Wall clock time and date at job start Mon Mar 30 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47241 * 285.10203 * 3 2 1 5 5 C 1.52998 * 109.47135 * 45.10945 * 3 2 1 6 6 C 1.53001 * 109.47039 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47204 * 299.99739 * 6 5 3 8 8 C 1.53002 * 109.47023 * 59.99664 * 7 6 5 9 9 H 1.09006 * 109.46935 * 59.99780 * 8 7 6 10 10 N 1.46897 * 109.47186 * 180.02562 * 8 7 6 11 11 C 1.46897 * 110.99855 * 275.00446 * 10 8 7 12 12 C 1.53003 * 109.47265 * 174.84191 * 11 10 8 13 13 C 1.50699 * 115.54746 * 304.83636 * 12 11 10 14 14 H 1.08004 * 120.00033 * 95.21677 * 13 12 11 15 15 C 1.37879 * 120.00286 * 275.22286 * 13 12 11 16 16 N 1.31514 * 119.99691 * 6.17667 * 15 13 12 17 17 Si 1.86802 * 119.99977 * 186.17639 * 15 13 12 18 18 H 1.48499 * 109.47148 * 59.99942 * 17 15 13 19 19 H 1.48506 * 109.46676 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46867 * 299.99451 * 17 15 13 21 21 C 1.52990 * 117.50193 * 90.50390 * 12 11 10 22 22 C 1.52993 * 117.50306 * 159.16709 * 12 11 10 23 23 C 1.52998 * 109.47575 * 300.00553 * 8 7 6 24 24 H 4.18743 * 15.03931 * 359.97438 * 4 2 1 25 25 H 1.08996 * 109.47663 * 59.99515 * 5 3 2 26 26 H 1.09000 * 109.46767 * 299.99061 * 5 3 2 27 27 H 1.09004 * 109.47189 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.46988 * 59.99461 * 6 5 3 29 29 H 1.08997 * 109.46891 * 300.00353 * 7 6 5 30 30 H 1.08997 * 109.47139 * 180.02562 * 7 6 5 31 31 H 1.00897 * 111.00171 * 151.05247 * 10 8 7 32 32 H 1.09000 * 109.47683 * 54.83672 * 11 10 8 33 33 H 1.09000 * 109.47369 * 294.83631 * 11 10 8 34 34 H 0.96998 * 119.99853 * 5.58723 * 16 15 13 35 35 H 1.09006 * 117.50479 * 215.00724 * 21 12 11 36 36 H 1.09005 * 117.50122 * 0.02760 * 21 12 11 37 37 H 1.09004 * 117.49710 * 359.97438 * 22 12 11 38 38 H 1.09002 * 117.50104 * 144.99273 * 22 12 11 39 39 H 1.08991 * 109.47420 * 179.97438 * 23 8 7 40 40 H 1.09006 * 109.46626 * 300.00058 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.2669 0.9921 5 6 3.1565 -1.0171 -1.0219 6 6 4.6865 -1.0160 -1.0224 7 6 5.1954 0.3784 -1.3935 8 6 4.6848 1.3963 -0.3716 9 1 5.0486 1.1288 0.6205 10 7 5.1728 2.7351 -0.7282 11 6 6.5202 2.9649 -0.1900 12 6 7.0452 4.3131 -0.6877 13 6 7.0491 4.4971 -2.1834 14 1 6.2208 4.9917 -2.6689 15 6 8.1101 4.0337 -2.9322 16 7 9.0591 3.3256 -2.3600 17 14 8.1994 4.4118 -4.7594 18 1 8.2345 5.8828 -4.9594 19 1 9.4288 3.8055 -5.3307 20 1 7.0063 3.8478 -5.4404 21 6 6.7598 5.5443 0.1746 22 6 8.1763 4.9680 0.1075 23 6 3.1548 1.3951 -0.3711 24 1 -1.0500 0.0004 0.0005 25 1 2.7930 -0.7496 -2.0141 26 1 2.7937 -2.0105 -0.7577 27 1 5.0502 -1.7414 -1.7501 28 1 5.0503 -1.2834 -0.0302 29 1 4.8315 0.6458 -2.3855 30 1 6.2853 0.3791 -1.3942 31 1 4.5320 3.4489 -0.4153 32 1 7.1860 2.1696 -0.5253 33 1 6.4804 2.9703 0.8992 34 1 8.9731 3.0603 -1.4310 35 1 6.5749 6.4873 -0.3398 36 1 6.1985 5.3937 1.0968 37 1 8.5463 4.4385 0.9856 38 1 8.9234 5.5318 -0.4511 39 1 2.7911 2.1199 0.3572 40 1 2.7910 1.6625 -1.3632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393757272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:31 Heat of formation + Delta-G solvation = 36.812167 kcal Electronic energy + Delta-G solvation = -18083.385870 eV Core-core repulsion = 15477.416730 eV Total energy + Delta-G solvation = -2605.969141 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19188 -38.76113 -35.73277 -33.95007 -33.76882 -31.15867 -30.11331 -27.04623 -25.99730 -24.07806 -23.14392 -22.68130 -21.24788 -20.72610 -18.89250 -18.49527 -16.73277 -16.32512 -15.92512 -15.60131 -15.54776 -15.25429 -15.00793 -14.83244 -14.41323 -13.88059 -13.46427 -13.34579 -13.29691 -12.65838 -12.59554 -12.54680 -12.24852 -12.17831 -11.93131 -11.69258 -11.64284 -11.40927 -11.30631 -10.94599 -10.85673 -10.42838 -10.38067 -10.12128 -9.08452 -8.39070 -6.08423 1.56470 1.63825 1.81795 1.88864 1.92949 2.65308 3.10454 3.35447 3.37734 3.47257 3.79904 3.96607 4.08986 4.19251 4.25483 4.36774 4.38863 4.42214 4.49125 4.53686 4.57867 4.61729 4.62748 4.82360 4.85569 4.99405 5.08379 5.10183 5.11158 5.20803 5.24038 5.29196 5.34513 5.44639 5.49089 5.59122 6.25324 6.36414 6.43622 6.69674 6.72509 6.86924 7.67735 9.00295 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.005760 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.541621 B = 4859.642287 C = 5315.374378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.211 4.211 3 C 0.026 3.974 4 H 0.098 0.902 5 C -0.102 4.102 6 C -0.110 4.110 7 C -0.105 4.105 8 C 0.093 3.907 9 H 0.039 0.961 10 N -0.674 5.674 11 C 0.120 3.880 12 C -0.001 4.001 13 C -0.544 4.544 14 H 0.035 0.965 15 C -0.021 4.021 16 N -0.938 5.938 17 Si 1.103 2.897 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.279 1.279 21 C -0.176 4.176 22 C -0.184 4.184 23 C -0.098 4.098 24 H 0.246 0.754 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.035 0.965 31 H 0.337 0.663 32 H 0.037 0.963 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.491 -7.790 5.813 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.211 4.211 3 C 0.008 3.992 4 H 0.116 0.884 5 C -0.139 4.139 6 C -0.148 4.148 7 C -0.143 4.143 8 C -0.016 4.016 9 H 0.056 0.944 10 N -0.305 5.305 11 C -0.010 4.010 12 C -0.001 4.001 13 C -0.582 4.582 14 H 0.054 0.946 15 C -0.220 4.220 16 N -0.576 5.576 17 Si 0.927 3.073 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.205 1.205 21 C -0.213 4.213 22 C -0.222 4.222 23 C -0.136 4.136 24 H 0.263 0.737 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.155 0.845 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.299 -8.143 3.846 15.243 hybrid contribution -0.852 0.542 2.222 2.440 sum -13.151 -7.601 6.067 16.356 Atomic orbital electron populations 1.25681 0.96743 0.99483 1.00051 1.23387 0.94868 1.01561 1.01329 1.18249 0.84409 0.95579 1.00976 0.88384 1.21504 0.95106 0.98766 0.98562 1.21501 0.95198 0.95645 1.02428 1.21483 0.99104 0.94811 0.98939 1.21487 0.94199 0.89540 0.96381 0.94352 1.60123 1.02818 1.03028 1.64511 1.21281 0.90064 0.96830 0.92791 1.19263 0.97919 0.89885 0.93082 1.21288 1.06570 1.39566 0.90778 0.94643 1.26757 0.92676 0.93819 1.08716 1.70826 1.35267 1.36478 1.15003 0.83105 0.75977 0.76576 0.71609 1.20277 1.21418 1.20464 1.22894 0.98214 0.98833 1.01402 1.22652 0.91726 1.05925 1.01886 1.21584 0.93543 0.96324 1.02168 0.73747 0.92153 0.90071 0.90724 0.91046 0.93018 0.94655 0.84478 0.94417 0.97063 0.92833 0.90619 0.88982 0.90281 0.92329 0.91471 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.84 19.25 74.32 1.43 -2.41 16 2 C -0.21 -4.78 12.56 31.13 0.39 -4.39 16 3 C 0.03 0.59 2.57 -12.60 -0.03 0.56 16 4 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 5 C -0.10 -2.18 5.16 30.59 0.16 -2.02 16 6 C -0.11 -2.61 5.92 30.60 0.18 -2.43 16 7 C -0.10 -3.42 5.42 30.60 0.17 -3.25 16 8 C 0.09 2.95 2.49 44.92 0.11 3.06 16 9 H 0.04 1.18 7.86 -2.38 -0.02 1.16 16 10 N -0.67 -26.29 5.98 -491.57 -2.94 -29.22 16 11 C 0.12 5.24 5.27 86.30 0.45 5.70 16 12 C 0.00 -0.04 1.15 -52.93 -0.06 -0.10 16 13 C -0.54 -30.30 8.53 25.60 0.22 -30.08 16 14 H 0.04 2.03 7.82 -2.91 -0.02 2.01 16 15 C -0.02 -1.20 5.39 84.66 0.46 -0.74 16 16 N -0.94 -56.66 13.46 21.45 0.29 -56.38 16 17 Si 1.10 51.79 29.91 68.60 2.05 53.85 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 C -0.18 -7.44 9.93 30.61 0.30 -7.13 16 22 C -0.18 -8.54 8.92 30.61 0.27 -8.27 16 23 C -0.10 -2.59 4.43 30.60 0.14 -2.46 16 24 H 0.25 2.62 7.80 -4.42 -0.03 2.59 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.07 1.54 8.14 -2.38 -0.02 1.53 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.03 1.34 7.39 -2.39 -0.02 1.33 16 31 H 0.34 12.30 8.40 -89.70 -0.75 11.54 16 32 H 0.04 1.85 6.68 -2.39 -0.02 1.84 16 33 H 0.01 0.46 8.09 -2.39 -0.02 0.44 16 34 H 0.26 15.80 6.13 -92.71 -0.57 15.23 16 35 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 36 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 37 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 38 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 40 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -63.80 325.51 4.03 -59.78 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.44 Total: 25.94 kcal Atomic # 6 Polarization: -58.16 SS G_CDS: 4.19 Total: -53.97 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.65 Total: -85.60 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.85 kcal Total: -63.80 4.03 -59.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393757272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.591 kcal (2) G-P(sol) polarization free energy of solvation -63.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds