5.08 20.33 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.20 -4.40 9.93 -26.70 -0.27 -4.67 16 22 C -0.18 -4.20 8.92 -26.70 -0.24 -4.44 16 23 C -0.11 -1.50 4.43 -26.73 -0.12 -1.61 16 24 H 0.21 1.57 7.80 -54.09 -0.42 1.15 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.22 7.39 -51.93 -0.38 0.84 16 31 H 0.33 6.17 8.40 -39.29 -0.33 5.84 16 32 H 0.07 1.60 6.68 -51.93 -0.35 1.25 16 33 H -0.01 -0.11 8.09 -51.93 -0.42 -0.53 16 34 H 0.27 7.91 6.13 -40.82 -0.25 7.66 16 35 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 39 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -29.41 325.51 -8.87 -38.27 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.84 Total: 6.64 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: -1.96 Total: -30.50 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.11 Total: -39.65 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.41 -8.87 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393757272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.761 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds