Wall clock time and date at job start Mon Mar 30 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47273 * 2 1 4 4 C 1.50701 * 109.47450 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99916 * 89.99419 * 4 3 2 6 6 C 1.38233 * 119.99839 * 180.02562 * 5 4 3 7 7 C 1.38234 * 120.00048 * 359.95436 * 6 5 4 8 8 C 1.50701 * 119.99971 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.47121 * 346.55426 * 8 7 6 10 10 C 1.50698 * 109.47203 * 106.55598 * 8 7 6 11 11 H 1.07999 * 119.99738 * 359.97438 * 10 8 7 12 12 C 1.37876 * 120.00043 * 180.02562 * 10 8 7 13 13 N 1.31514 * 120.00097 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99915 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47257 * 359.97438 * 14 12 10 16 16 H 1.48508 * 109.46971 * 119.99714 * 14 12 10 17 17 H 1.48497 * 109.47015 * 239.99267 * 14 12 10 18 18 N 1.46902 * 109.47192 * 226.55790 * 8 7 6 19 19 C 1.46902 * 111.00269 * 85.21861 * 18 8 7 20 20 C 1.53002 * 109.47123 * 174.83564 * 19 18 8 21 21 C 1.38231 * 120.00175 * 0.28157 * 7 6 5 22 22 C 1.38228 * 119.99909 * 269.97705 * 4 3 2 23 23 H 1.08993 * 109.46927 * 300.00117 * 1 2 3 24 24 H 1.08999 * 109.46665 * 60.00375 * 1 2 3 25 25 H 1.09003 * 109.47019 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46847 * 239.99505 * 2 1 3 27 27 H 1.09001 * 109.46675 * 120.00165 * 2 1 3 28 28 H 1.09003 * 109.47290 * 59.99531 * 3 2 1 29 29 H 1.09004 * 109.47115 * 300.00160 * 3 2 1 30 30 H 1.07995 * 120.00160 * 359.97438 * 5 4 3 31 31 H 1.08005 * 119.99887 * 179.97438 * 6 5 4 32 32 H 0.96994 * 120.00058 * 180.02562 * 13 12 10 33 33 H 1.00906 * 110.99495 * 321.26772 * 18 8 7 34 34 H 1.09004 * 109.46535 * 54.83565 * 19 18 8 35 35 H 1.08999 * 109.47110 * 294.83719 * 19 18 8 36 36 H 1.08999 * 109.46930 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46942 * 300.00490 * 20 19 18 38 38 H 1.08999 * 109.46792 * 60.00223 * 20 19 18 39 39 H 1.08002 * 120.00234 * 179.72843 * 21 7 6 40 40 H 1.08008 * 120.00159 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2387 1.4422 -1.1962 6 6 5.6211 1.4417 -1.1956 7 6 6.3117 1.4424 0.0018 8 6 7.8187 1.4425 0.0024 9 1 8.1825 1.2029 -0.9968 10 6 8.3209 2.8046 0.4067 11 1 7.6189 3.5917 0.6394 12 6 9.6764 3.0463 0.4784 13 7 10.5312 2.0880 0.1945 14 14 10.2988 4.7346 0.9802 15 1 9.1437 5.6293 1.2456 16 1 11.1239 4.6129 2.2090 17 1 11.1237 5.3038 -0.1155 18 7 8.3081 0.4374 0.9556 19 6 8.3761 -0.8908 0.3317 20 6 9.0088 -1.8822 1.3104 21 6 5.6201 1.4378 1.1987 22 6 4.2377 1.4431 1.1980 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.6992 1.4415 -2.1317 31 1 6.1615 1.4410 -2.1308 32 1 11.4848 2.2580 0.2453 33 1 7.7354 0.4179 1.7862 34 1 8.9817 -0.8365 -0.5730 35 1 7.3703 -1.2241 0.0762 36 1 9.0597 -2.8675 0.8472 37 1 10.0146 -1.5487 1.5659 38 1 8.4031 -1.9363 2.2150 39 1 6.1597 1.4339 2.1342 40 1 3.6973 1.4440 2.1332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393762303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:01 Heat of formation + Delta-G solvation = 2.354908 kcal Electronic energy + Delta-G solvation = -17798.423564 eV Core-core repulsion = 15190.960244 eV Total energy + Delta-G solvation = -2607.463320 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.04085 -36.11859 -34.43729 -32.44557 -31.12965 -30.31337 -28.93058 -26.39037 -25.31338 -22.55372 -22.15058 -21.29793 -20.79853 -19.62194 -16.36691 -15.96669 -15.33777 -14.78467 -14.38401 -14.22492 -14.00891 -13.55451 -13.33425 -13.16589 -12.80514 -12.72339 -12.16761 -12.00536 -11.78189 -11.31305 -11.23822 -11.19039 -10.91230 -10.82906 -10.68117 -10.66622 -10.49704 -10.32054 -10.14468 -9.61728 -9.15306 -8.37272 -8.29207 -7.73728 -6.84184 -5.84090 -3.96733 2.03606 2.03773 3.35520 3.43881 3.47992 4.37770 4.55599 4.95584 4.96326 5.12385 5.29253 5.36697 5.51445 5.59977 5.64081 5.75957 5.77817 5.83047 5.90127 5.93159 5.97498 6.05624 6.13467 6.23957 6.28785 6.31494 6.37763 6.50882 6.62661 6.74074 6.87744 6.93294 7.11658 7.13597 7.15444 7.55108 7.69674 7.97156 8.26120 8.65263 8.82589 9.17283 9.70728 11.20473 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.005770 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.195449 B = 4851.646975 C = 5627.616659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.069 4.069 8 C 0.251 3.749 9 H 0.042 0.958 10 C -0.520 4.520 11 H 0.054 0.946 12 C 0.086 3.914 13 N -0.850 5.850 14 Si 0.883 3.117 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.286 1.286 18 N -0.645 5.645 19 C 0.059 3.941 20 C -0.141 4.141 21 C -0.115 4.115 22 C -0.120 4.120 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.254 0.746 33 H 0.312 0.688 34 H 0.063 0.937 35 H 0.000 1.000 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.119 0.881 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.441 -4.814 -0.167 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.110 4.110 4 C -0.112 4.112 5 C -0.139 4.139 6 C -0.141 4.141 7 C -0.072 4.072 8 C 0.143 3.857 9 H 0.060 0.940 10 C -0.559 4.559 11 H 0.072 0.928 12 C -0.121 4.121 13 N -0.485 5.485 14 Si 0.711 3.289 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.212 1.212 18 N -0.275 5.275 19 C -0.071 4.071 20 C -0.199 4.199 21 C -0.134 4.134 22 C -0.139 4.139 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.018 0.982 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.554 -4.744 -0.301 13.423 hybrid contribution -0.491 0.719 0.244 0.905 sum -13.045 -4.025 -0.056 13.651 Atomic orbital electron populations 1.21796 0.96145 1.01359 1.01626 1.21516 0.95094 0.96726 1.02301 1.20516 0.91794 0.96664 1.02057 1.19622 0.94728 1.03476 0.93414 1.20880 0.94311 1.01937 0.96762 1.21088 0.93562 1.01257 0.98175 1.21531 1.00380 0.93096 0.92147 1.18363 0.81723 0.92088 0.93477 0.94018 1.20883 0.91460 0.94386 1.49125 0.92794 1.24899 0.96910 0.95832 0.94427 1.70075 1.01359 1.31066 1.46007 0.86708 0.78860 0.85128 0.78188 1.19929 1.21080 1.21226 1.61074 1.56448 1.02565 1.07369 1.21808 0.96455 0.91053 0.97794 1.21706 1.01795 0.97506 0.98887 1.20973 0.93353 1.00583 0.98454 1.20895 0.94345 1.01859 0.96760 0.92860 0.92867 0.92947 0.92019 0.91998 0.91675 0.91697 0.87327 0.86763 0.93588 0.87009 0.91855 0.98214 0.93984 0.91943 0.94020 0.86303 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 3 C -0.07 -0.89 5.34 -27.89 -0.15 -1.04 16 4 C -0.11 -1.77 5.13 -104.63 -0.54 -2.30 16 5 C -0.12 -2.01 9.70 -39.58 -0.38 -2.40 16 6 C -0.12 -2.36 9.67 -39.58 -0.38 -2.75 16 7 C -0.07 -1.48 4.72 -104.63 -0.49 -1.97 16 8 C 0.25 6.15 2.09 -70.02 -0.15 6.01 16 9 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 10 C -0.52 -14.18 8.67 -34.44 -0.30 -14.48 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.09 2.37 5.39 -17.82 -0.10 2.27 16 13 N -0.85 -24.32 12.77 55.43 0.71 -23.61 16 14 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 N -0.64 -15.01 5.52 -109.18 -0.60 -15.62 16 19 C 0.06 1.21 6.23 -3.82 -0.02 1.19 16 20 C -0.14 -2.49 10.22 37.16 0.38 -2.12 16 21 C -0.12 -2.24 8.95 -39.58 -0.35 -2.59 16 22 C -0.12 -2.02 9.70 -39.58 -0.38 -2.41 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.11 2.13 7.99 -52.48 -0.42 1.71 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 33 H 0.31 6.87 6.71 -39.29 -0.26 6.60 16 34 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 35 H 0.00 0.00 8.09 -51.93 -0.42 -0.42 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.12 2.29 6.88 -52.49 -0.36 1.93 16 40 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -28.59 329.37 -9.49 -38.07 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.87 Total: 4.89 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -2.66 Total: -25.03 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.11 Total: -39.23 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.59 -9.49 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393762303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.430 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds