Wall clock time and date at job start Mon Mar 30 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09000 * 109.46961 * 264.14805 * 3 2 1 5 5 C 1.53000 * 109.47471 * 24.14718 * 3 2 1 6 6 C 1.53005 * 109.46669 * 60.00198 * 5 3 2 7 7 C 1.52995 * 109.47095 * 59.99890 * 6 5 3 8 8 C 1.53000 * 109.47452 * 299.99630 * 7 6 5 9 9 H 1.08994 * 109.47141 * 300.00807 * 8 7 6 10 10 N 1.46898 * 109.47121 * 179.97438 * 8 7 6 11 11 C 1.46897 * 110.99987 * 85.00441 * 10 8 7 12 12 C 1.52992 * 109.47330 * 183.97242 * 11 10 8 13 13 C 1.50702 * 115.54863 * 301.95874 * 12 11 10 14 14 H 1.07999 * 120.00227 * 99.55561 * 13 12 11 15 15 C 1.37870 * 119.99799 * 279.54968 * 13 12 11 16 16 N 1.31512 * 120.00382 * 357.03477 * 15 13 12 17 17 Si 1.86804 * 119.99959 * 177.03530 * 15 13 12 18 18 H 1.48496 * 109.47250 * 89.99975 * 17 15 13 19 19 H 1.48507 * 109.47054 * 329.99991 * 17 15 13 20 20 H 1.48501 * 109.47230 * 210.00248 * 17 15 13 21 21 C 1.53000 * 117.51947 * 87.65973 * 12 11 10 22 22 C 1.52995 * 60.00223 * 107.48158 * 21 12 11 23 23 C 1.52995 * 109.47033 * 144.15281 * 3 2 1 24 24 H 4.18742 * 15.03927 * 359.97438 * 4 2 1 25 25 H 1.08994 * 109.47486 * 179.97438 * 5 3 2 26 26 H 1.09002 * 109.47035 * 300.00507 * 5 3 2 27 27 H 1.08998 * 109.46902 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.47113 * 299.99422 * 6 5 3 29 29 H 1.09000 * 109.46858 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.47007 * 59.99890 * 7 6 5 31 31 H 1.00901 * 110.99981 * 321.04973 * 10 8 7 32 32 H 1.08998 * 109.47009 * 63.96690 * 11 10 8 33 33 H 1.09007 * 109.47061 * 303.97121 * 11 10 8 34 34 H 0.97002 * 119.99963 * 5.87126 * 16 15 13 35 35 H 1.09005 * 117.50028 * 214.97602 * 21 12 11 36 36 H 1.09002 * 117.49889 * 359.97438 * 21 12 11 37 37 H 1.08991 * 117.50001 * 252.50948 * 22 21 12 38 38 H 1.09006 * 117.49879 * 107.48548 * 22 21 12 39 39 H 1.09001 * 109.47007 * 179.97438 * 23 3 2 40 40 H 1.08998 * 109.47617 * 59.99812 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.1056 1.0223 5 6 3.1566 -1.3154 -0.5901 6 6 2.6467 -1.4626 -2.0251 7 6 3.1562 -0.2931 -2.8699 8 6 2.6455 1.0229 -2.2798 9 1 1.5555 1.0223 -2.2797 10 7 3.1352 2.1457 -3.0906 11 6 2.2519 2.3908 -4.2384 12 6 2.8452 3.4984 -5.1112 13 6 3.0791 4.8164 -4.4188 14 1 4.0682 5.0757 -4.0712 15 6 2.0305 5.6912 -4.2293 16 7 0.8387 5.4018 -4.7040 17 14 2.3026 7.2876 -3.2983 18 1 2.6960 8.3559 -4.2518 19 1 3.3809 7.0980 -2.2949 20 1 1.0471 7.6781 -2.6078 21 6 3.8390 3.0856 -6.1988 22 6 2.4288 3.5377 -6.5830 23 6 3.1554 1.1701 -0.8447 24 1 -1.0501 0.0005 -0.0002 25 1 4.2466 -1.3147 -0.5905 26 1 2.7936 -2.1485 0.0118 27 1 3.0101 -2.4003 -2.4454 28 1 1.5567 -1.4632 -2.0251 29 1 2.7932 -0.3983 -3.8923 30 1 4.2462 -0.2926 -2.8698 31 1 4.0847 1.9867 -3.3924 32 1 1.2686 2.6969 -3.8814 33 1 2.1571 1.4772 -4.8255 34 1 0.6761 4.5370 -5.1122 35 1 4.6621 3.7672 -6.4135 36 1 4.0706 2.0246 -6.2924 37 1 1.7324 2.7742 -6.9295 38 1 2.3240 4.5169 -7.0504 39 1 4.2454 1.1709 -0.8444 40 1 2.7917 2.1077 -0.4243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393757273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:34 Heat of formation + Delta-G solvation = 53.229397 kcal Electronic energy + Delta-G solvation = -18273.482481 eV Core-core repulsion = 15668.225245 eV Total energy + Delta-G solvation = -2605.257236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.18449 -37.05464 -34.27353 -32.36660 -31.72143 -30.24746 -28.87287 -25.06040 -24.18123 -22.95848 -21.63249 -21.13859 -20.40876 -19.24431 -17.30991 -16.54443 -15.75255 -14.83332 -14.41247 -14.33747 -14.03602 -13.63990 -13.42036 -13.25314 -12.63887 -12.37637 -12.33116 -12.03314 -11.70248 -11.46559 -11.00630 -10.85810 -10.73020 -10.66732 -10.53833 -10.39083 -10.31206 -10.02257 -9.90901 -9.76757 -9.32260 -8.52603 -8.39581 -8.08452 -7.49458 -6.18108 -3.89295 2.97583 2.99823 3.50769 3.56571 3.71341 4.38032 4.60742 4.67501 4.85483 4.87948 5.09302 5.26356 5.28289 5.44204 5.50030 5.59169 5.64390 5.65953 5.77000 5.82908 6.01302 6.03965 6.11430 6.14580 6.21108 6.22789 6.29220 6.37990 6.41972 6.54204 6.59531 6.61747 6.77423 6.93330 7.30728 7.36307 7.77339 7.94279 8.18087 8.43928 8.57902 9.03644 9.82734 11.21062 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.006484 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.577460 B = 4317.432264 C = 4958.138333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.167 4.167 3 C 0.019 3.981 4 H 0.090 0.910 5 C -0.108 4.108 6 C -0.115 4.115 7 C -0.149 4.149 8 C 0.088 3.912 9 H 0.072 0.928 10 N -0.659 5.659 11 C 0.106 3.894 12 C 0.027 3.973 13 C -0.544 4.544 14 H 0.050 0.950 15 C 0.025 3.975 16 N -0.915 5.915 17 Si 1.069 2.931 18 H -0.292 1.292 19 H -0.288 1.288 20 H -0.287 1.287 21 C -0.201 4.201 22 C -0.182 4.182 23 C -0.097 4.097 24 H 0.213 0.787 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.333 0.667 32 H 0.064 0.936 33 H -0.004 1.004 34 H 0.272 0.728 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 -12.868 7.072 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.167 4.167 3 C 0.000 4.000 4 H 0.108 0.892 5 C -0.146 4.146 6 C -0.153 4.153 7 C -0.188 4.188 8 C -0.023 4.023 9 H 0.091 0.909 10 N -0.287 5.287 11 C -0.023 4.023 12 C 0.026 3.974 13 C -0.582 4.582 14 H 0.069 0.931 15 C -0.179 4.179 16 N -0.551 5.551 17 Si 0.898 3.102 18 H -0.219 1.219 19 H -0.215 1.215 20 H -0.213 1.213 21 C -0.238 4.238 22 C -0.221 4.221 23 C -0.135 4.135 24 H 0.230 0.770 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.014 0.986 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.371 -10.946 7.931 13.724 hybrid contribution 0.685 -2.266 -1.187 2.648 sum 3.056 -13.212 6.743 15.145 Atomic orbital electron populations 1.24830 0.95892 1.01206 1.01824 1.22969 0.94234 0.99917 0.99532 1.18428 0.84837 0.96479 1.00246 0.89226 1.21545 1.00664 0.96034 0.96343 1.21481 1.01007 0.97918 0.94926 1.22319 1.00792 0.96384 0.99313 1.21561 0.99596 0.87966 0.93141 0.90939 1.60329 1.05311 1.39417 1.23611 1.21557 0.96505 0.94243 0.90038 1.19184 0.96534 0.95580 0.86102 1.21127 0.96776 1.00387 1.39897 0.93134 1.25650 0.93064 1.03092 0.96130 1.70695 1.22980 1.24616 1.36790 0.83559 0.75392 0.75049 0.76207 1.21882 1.21459 1.21297 1.22846 0.93416 0.98112 1.09426 1.22772 0.95994 1.00618 1.02691 1.21516 1.00567 0.96958 0.94490 0.76988 0.91050 0.91980 0.92379 0.91964 0.92386 0.91975 0.84942 0.91715 0.98601 0.91684 0.90289 0.91995 0.91912 0.89780 0.91166 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.92 19.25 29.55 0.57 -2.35 16 2 C -0.17 -2.31 10.06 -37.12 -0.37 -2.68 16 3 C 0.02 0.23 3.07 -93.41 -0.29 -0.06 16 4 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.11 -1.15 5.43 -26.73 -0.15 -1.29 16 6 C -0.12 -1.36 5.70 -26.73 -0.15 -1.52 16 7 C -0.15 -2.05 5.17 -26.73 -0.14 -2.19 16 8 C 0.09 1.44 2.24 -67.71 -0.15 1.29 16 9 H 0.07 1.34 6.93 -51.93 -0.36 0.98 16 10 N -0.66 -13.07 6.04 -106.73 -0.64 -13.71 16 11 C 0.11 2.37 5.28 -3.83 -0.02 2.35 16 12 C 0.03 0.66 1.07 -155.66 -0.17 0.49 16 13 C -0.54 -15.14 8.58 -34.44 -0.30 -15.43 16 14 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 15 C 0.02 0.71 5.44 -17.82 -0.10 0.61 16 16 N -0.91 -27.49 13.54 55.43 0.75 -26.74 16 17 Si 1.07 25.81 29.90 -169.99 -5.08 20.73 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.20 -4.39 9.94 -26.73 -0.27 -4.66 16 22 C -0.18 -4.30 8.73 -26.73 -0.23 -4.53 16 23 C -0.10 -1.40 5.03 -26.73 -0.13 -1.53 16 24 H 0.21 2.15 7.80 -54.09 -0.42 1.73 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.81 7.23 -51.93 -0.38 0.43 16 29 H 0.06 0.86 7.40 -51.93 -0.38 0.48 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.33 6.32 8.42 -39.29 -0.33 5.99 16 32 H 0.06 1.63 7.78 -51.93 -0.40 1.23 16 33 H 0.00 -0.08 7.32 -51.92 -0.38 -0.46 16 34 H 0.27 8.11 6.14 -40.82 -0.25 7.86 16 35 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 2.13 8.14 -51.93 -0.42 1.70 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 322.17 15.07 4.85 4.85 Total: -1.00 -30.06 322.17 -8.78 -38.84 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.76 Total: 7.54 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: -1.89 Total: -31.50 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.11 Total: -40.45 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.06 -8.78 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393757273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.069 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds