Wall clock time and date at job start Mon Mar 30 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47123 * 2 1 4 4 C 1.50701 * 109.46918 * 180.02562 * 3 2 1 5 5 C 1.38226 * 120.00261 * 269.72851 * 4 3 2 6 6 C 1.38234 * 120.00372 * 179.77248 * 5 4 3 7 7 C 1.38239 * 119.99520 * 0.50411 * 6 5 4 8 8 C 1.50699 * 119.99973 * 179.73188 * 7 6 5 9 9 H 1.09001 * 109.47217 * 193.73948 * 8 7 6 10 10 C 1.50700 * 109.47487 * 73.73650 * 8 7 6 11 11 H 1.08003 * 119.99791 * 300.77633 * 10 8 7 12 12 C 1.37875 * 119.99872 * 120.77933 * 10 8 7 13 13 N 1.31515 * 119.99709 * 174.86963 * 12 10 8 14 14 Si 1.86797 * 120.00110 * 354.87423 * 12 10 8 15 15 H 1.48502 * 109.47399 * 84.75287 * 14 12 10 16 16 H 1.48504 * 109.47228 * 204.75050 * 14 12 10 17 17 H 1.48499 * 109.46993 * 324.74744 * 14 12 10 18 18 N 1.46901 * 109.46926 * 313.73796 * 8 7 6 19 19 C 1.46903 * 111.00127 * 204.29122 * 18 8 7 20 20 C 1.53005 * 109.47122 * 179.97438 * 19 18 8 21 21 C 1.38233 * 119.99864 * 359.74651 * 7 6 5 22 22 C 1.38227 * 120.00336 * 0.02562 * 21 7 6 23 23 H 1.09005 * 109.46912 * 299.99550 * 1 2 3 24 24 H 1.09000 * 109.47615 * 59.99265 * 1 2 3 25 25 H 1.08998 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46912 * 240.00449 * 2 1 3 27 27 H 1.09000 * 109.47615 * 120.00735 * 2 1 3 28 28 H 1.09000 * 109.46820 * 300.00449 * 3 2 1 29 29 H 1.08996 * 109.46859 * 60.00669 * 3 2 1 30 30 H 1.08009 * 120.00232 * 359.97438 * 5 4 3 31 31 H 1.07998 * 120.00666 * 180.23014 * 6 5 4 32 32 H 0.97003 * 119.99428 * 180.02562 * 13 12 10 33 33 H 1.00895 * 111.00193 * 80.33644 * 18 8 7 34 34 H 1.09002 * 109.47080 * 299.99943 * 19 18 8 35 35 H 1.09000 * 109.46968 * 59.99721 * 19 18 8 36 36 H 1.08993 * 109.47024 * 299.99695 * 20 19 18 37 37 H 1.09001 * 109.46906 * 59.99786 * 20 19 18 38 38 H 1.09004 * 109.46668 * 180.02562 * 20 19 18 39 39 H 1.08006 * 119.99566 * 179.97438 * 21 7 6 40 40 H 1.08002 * 120.00360 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2387 1.4480 1.1961 6 6 5.6210 1.4432 1.1956 7 6 6.3116 1.4434 -0.0019 8 6 7.8186 1.4443 -0.0026 9 1 8.1814 1.6885 -1.0011 10 6 8.3220 0.0807 0.3952 11 1 8.0515 -0.3362 1.3541 12 6 9.1279 -0.6345 -0.4649 13 7 9.6495 -1.7785 -0.0789 14 14 9.4791 0.0212 -2.1784 15 1 10.6183 0.9721 -2.1207 16 1 9.8220 -1.1079 -3.0799 17 1 8.2761 0.7207 -2.6968 18 7 8.3081 2.4454 0.9546 19 6 9.6617 2.8938 0.6014 20 6 10.1360 3.9339 1.6184 21 6 5.6199 1.4432 -1.1987 22 6 4.2376 1.4433 -1.1981 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6765 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.6991 1.4527 2.1317 31 1 6.1615 1.4437 2.1306 32 1 10.2168 -2.2815 -0.6840 33 1 8.2802 2.0879 1.8977 34 1 10.3406 2.0411 0.6097 35 1 9.6491 3.3385 -0.3937 36 1 9.4570 4.7865 1.6097 37 1 10.1485 3.4895 2.6136 38 1 11.1402 4.2669 1.3560 39 1 6.1595 1.4438 -2.1343 40 1 3.6972 1.4435 -2.1332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393762302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:59 Heat of formation + Delta-G solvation = -19.775891 kcal Electronic energy + Delta-G solvation = -17785.383668 eV Core-core repulsion = 15176.960685 eV Total energy + Delta-G solvation = -2608.422983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36994 -37.84259 -35.73125 -34.60590 -32.87061 -31.66213 -30.60050 -28.15884 -26.93312 -23.93540 -23.67761 -22.62676 -22.11890 -21.04568 -19.26530 -17.18852 -16.83834 -16.50886 -16.01489 -15.81717 -15.41342 -14.94717 -14.76866 -14.63662 -14.34231 -14.10058 -13.86210 -13.63629 -13.12935 -13.07345 -12.80272 -12.76786 -12.49283 -12.25825 -12.06150 -12.00864 -11.91531 -11.76178 -11.52129 -11.44648 -11.26407 -10.81534 -9.63905 -9.30967 -8.97097 -8.40383 -6.44946 0.67265 0.71012 1.23811 1.26312 1.34917 2.22644 2.90066 3.12411 3.63993 3.98661 4.02724 4.21461 4.27871 4.30298 4.34843 4.48019 4.54140 4.56897 4.64166 4.71519 4.79293 4.85679 4.94947 4.96416 5.07722 5.08076 5.18920 5.22425 5.28025 5.31843 5.38997 5.44023 5.45938 5.51942 5.75473 5.86597 5.97604 6.05278 6.31696 6.41653 6.61376 6.75140 7.22636 8.75931 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.006230 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.372438 B = 4493.282031 C = 5160.193842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.067 4.067 4 C -0.106 4.106 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.052 4.052 8 C 0.210 3.790 9 H 0.042 0.958 10 C -0.529 4.529 11 H 0.036 0.964 12 C 0.025 3.975 13 N -0.938 5.938 14 Si 0.927 3.073 15 H -0.262 1.262 16 H -0.284 1.284 17 H -0.248 1.248 18 N -0.677 5.677 19 C 0.052 3.948 20 C -0.134 4.134 21 C -0.149 4.149 22 C -0.119 4.119 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.267 0.733 33 H 0.332 0.668 34 H 0.006 0.994 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.502 8.911 -0.860 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.105 4.105 4 C -0.106 4.106 5 C -0.139 4.139 6 C -0.134 4.134 7 C -0.053 4.053 8 C 0.101 3.899 9 H 0.060 0.940 10 C -0.568 4.568 11 H 0.055 0.945 12 C -0.174 4.174 13 N -0.577 5.577 14 Si 0.751 3.249 15 H -0.187 1.187 16 H -0.210 1.210 17 H -0.172 1.172 18 N -0.307 5.307 19 C -0.078 4.078 20 C -0.192 4.192 21 C -0.167 4.167 22 C -0.137 4.137 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.024 0.976 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.688 9.311 -1.231 15.786 hybrid contribution 1.436 -1.334 -0.425 2.005 sum -11.252 7.977 -1.656 13.892 Atomic orbital electron populations 1.21752 0.94203 1.02021 1.02435 1.21510 0.96745 0.95966 1.01581 1.20566 0.88875 0.97472 1.03546 1.20048 0.96869 1.01190 0.92522 1.21189 0.93398 1.00838 0.98477 1.20884 0.94503 1.00725 0.97273 1.20203 0.96081 0.95340 0.93668 1.18487 0.89144 0.89008 0.93212 0.93975 1.21683 1.29280 1.02649 1.03204 0.94541 1.25873 0.94786 0.94800 1.01985 1.70039 1.33720 1.16026 1.37952 0.86059 0.79911 0.78524 0.80393 1.18701 1.21032 1.17197 1.61125 1.22623 1.40825 1.06104 1.21853 0.89728 0.96791 0.99436 1.21671 1.01151 0.98284 0.98084 1.21091 0.95243 1.03273 0.97140 1.21109 0.93046 1.00928 0.98577 0.91988 0.92002 0.92506 0.92920 0.92919 0.90152 0.90119 0.84665 0.87317 0.92389 0.85127 0.97574 0.92490 0.91485 0.92859 0.91138 0.87607 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.64 16 2 C -0.12 -2.55 5.92 30.60 0.18 -2.37 16 3 C -0.07 -1.47 5.35 29.85 0.16 -1.31 16 4 C -0.11 -3.20 5.13 -19.87 -0.10 -3.31 16 5 C -0.12 -3.98 9.70 22.27 0.22 -3.77 16 6 C -0.12 -4.57 9.27 22.27 0.21 -4.37 16 7 C -0.05 -2.27 4.93 -19.87 -0.10 -2.37 16 8 C 0.21 9.95 2.15 43.42 0.09 10.04 16 9 H 0.04 2.04 4.15 -2.39 -0.01 2.03 16 10 C -0.53 -29.71 8.56 25.60 0.22 -29.49 16 11 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 12 C 0.03 1.44 5.47 84.65 0.46 1.91 16 13 N -0.94 -57.95 13.96 21.45 0.30 -57.65 16 14 Si 0.93 43.97 27.02 68.60 1.85 45.82 16 15 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 17 H -0.25 -11.05 6.34 99.48 0.63 -10.42 16 18 N -0.68 -28.40 5.85 -499.34 -2.92 -31.32 16 19 C 0.05 1.99 6.20 86.30 0.54 2.53 16 20 C -0.13 -3.95 10.17 71.98 0.73 -3.21 16 21 C -0.15 -5.95 9.67 22.27 0.22 -5.74 16 22 C -0.12 -3.91 9.70 22.27 0.22 -3.69 16 23 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 29 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 30 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 31 H 0.11 4.29 7.45 -2.91 -0.02 4.27 16 32 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.33 13.94 7.90 -89.70 -0.71 13.23 16 34 H 0.01 0.26 7.97 -2.39 -0.02 0.24 16 35 H 0.06 2.15 8.06 -2.39 -0.02 2.13 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.11 4.20 7.64 -2.91 -0.02 4.18 16 40 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -63.95 326.46 3.19 -60.76 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.21 Total: 29.18 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 3.75 Total: -46.79 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -2.62 Total: -88.97 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.85 Total: 45.82 kcal Total: -63.95 3.19 -60.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393762302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.984 kcal (2) G-P(sol) polarization free energy of solvation -63.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds