Wall clock time and date at job start Mon Mar 30 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47273 * 2 1 4 4 C 1.50701 * 109.47450 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99916 * 89.99419 * 4 3 2 6 6 C 1.38233 * 119.99839 * 180.02562 * 5 4 3 7 7 C 1.38234 * 120.00048 * 359.95436 * 6 5 4 8 8 C 1.50701 * 119.99971 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.47121 * 346.55426 * 8 7 6 10 10 C 1.50698 * 109.47203 * 106.55598 * 8 7 6 11 11 H 1.07999 * 119.99738 * 359.97438 * 10 8 7 12 12 C 1.37876 * 120.00043 * 180.02562 * 10 8 7 13 13 N 1.31514 * 120.00097 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99915 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47257 * 359.97438 * 14 12 10 16 16 H 1.48508 * 109.46971 * 119.99714 * 14 12 10 17 17 H 1.48497 * 109.47015 * 239.99267 * 14 12 10 18 18 N 1.46902 * 109.47192 * 226.55790 * 8 7 6 19 19 C 1.46902 * 111.00269 * 85.21861 * 18 8 7 20 20 C 1.53002 * 109.47123 * 174.83564 * 19 18 8 21 21 C 1.38231 * 120.00175 * 0.28157 * 7 6 5 22 22 C 1.38228 * 119.99909 * 269.97705 * 4 3 2 23 23 H 1.08993 * 109.46927 * 300.00117 * 1 2 3 24 24 H 1.08999 * 109.46665 * 60.00375 * 1 2 3 25 25 H 1.09003 * 109.47019 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46847 * 239.99505 * 2 1 3 27 27 H 1.09001 * 109.46675 * 120.00165 * 2 1 3 28 28 H 1.09003 * 109.47290 * 59.99531 * 3 2 1 29 29 H 1.09004 * 109.47115 * 300.00160 * 3 2 1 30 30 H 1.07995 * 120.00160 * 359.97438 * 5 4 3 31 31 H 1.08005 * 119.99887 * 179.97438 * 6 5 4 32 32 H 0.96994 * 120.00058 * 180.02562 * 13 12 10 33 33 H 1.00906 * 110.99495 * 321.26772 * 18 8 7 34 34 H 1.09004 * 109.46535 * 54.83565 * 19 18 8 35 35 H 1.08999 * 109.47110 * 294.83719 * 19 18 8 36 36 H 1.08999 * 109.46930 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46942 * 300.00490 * 20 19 18 38 38 H 1.08999 * 109.46792 * 60.00223 * 20 19 18 39 39 H 1.08002 * 120.00234 * 179.72843 * 21 7 6 40 40 H 1.08008 * 120.00159 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2387 1.4422 -1.1962 6 6 5.6211 1.4417 -1.1956 7 6 6.3117 1.4424 0.0018 8 6 7.8187 1.4425 0.0024 9 1 8.1825 1.2029 -0.9968 10 6 8.3209 2.8046 0.4067 11 1 7.6189 3.5917 0.6394 12 6 9.6764 3.0463 0.4784 13 7 10.5312 2.0880 0.1945 14 14 10.2988 4.7346 0.9802 15 1 9.1437 5.6293 1.2456 16 1 11.1239 4.6129 2.2090 17 1 11.1237 5.3038 -0.1155 18 7 8.3081 0.4374 0.9556 19 6 8.3761 -0.8908 0.3317 20 6 9.0088 -1.8822 1.3104 21 6 5.6201 1.4378 1.1987 22 6 4.2377 1.4431 1.1980 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.6992 1.4415 -2.1317 31 1 6.1615 1.4410 -2.1308 32 1 11.4848 2.2580 0.2453 33 1 7.7354 0.4179 1.7862 34 1 8.9817 -0.8365 -0.5730 35 1 7.3703 -1.2241 0.0762 36 1 9.0597 -2.8675 0.8472 37 1 10.0146 -1.5487 1.5659 38 1 8.4031 -1.9363 2.2150 39 1 6.1597 1.4339 2.1342 40 1 3.6973 1.4440 2.1332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393762303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:01 Heat of formation + Delta-G solvation = -12.444265 kcal Electronic energy + Delta-G solvation = -17799.065304 eV Core-core repulsion = 15190.960244 eV Total energy + Delta-G solvation = -2608.105060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47732 -37.67631 -35.60684 -34.42370 -32.60715 -31.72987 -30.37225 -27.99905 -26.85343 -24.06613 -23.60497 -22.63782 -22.17281 -21.11539 -18.43641 -17.48203 -16.54745 -16.42689 -16.00882 -15.69480 -15.35029 -14.91551 -14.79266 -14.51490 -14.26336 -14.11544 -13.55454 -13.23635 -13.14409 -12.94616 -12.82287 -12.60428 -12.54573 -12.39902 -12.06068 -11.97939 -11.87349 -11.75984 -11.43048 -11.35861 -11.10326 -10.50253 -9.71355 -9.23273 -8.64524 -7.93956 -6.14317 0.60749 0.61398 1.42037 1.44591 1.54933 2.48287 2.99021 3.25682 3.91879 3.98633 3.99457 4.22655 4.24313 4.31204 4.32872 4.36491 4.57571 4.63268 4.63757 4.73280 4.78551 4.90192 4.92597 4.97983 5.06594 5.12517 5.19265 5.24975 5.29223 5.36052 5.37826 5.43982 5.49971 5.66696 5.79663 5.80936 5.97050 6.20885 6.31329 6.66878 7.01127 7.19179 7.56662 9.08567 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.005770 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.195449 B = 4851.646975 C = 5627.616659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.070 4.070 4 C -0.102 4.102 5 C -0.118 4.118 6 C -0.139 4.139 7 C -0.098 4.098 8 C 0.258 3.742 9 H 0.003 0.997 10 C -0.533 4.533 11 H 0.042 0.958 12 C 0.039 3.961 13 N -0.880 5.880 14 Si 0.946 3.054 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.660 5.660 19 C 0.063 3.937 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.119 4.119 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.108 0.892 32 H 0.254 0.746 33 H 0.318 0.682 34 H 0.038 0.962 35 H 0.008 0.992 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.112 0.888 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.922 -4.867 0.458 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.107 4.107 4 C -0.102 4.102 5 C -0.136 4.136 6 C -0.158 4.158 7 C -0.100 4.100 8 C 0.150 3.850 9 H 0.021 0.979 10 C -0.572 4.572 11 H 0.060 0.940 12 C -0.164 4.164 13 N -0.516 5.516 14 Si 0.772 3.228 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.290 5.290 19 C -0.067 4.067 20 C -0.188 4.188 21 C -0.145 4.145 22 C -0.136 4.136 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.155 0.845 31 H 0.126 0.874 32 H 0.063 0.937 33 H 0.136 0.864 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.045 -4.797 0.325 15.795 hybrid contribution 0.177 0.707 0.013 0.729 sum -14.868 -4.090 0.338 15.424 Atomic orbital electron populations 1.21763 0.94378 1.02113 1.02316 1.21483 0.96603 0.95542 1.01805 1.20591 0.88813 0.97888 1.03439 1.20081 0.96901 1.00703 0.92499 1.21170 0.93104 1.00704 0.98615 1.21162 0.95084 1.02240 0.97311 1.21226 0.98531 0.96411 0.93850 1.17986 0.84225 0.91261 0.91485 0.97863 1.21153 0.91601 0.95606 1.48831 0.93960 1.25592 0.97137 0.99141 0.94551 1.70196 1.01415 1.32847 1.47147 0.85730 0.78150 0.81079 0.77836 1.19728 1.20727 1.20771 1.60890 1.56882 1.03639 1.07637 1.21760 0.96662 0.90641 0.97588 1.21612 1.00543 0.97800 0.98842 1.20978 0.94723 1.01438 0.97354 1.21197 0.93216 1.00648 0.98583 0.92182 0.92190 0.92245 0.92590 0.92539 0.90333 0.90356 0.84522 0.87427 0.93686 0.86379 0.94338 0.97425 0.91144 0.93683 0.92558 0.86974 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.12 -2.17 5.92 30.59 0.18 -1.99 16 3 C -0.07 -1.45 5.34 29.85 0.16 -1.29 16 4 C -0.10 -2.93 5.13 -19.87 -0.10 -3.03 16 5 C -0.12 -3.74 9.70 22.27 0.22 -3.52 16 6 C -0.14 -5.47 9.67 22.27 0.22 -5.25 16 7 C -0.10 -4.29 4.72 -19.87 -0.09 -4.39 16 8 C 0.26 13.29 2.09 43.42 0.09 13.38 16 9 H 0.00 0.20 7.51 -2.38 -0.02 0.18 16 10 C -0.53 -30.14 8.67 25.60 0.22 -29.92 16 11 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 12 C 0.04 2.22 5.39 84.65 0.46 2.67 16 13 N -0.88 -51.94 12.77 21.45 0.27 -51.67 16 14 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 15 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 18 N -0.66 -31.84 5.52 -499.34 -2.76 -34.59 16 19 C 0.06 2.68 6.23 86.30 0.54 3.21 16 20 C -0.13 -4.53 10.22 71.98 0.74 -3.79 16 21 C -0.13 -4.91 8.95 22.27 0.20 -4.71 16 22 C -0.12 -3.74 9.70 22.27 0.22 -3.52 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.46 8.08 -2.39 -0.02 1.45 16 29 H 0.08 1.46 8.09 -2.38 -0.02 1.44 16 30 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 31 H 0.11 4.22 7.99 -2.91 -0.02 4.19 16 32 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.32 14.37 6.71 -89.69 -0.60 13.77 16 34 H 0.04 1.78 7.93 -2.38 -0.02 1.77 16 35 H 0.01 0.31 8.09 -2.39 -0.02 0.29 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.11 4.39 6.88 -2.91 -0.02 4.37 16 40 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -63.10 329.37 3.68 -59.42 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.39 Total: 23.63 kcal Atomic # 6 Polarization: -47.30 SS G_CDS: 3.75 Total: -43.55 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -2.48 Total: -86.26 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.10 3.68 -59.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393762303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.977 kcal (2) G-P(sol) polarization free energy of solvation -63.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds