Wall clock time and date at job start Mon Mar 30 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47298 * 2 1 4 4 H 1.08997 * 109.46608 * 55.00266 * 3 2 1 5 5 C 1.53001 * 109.47179 * 295.00342 * 3 2 1 6 6 C 1.52998 * 109.47331 * 175.00274 * 3 2 1 7 7 C 1.52997 * 109.47041 * 185.00155 * 6 3 2 8 8 N 1.46499 * 109.47396 * 180.02562 * 7 6 3 9 9 C 1.38858 * 120.00559 * 179.97438 * 8 7 6 10 10 C 1.39567 * 119.83687 * 359.72730 * 9 8 7 11 11 C 1.36346 * 120.15683 * 179.71826 * 10 9 8 12 12 C 1.40878 * 119.83453 * 0.54954 * 11 10 9 13 13 C 1.41144 * 120.15502 * 179.69999 * 12 11 10 14 14 H 1.07999 * 120.00001 * 204.63193 * 13 12 11 15 15 C 1.39861 * 119.99863 * 24.62579 * 13 12 11 16 16 N 1.30907 * 120.00009 * 17.96157 * 15 13 12 17 17 Si 1.86804 * 119.99961 * 197.96820 * 15 13 12 18 18 H 1.48497 * 109.47010 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47099 * 119.99918 * 17 15 13 20 20 H 1.48498 * 109.46748 * 239.99859 * 17 15 13 21 21 C 1.40887 * 119.69123 * 359.72275 * 12 11 10 22 22 C 1.36330 * 119.83788 * 359.97438 * 21 12 11 23 23 H 1.09001 * 109.46761 * 299.99435 * 1 2 3 24 24 H 1.08998 * 109.47313 * 59.99983 * 1 2 3 25 25 H 1.08997 * 109.46767 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47160 * 240.00369 * 2 1 3 27 27 H 1.09003 * 109.47728 * 120.00242 * 2 1 3 28 28 H 1.08999 * 109.47047 * 299.99989 * 5 3 2 29 29 H 1.09003 * 109.46856 * 59.99536 * 5 3 2 30 30 H 1.08997 * 109.47548 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.47202 * 64.99912 * 6 3 2 32 32 H 1.09002 * 109.46915 * 305.00131 * 6 3 2 33 33 H 1.08997 * 109.47321 * 59.99829 * 7 6 3 34 34 H 1.09002 * 109.47247 * 299.99773 * 7 6 3 35 35 H 0.97006 * 119.99754 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.92442 * 359.97259 * 10 9 8 37 37 H 1.08002 * 120.07982 * 180.27074 * 11 10 9 38 38 H 0.96997 * 119.99868 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.07794 * 179.97438 * 21 12 11 40 40 H 1.08006 * 119.92446 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8850 0.2511 8 7 5.5246 2.8869 0.3708 9 6 6.2094 4.0882 0.4968 10 6 5.5038 5.2924 0.5033 11 6 6.1692 6.4755 0.6325 12 6 7.5732 6.4810 0.7479 13 6 8.2694 7.7021 0.8755 14 1 9.3038 7.7683 0.5724 15 6 7.6195 8.8266 1.3945 16 7 6.5121 8.6852 2.0782 17 14 8.3316 10.5303 1.1120 18 1 9.5799 10.4191 0.3155 19 1 7.3465 11.3627 0.3757 20 1 8.6346 11.1633 2.4206 21 6 8.2793 5.2619 0.7348 22 6 7.6004 4.0861 0.6112 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 2.0698 1.5876 -2.1491 29 1 0.5489 2.1253 -1.3968 30 1 1.9982 3.1544 -1.3072 31 1 4.0029 0.9836 -0.7597 32 1 3.8571 0.8800 1.0112 33 1 3.6264 3.3457 1.1364 34 1 3.7722 3.4494 -0.6345 35 1 6.0130 2.0488 0.3620 36 1 4.4279 5.2869 0.4100 37 1 5.6216 7.4063 0.6418 38 1 6.0616 9.4650 2.4384 39 1 9.3558 5.2588 0.8224 40 1 8.1403 3.1507 0.6006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394453360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:11 Heat of formation + Delta-G solvation = -8.553607 kcal Electronic energy + Delta-G solvation = -17200.957321 eV Core-core repulsion = 14593.020973 eV Total energy + Delta-G solvation = -2607.936348 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.19824 -37.25545 -34.87267 -33.04227 -31.03749 -29.41428 -28.87865 -27.37703 -25.23518 -23.86138 -22.18105 -20.81393 -19.89777 -19.79015 -17.16834 -16.07410 -15.48906 -15.30134 -14.87193 -14.48813 -14.01609 -13.75994 -13.50720 -12.90784 -12.60675 -12.54331 -12.11124 -12.05839 -11.98102 -11.67297 -11.47198 -11.41207 -11.08359 -10.98943 -10.79099 -10.65596 -10.56732 -10.41513 -10.34288 -9.65221 -9.24856 -9.17435 -8.47137 -7.45311 -6.60650 -6.33889 -3.99416 2.93448 3.13793 3.17533 3.23025 3.38604 4.08297 4.28621 4.71607 4.76395 4.80328 4.90769 5.14834 5.30633 5.39123 5.48839 5.55477 5.65542 5.75095 5.83212 5.86075 5.90707 5.92830 6.03746 6.15281 6.17734 6.31738 6.33631 6.40336 6.42805 6.97970 6.98959 7.24274 7.39785 7.60146 7.73237 7.88862 8.19330 8.33825 8.54413 8.76004 8.85039 9.09864 9.19490 10.40974 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041589 B = 0.003770 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.086446 B = 7425.543597 C = 7894.316684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.124 4.124 7 C 0.137 3.863 8 N -0.764 5.764 9 C 0.093 3.907 10 C -0.165 4.165 11 C -0.124 4.124 12 C 0.073 3.927 13 C -0.467 4.467 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.808 5.808 17 Si 0.902 3.098 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.277 1.277 21 C -0.187 4.187 22 C -0.161 4.161 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.383 0.617 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.275 0.725 39 H 0.091 0.909 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 -11.733 -3.621 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.209 4.209 6 C -0.162 4.162 7 C 0.012 3.988 8 N -0.399 5.399 9 C -0.004 4.004 10 C -0.186 4.186 11 C -0.144 4.144 12 C 0.070 3.930 13 C -0.498 4.498 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.436 5.436 17 Si 0.727 3.273 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.207 4.207 22 C -0.183 4.183 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.215 0.785 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.707 -11.492 -3.498 15.445 hybrid contribution 0.435 0.512 0.033 0.673 sum -9.272 -10.980 -3.464 14.783 Atomic orbital electron populations 1.21825 0.96041 1.01293 1.01964 1.21573 0.95762 0.96474 1.01835 1.21098 0.94981 0.96026 0.98730 0.91017 1.21950 1.00974 1.01040 0.96919 1.21804 0.95148 0.97234 1.02007 1.21059 0.82376 0.95364 0.99995 1.43894 1.04081 1.05443 1.86508 1.17375 0.90770 0.85344 1.06940 1.20099 0.97191 0.92095 1.09262 1.20935 0.94934 0.96201 1.02335 1.17498 0.91939 0.92051 0.91511 1.19390 0.98593 0.93865 1.37951 0.90942 1.25794 0.94539 1.00924 0.92828 1.69870 1.16486 1.31648 1.25573 0.86374 0.80024 0.82137 0.78762 1.18655 1.19987 1.20310 1.20544 0.97725 0.92194 1.10217 1.19807 0.91837 0.96922 1.09709 0.92779 0.92476 0.93078 0.92128 0.92128 0.92822 0.92714 0.92084 0.91783 0.91811 0.93747 0.93393 0.78531 0.89456 0.86405 0.91431 0.89077 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.16 0.36 -0.84 16 2 C -0.12 -1.03 5.40 -26.73 -0.14 -1.18 16 3 C -0.09 -0.90 2.39 -90.62 -0.22 -1.12 16 4 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.15 -1.51 8.70 37.16 0.32 -1.18 16 6 C -0.12 -1.44 4.80 -26.73 -0.13 -1.56 16 7 C 0.14 2.10 4.65 -4.04 -0.02 2.08 16 8 N -0.76 -13.76 5.70 -58.50 -0.33 -14.10 16 9 C 0.09 2.09 6.67 -83.69 -0.56 1.53 16 10 C -0.16 -3.98 9.23 -39.77 -0.37 -4.34 16 11 C -0.12 -3.33 8.64 -39.26 -0.34 -3.67 16 12 C 0.07 2.02 5.57 -106.79 -0.60 1.42 16 13 C -0.47 -12.91 9.03 -37.87 -0.34 -13.25 16 14 H 0.07 1.94 7.91 -52.49 -0.41 1.52 16 15 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 16 N -0.81 -21.81 10.96 55.54 0.61 -21.20 16 17 Si 0.90 19.50 29.60 -169.99 -5.03 14.47 16 18 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.19 -4.74 9.74 -39.27 -0.38 -5.12 16 22 C -0.16 -3.71 9.82 -39.77 -0.39 -4.10 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 30 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.73 7.94 -51.93 -0.41 0.31 16 34 H 0.05 0.76 6.34 -51.93 -0.33 0.43 16 35 H 0.38 6.12 8.47 -40.82 -0.35 5.77 16 36 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 37 H 0.12 3.27 6.16 -52.49 -0.32 2.95 16 38 H 0.27 6.77 8.30 -40.82 -0.34 6.43 16 39 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -28.48 319.75 -9.39 -37.86 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.56 Total: 7.63 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -2.89 Total: -29.49 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.28 Total: -35.30 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.48 -9.39 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394453360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.311 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds