Wall clock time and date at job start Mon Mar 30 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 H 1.08996 * 109.46999 * 304.99966 * 3 2 1 5 5 C 1.53001 * 109.46921 * 65.00160 * 3 2 1 6 6 C 1.52999 * 109.47125 * 185.00237 * 3 2 1 7 7 C 1.52998 * 109.47013 * 175.00491 * 6 3 2 8 8 N 1.46501 * 109.47158 * 180.02562 * 7 6 3 9 9 C 1.38854 * 120.00355 * 179.97438 * 8 7 6 10 10 C 1.39566 * 119.84025 * 359.72691 * 9 8 7 11 11 C 1.36344 * 120.16171 * 179.71596 * 10 9 8 12 12 C 1.40881 * 119.83367 * 0.55396 * 11 10 9 13 13 C 1.41138 * 120.15410 * 179.69677 * 12 11 10 14 14 H 1.08007 * 119.99850 * 204.63052 * 13 12 11 15 15 C 1.39867 * 120.00114 * 24.62893 * 13 12 11 16 16 N 1.30899 * 119.99479 * 17.95643 * 15 13 12 17 17 Si 1.86798 * 120.00026 * 197.95232 * 15 13 12 18 18 H 1.48502 * 109.46810 * 59.99878 * 17 15 13 19 19 H 1.48497 * 109.46824 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47316 * 300.00185 * 17 15 13 21 21 C 1.40888 * 119.68845 * 359.71906 * 12 11 10 22 22 C 1.36336 * 119.84008 * 359.97438 * 21 12 11 23 23 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47385 * 299.99647 * 1 2 3 25 25 H 1.08997 * 109.47420 * 60.00226 * 1 2 3 26 26 H 1.09000 * 109.46934 * 240.00578 * 2 1 3 27 27 H 1.09002 * 109.47194 * 120.00192 * 2 1 3 28 28 H 1.09000 * 109.46734 * 180.02562 * 5 3 2 29 29 H 1.08996 * 109.47442 * 60.00078 * 5 3 2 30 30 H 1.08999 * 109.47308 * 299.99584 * 5 3 2 31 31 H 1.09007 * 109.46952 * 295.00094 * 6 3 2 32 32 H 1.08998 * 109.47403 * 55.00202 * 6 3 2 33 33 H 1.09007 * 109.46937 * 299.99612 * 7 6 3 34 34 H 1.09001 * 109.47770 * 59.99568 * 7 6 3 35 35 H 0.97000 * 120.00020 * 359.97438 * 8 7 6 36 36 H 1.08008 * 119.92010 * 359.97438 * 10 9 8 37 37 H 1.08000 * 120.08121 * 180.27370 * 11 10 9 38 38 H 0.97010 * 119.99439 * 179.97438 * 16 15 13 39 39 H 1.08006 * 120.07939 * 179.97438 * 21 12 11 40 40 H 1.08004 * 119.92175 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4444 -0.1258 7 6 4.0643 2.8851 -0.2511 8 7 5.5243 2.8869 -0.3721 9 6 6.2090 4.0882 -0.4993 10 6 5.5025 5.2917 -0.5172 11 6 6.1686 6.4754 -0.6360 12 6 7.5726 6.4809 -0.7526 13 6 8.2685 7.7019 -0.8824 14 1 9.2390 7.7227 -1.3558 15 6 7.7012 8.8850 -0.3979 16 7 6.7216 8.8341 0.4688 17 14 8.3416 10.5377 -0.9877 18 1 8.1747 10.6364 -2.4600 19 1 7.5781 11.6280 -0.3292 20 1 9.7807 10.6625 -0.6433 21 6 8.2787 5.2618 -0.7395 22 6 7.6000 4.0860 -0.6138 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.9981 3.1543 1.3072 29 1 2.0698 1.5875 2.1492 30 1 0.5488 2.1252 1.3970 31 1 4.0029 0.9836 0.7596 32 1 3.8570 0.8802 -1.0114 33 1 3.6261 3.3459 -1.1365 34 1 3.7721 3.4494 0.6345 35 1 6.0127 2.0489 -0.3634 36 1 4.4258 5.2856 -0.4326 37 1 5.6210 7.4062 -0.6453 38 1 6.3285 9.6547 0.8051 39 1 9.3550 5.2586 -0.8289 40 1 8.1399 3.1507 -0.6040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394453356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:08 Heat of formation + Delta-G solvation = -8.566131 kcal Electronic energy + Delta-G solvation = -17203.969254 eV Core-core repulsion = 14596.032363 eV Total energy + Delta-G solvation = -2607.936891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.19621 -37.25340 -34.87175 -33.04233 -31.03657 -29.41239 -28.87556 -27.37221 -25.23232 -23.85928 -22.18012 -20.81276 -19.89540 -19.78815 -17.16485 -16.07266 -15.48544 -15.29555 -14.88327 -14.48419 -14.00935 -13.76315 -13.50421 -12.89532 -12.61658 -12.54699 -12.06888 -12.04934 -11.99847 -11.65939 -11.49031 -11.43451 -10.99978 -10.96728 -10.87295 -10.64237 -10.57971 -10.43554 -10.32613 -9.66736 -9.24276 -9.16617 -8.47132 -7.45155 -6.60396 -6.33903 -3.99355 2.96377 3.13962 3.16393 3.19690 3.39892 4.08134 4.28770 4.71813 4.76332 4.80822 4.90821 5.14979 5.30658 5.39677 5.49222 5.55926 5.65632 5.75482 5.83535 5.86185 5.90911 5.93211 6.04282 6.15813 6.17659 6.31869 6.33842 6.40321 6.43522 6.98064 6.99090 7.24236 7.39900 7.60283 7.73244 7.88980 8.18986 8.33948 8.54547 8.75980 8.84997 9.09762 9.19625 10.41126 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041658 B = 0.003784 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.983278 B = 7398.495537 C = 7902.362159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.124 4.124 7 C 0.137 3.863 8 N -0.764 5.764 9 C 0.093 3.907 10 C -0.164 4.164 11 C -0.124 4.124 12 C 0.074 3.926 13 C -0.468 4.468 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.808 5.808 17 Si 0.903 3.097 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.187 4.187 22 C -0.160 4.160 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.383 0.617 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.276 0.724 39 H 0.091 0.909 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.666 -11.919 0.001 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.108 4.108 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.162 4.162 7 C 0.012 3.988 8 N -0.399 5.399 9 C -0.005 4.005 10 C -0.186 4.186 11 C -0.144 4.144 12 C 0.071 3.929 13 C -0.499 4.499 14 H 0.090 0.910 15 C -0.140 4.140 16 N -0.436 5.436 17 Si 0.728 3.272 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.207 4.207 22 C -0.183 4.183 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.215 0.785 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.994 -11.659 0.161 15.358 hybrid contribution 0.450 0.501 -0.129 0.686 sum -9.544 -11.158 0.032 14.683 Atomic orbital electron populations 1.21825 0.96044 1.01290 1.01963 1.21571 0.95760 0.96481 1.01833 1.21096 0.94970 0.96013 0.98726 0.91050 1.21953 1.00971 1.01087 0.96913 1.21806 0.95156 0.97230 1.02007 1.21062 0.82369 0.95370 0.99993 1.43891 1.04090 1.05441 1.86505 1.17372 0.90834 0.85322 1.06925 1.20098 0.97188 0.92050 1.09300 1.20933 0.94529 0.96068 1.02889 1.17485 0.91742 0.92076 0.91629 1.19330 1.04211 0.91425 1.34958 0.91014 1.25790 0.94334 1.00937 0.92987 1.69855 1.21815 1.29911 1.21993 0.86465 0.79609 0.81103 0.80005 1.19116 1.20609 1.19290 1.20544 0.97417 0.92479 1.10278 1.19807 0.91849 0.96919 1.09689 0.93081 0.92462 0.92797 0.92145 0.92113 0.92048 0.92799 0.92714 0.91765 0.91830 0.93813 0.93328 0.78533 0.89458 0.86409 0.91315 0.89086 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.16 0.36 -0.84 16 2 C -0.12 -1.03 5.40 -26.73 -0.14 -1.17 16 3 C -0.09 -0.90 2.39 -90.62 -0.22 -1.11 16 4 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.15 -1.54 8.70 37.16 0.32 -1.22 16 6 C -0.12 -1.44 4.80 -26.73 -0.13 -1.57 16 7 C 0.14 2.10 4.65 -4.04 -0.02 2.08 16 8 N -0.76 -13.77 5.70 -58.50 -0.33 -14.11 16 9 C 0.09 2.09 6.67 -83.69 -0.56 1.53 16 10 C -0.16 -3.97 9.23 -39.77 -0.37 -4.34 16 11 C -0.12 -3.34 8.64 -39.26 -0.34 -3.68 16 12 C 0.07 2.03 5.57 -106.79 -0.60 1.44 16 13 C -0.47 -12.95 9.03 -37.87 -0.34 -13.29 16 14 H 0.07 1.91 7.91 -52.48 -0.41 1.50 16 15 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 16 N -0.81 -21.81 10.96 55.54 0.61 -21.20 16 17 Si 0.90 19.51 29.60 -169.99 -5.03 14.48 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C -0.19 -4.75 9.74 -39.26 -0.38 -5.13 16 22 C -0.16 -3.71 9.82 -39.77 -0.39 -4.10 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.70 7.91 -51.93 -0.41 0.29 16 34 H 0.05 0.79 6.36 -51.93 -0.33 0.46 16 35 H 0.38 6.12 8.47 -40.82 -0.35 5.78 16 36 H 0.09 1.93 6.68 -52.48 -0.35 1.58 16 37 H 0.12 3.27 6.16 -52.49 -0.32 2.95 16 38 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 39 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 40 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -28.43 319.75 -9.39 -37.82 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.56 Total: 7.73 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -2.89 Total: -29.54 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.28 Total: -35.31 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.43 -9.39 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394453356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.253 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds