Wall clock time and date at job start Mon Mar 30 2020 06:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 H 1.08996 * 109.46999 * 304.99966 * 3 2 1 5 5 C 1.53001 * 109.46921 * 65.00160 * 3 2 1 6 6 C 1.52999 * 109.47125 * 185.00237 * 3 2 1 7 7 C 1.52998 * 109.47013 * 175.00491 * 6 3 2 8 8 N 1.46501 * 109.47158 * 180.02562 * 7 6 3 9 9 C 1.38854 * 120.00355 * 179.97438 * 8 7 6 10 10 C 1.39566 * 119.84025 * 359.72691 * 9 8 7 11 11 C 1.36344 * 120.16171 * 179.71596 * 10 9 8 12 12 C 1.40881 * 119.83367 * 0.55396 * 11 10 9 13 13 C 1.41138 * 120.15410 * 179.69677 * 12 11 10 14 14 H 1.08007 * 119.99850 * 204.63052 * 13 12 11 15 15 C 1.39867 * 120.00114 * 24.62893 * 13 12 11 16 16 N 1.30899 * 119.99479 * 17.95643 * 15 13 12 17 17 Si 1.86798 * 120.00026 * 197.95232 * 15 13 12 18 18 H 1.48502 * 109.46810 * 59.99878 * 17 15 13 19 19 H 1.48497 * 109.46824 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47316 * 300.00185 * 17 15 13 21 21 C 1.40888 * 119.68845 * 359.71906 * 12 11 10 22 22 C 1.36336 * 119.84008 * 359.97438 * 21 12 11 23 23 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47385 * 299.99647 * 1 2 3 25 25 H 1.08997 * 109.47420 * 60.00226 * 1 2 3 26 26 H 1.09000 * 109.46934 * 240.00578 * 2 1 3 27 27 H 1.09002 * 109.47194 * 120.00192 * 2 1 3 28 28 H 1.09000 * 109.46734 * 180.02562 * 5 3 2 29 29 H 1.08996 * 109.47442 * 60.00078 * 5 3 2 30 30 H 1.08999 * 109.47308 * 299.99584 * 5 3 2 31 31 H 1.09007 * 109.46952 * 295.00094 * 6 3 2 32 32 H 1.08998 * 109.47403 * 55.00202 * 6 3 2 33 33 H 1.09007 * 109.46937 * 299.99612 * 7 6 3 34 34 H 1.09001 * 109.47770 * 59.99568 * 7 6 3 35 35 H 0.97000 * 120.00020 * 359.97438 * 8 7 6 36 36 H 1.08008 * 119.92010 * 359.97438 * 10 9 8 37 37 H 1.08000 * 120.08121 * 180.27370 * 11 10 9 38 38 H 0.97010 * 119.99439 * 179.97438 * 16 15 13 39 39 H 1.08006 * 120.07939 * 179.97438 * 21 12 11 40 40 H 1.08004 * 119.92175 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4444 -0.1258 7 6 4.0643 2.8851 -0.2511 8 7 5.5243 2.8869 -0.3721 9 6 6.2090 4.0882 -0.4993 10 6 5.5025 5.2917 -0.5172 11 6 6.1686 6.4754 -0.6360 12 6 7.5726 6.4809 -0.7526 13 6 8.2685 7.7019 -0.8824 14 1 9.2390 7.7227 -1.3558 15 6 7.7012 8.8850 -0.3979 16 7 6.7216 8.8341 0.4688 17 14 8.3416 10.5377 -0.9877 18 1 8.1747 10.6364 -2.4600 19 1 7.5781 11.6280 -0.3292 20 1 9.7807 10.6625 -0.6433 21 6 8.2787 5.2618 -0.7395 22 6 7.6000 4.0860 -0.6138 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.9981 3.1543 1.3072 29 1 2.0698 1.5875 2.1492 30 1 0.5488 2.1252 1.3970 31 1 4.0029 0.9836 0.7596 32 1 3.8570 0.8802 -1.0114 33 1 3.6261 3.3459 -1.1365 34 1 3.7721 3.4494 0.6345 35 1 6.0127 2.0489 -0.3634 36 1 4.4258 5.2856 -0.4326 37 1 5.6210 7.4062 -0.6453 38 1 6.3285 9.6547 0.8051 39 1 9.3550 5.2586 -0.8289 40 1 8.1399 3.1507 -0.6040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394453356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:07 Heat of formation + Delta-G solvation = -22.690482 kcal Electronic energy + Delta-G solvation = -17204.581732 eV Core-core repulsion = 14596.032363 eV Total energy + Delta-G solvation = -2608.549369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85272 -38.39962 -36.44396 -34.78438 -32.20785 -31.35109 -30.35883 -28.61943 -26.50881 -25.41549 -23.50624 -22.48213 -21.52458 -20.75987 -19.14936 -17.76734 -16.84347 -16.53536 -16.35765 -15.70811 -15.48298 -15.01718 -14.64529 -14.32973 -14.19395 -13.95129 -13.77363 -13.41281 -13.25837 -12.83360 -12.73233 -12.72650 -12.54051 -12.47421 -12.28706 -11.92713 -11.62132 -11.48302 -11.36444 -11.28277 -11.16461 -11.02236 -10.27206 -9.41177 -8.54678 -8.16200 -6.00556 1.11170 1.18566 1.40126 1.51307 1.60315 2.27648 2.84346 2.91477 3.84625 3.85242 3.96099 4.06267 4.33843 4.42468 4.43604 4.51467 4.60509 4.63518 4.72778 4.77788 4.90408 4.98809 5.07333 5.14136 5.15535 5.18045 5.22286 5.24998 5.28259 5.32171 5.46013 5.55918 5.57306 5.69190 5.80566 5.96606 6.18740 6.39113 6.67263 6.87318 7.08372 7.15946 7.33657 8.48573 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041658 B = 0.003784 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.983278 B = 7398.495537 C = 7902.362159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.087 4.087 4 H 0.068 0.932 5 C -0.152 4.152 6 C -0.112 4.112 7 C 0.134 3.866 8 N -0.753 5.753 9 C 0.109 3.891 10 C -0.176 4.176 11 C -0.144 4.144 12 C 0.035 3.965 13 C -0.507 4.507 14 H 0.069 0.931 15 C 0.031 3.969 16 N -0.842 5.842 17 Si 0.978 3.022 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.261 1.261 21 C -0.196 4.196 22 C -0.166 4.166 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.397 0.603 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.282 0.718 39 H 0.098 0.902 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 -13.419 -0.113 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.106 4.106 4 H 0.086 0.914 5 C -0.209 4.209 6 C -0.150 4.150 7 C 0.010 3.990 8 N -0.389 5.389 9 C 0.009 3.991 10 C -0.198 4.198 11 C -0.164 4.164 12 C 0.032 3.968 13 C -0.538 4.538 14 H 0.087 0.913 15 C -0.181 4.181 16 N -0.470 5.470 17 Si 0.799 3.201 18 H -0.188 1.188 19 H -0.194 1.194 20 H -0.186 1.186 21 C -0.216 4.216 22 C -0.188 4.188 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.231 0.769 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.526 -13.214 0.051 16.894 hybrid contribution 0.538 0.784 -0.069 0.954 sum -9.988 -12.429 -0.017 15.945 Atomic orbital electron populations 1.21824 0.95396 1.01942 1.01962 1.21536 0.96313 0.95196 1.02245 1.21080 0.93827 0.97160 0.98490 0.91377 1.21950 1.01755 1.00085 0.97128 1.21725 0.96103 0.94471 1.02729 1.21211 0.80580 0.97993 0.99244 1.43963 1.05324 1.04481 1.85091 1.17501 0.91026 0.86408 1.04150 1.20246 0.98045 0.92020 1.09528 1.20863 0.94565 0.96369 1.04639 1.17823 0.92390 0.93188 0.93418 1.19575 1.04787 0.92757 1.36688 0.91320 1.26636 0.94483 1.04462 0.92519 1.69923 1.23040 1.31182 1.22861 0.85329 0.79194 0.76192 0.79371 1.18777 1.19450 1.18568 1.20775 0.98021 0.92773 1.10056 1.20118 0.92300 0.97510 1.08869 0.92144 0.92415 0.92884 0.91710 0.91726 0.93696 0.92535 0.91601 0.91138 0.90890 0.94443 0.94204 0.76901 0.88024 0.88326 0.90756 0.88374 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 71.98 0.70 -1.34 16 2 C -0.12 -1.69 5.40 30.59 0.17 -1.53 16 3 C -0.09 -1.56 2.39 -10.79 -0.03 -1.58 16 4 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.15 -2.83 8.70 71.98 0.63 -2.21 16 6 C -0.11 -2.32 4.80 30.59 0.15 -2.17 16 7 C 0.13 3.87 4.65 86.38 0.40 4.27 16 8 N -0.75 -25.46 5.70 -338.98 -1.93 -27.39 16 9 C 0.11 4.77 6.67 38.67 0.26 5.03 16 10 C -0.18 -8.57 9.23 22.15 0.20 -8.37 16 11 C -0.14 -8.01 8.64 22.48 0.19 -7.82 16 12 C 0.03 1.98 5.57 -21.27 -0.12 1.86 16 13 C -0.51 -28.99 9.03 23.38 0.21 -28.78 16 14 H 0.07 3.79 7.91 -2.91 -0.02 3.77 16 15 C 0.03 1.65 5.13 85.23 0.44 2.09 16 16 N -0.84 -46.79 10.96 21.82 0.24 -46.55 16 17 Si 0.98 40.66 29.60 68.60 2.03 42.69 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 21 C -0.20 -10.04 9.74 22.47 0.22 -9.82 16 22 C -0.17 -7.44 9.82 22.15 0.22 -7.22 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.75 6.56 -2.39 -0.02 0.74 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.04 0.98 6.57 -2.39 -0.02 0.96 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.07 6.57 -2.39 -0.02 1.05 16 31 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.15 7.91 -2.38 -0.02 1.13 16 34 H 0.04 1.25 6.36 -2.39 -0.02 1.23 16 35 H 0.40 11.41 8.47 -92.71 -0.79 10.63 16 36 H 0.10 4.53 6.68 -2.91 -0.02 4.51 16 37 H 0.10 5.75 6.16 -2.91 -0.02 5.73 16 38 H 0.28 14.29 8.30 -92.70 -0.77 13.52 16 39 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.13 319.75 4.19 -57.94 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.22 Total: 30.90 kcal Atomic # 6 Polarization: -61.22 SS G_CDS: 3.63 Total: -57.58 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.69 Total: -73.94 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -62.13 4.19 -57.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394453356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.249 kcal (2) G-P(sol) polarization free energy of solvation -62.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds