Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47298 * 2 1 4 4 H 1.08997 * 109.46608 * 55.00266 * 3 2 1 5 5 C 1.53001 * 109.47179 * 295.00342 * 3 2 1 6 6 C 1.52998 * 109.47331 * 175.00274 * 3 2 1 7 7 C 1.52997 * 109.47041 * 185.00155 * 6 3 2 8 8 N 1.46499 * 109.47396 * 180.02562 * 7 6 3 9 9 C 1.38858 * 120.00559 * 179.97438 * 8 7 6 10 10 C 1.39567 * 119.83687 * 359.72730 * 9 8 7 11 11 C 1.36346 * 120.15683 * 179.71826 * 10 9 8 12 12 C 1.40878 * 119.83453 * 0.54954 * 11 10 9 13 13 C 1.41144 * 120.15502 * 179.69999 * 12 11 10 14 14 H 1.07999 * 120.00001 * 204.63193 * 13 12 11 15 15 C 1.39861 * 119.99863 * 24.62579 * 13 12 11 16 16 N 1.30907 * 120.00009 * 17.96157 * 15 13 12 17 17 Si 1.86804 * 119.99961 * 197.96820 * 15 13 12 18 18 H 1.48497 * 109.47010 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47099 * 119.99918 * 17 15 13 20 20 H 1.48498 * 109.46748 * 239.99859 * 17 15 13 21 21 C 1.40887 * 119.69123 * 359.72275 * 12 11 10 22 22 C 1.36330 * 119.83788 * 359.97438 * 21 12 11 23 23 H 1.09001 * 109.46761 * 299.99435 * 1 2 3 24 24 H 1.08998 * 109.47313 * 59.99983 * 1 2 3 25 25 H 1.08997 * 109.46767 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47160 * 240.00369 * 2 1 3 27 27 H 1.09003 * 109.47728 * 120.00242 * 2 1 3 28 28 H 1.08999 * 109.47047 * 299.99989 * 5 3 2 29 29 H 1.09003 * 109.46856 * 59.99536 * 5 3 2 30 30 H 1.08997 * 109.47548 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.47202 * 64.99912 * 6 3 2 32 32 H 1.09002 * 109.46915 * 305.00131 * 6 3 2 33 33 H 1.08997 * 109.47321 * 59.99829 * 7 6 3 34 34 H 1.09002 * 109.47247 * 299.99773 * 7 6 3 35 35 H 0.97006 * 119.99754 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.92442 * 359.97259 * 10 9 8 37 37 H 1.08002 * 120.07982 * 180.27074 * 11 10 9 38 38 H 0.96997 * 119.99868 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.07794 * 179.97438 * 21 12 11 40 40 H 1.08006 * 119.92446 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8850 0.2511 8 7 5.5246 2.8869 0.3708 9 6 6.2094 4.0882 0.4968 10 6 5.5038 5.2924 0.5033 11 6 6.1692 6.4755 0.6325 12 6 7.5732 6.4810 0.7479 13 6 8.2694 7.7021 0.8755 14 1 9.3038 7.7683 0.5724 15 6 7.6195 8.8266 1.3945 16 7 6.5121 8.6852 2.0782 17 14 8.3316 10.5303 1.1120 18 1 9.5799 10.4191 0.3155 19 1 7.3465 11.3627 0.3757 20 1 8.6346 11.1633 2.4206 21 6 8.2793 5.2619 0.7348 22 6 7.6004 4.0861 0.6112 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 2.0698 1.5876 -2.1491 29 1 0.5489 2.1253 -1.3968 30 1 1.9982 3.1544 -1.3072 31 1 4.0029 0.9836 -0.7597 32 1 3.8571 0.8800 1.0112 33 1 3.6264 3.3457 1.1364 34 1 3.7722 3.4494 -0.6345 35 1 6.0130 2.0488 0.3620 36 1 4.4279 5.2869 0.4100 37 1 5.6216 7.4063 0.6418 38 1 6.0616 9.4650 2.4384 39 1 9.3558 5.2588 0.8224 40 1 8.1403 3.1507 0.6006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394453360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = -22.717015 kcal Electronic energy + Delta-G solvation = -17201.571492 eV Core-core repulsion = 14593.020973 eV Total energy + Delta-G solvation = -2608.550520 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.85409 -38.39978 -36.44426 -34.78453 -32.20884 -31.35237 -30.35947 -28.61765 -26.50936 -25.41718 -23.50717 -22.48323 -21.52620 -20.75987 -19.15355 -17.76851 -16.84352 -16.53927 -16.35359 -15.70341 -15.49005 -15.01685 -14.64581 -14.35380 -14.19452 -13.91461 -13.72807 -13.56740 -13.12937 -12.87694 -12.75230 -12.71917 -12.54816 -12.45667 -12.28516 -11.92825 -11.58553 -11.49548 -11.35474 -11.29047 -11.17022 -11.03385 -10.27006 -9.41261 -8.54941 -8.16159 -6.00627 1.09926 1.17925 1.40276 1.54802 1.58138 2.27744 2.84049 2.91348 3.84620 3.85105 3.96181 4.06333 4.33737 4.42367 4.43542 4.51363 4.60528 4.63718 4.72907 4.77791 4.90506 4.98800 5.07411 5.14171 5.15549 5.18004 5.22301 5.24931 5.28390 5.32176 5.46068 5.55926 5.57446 5.69136 5.80527 5.96557 6.18987 6.39016 6.67283 6.87361 7.08476 7.15829 7.33540 8.48703 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041589 B = 0.003770 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.086446 B = 7425.543597 C = 7894.316684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.087 4.087 4 H 0.066 0.934 5 C -0.151 4.151 6 C -0.112 4.112 7 C 0.134 3.866 8 N -0.753 5.753 9 C 0.109 3.891 10 C -0.176 4.176 11 C -0.144 4.144 12 C 0.034 3.966 13 C -0.505 4.505 14 H 0.068 0.932 15 C 0.030 3.970 16 N -0.842 5.842 17 Si 0.978 3.022 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.268 1.268 21 C -0.196 4.196 22 C -0.166 4.166 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.397 0.603 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.282 0.718 39 H 0.098 0.902 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.856 -13.197 -4.023 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.106 4.106 4 H 0.084 0.916 5 C -0.209 4.209 6 C -0.150 4.150 7 C 0.010 3.990 8 N -0.389 5.389 9 C 0.009 3.991 10 C -0.198 4.198 11 C -0.164 4.164 12 C 0.031 3.969 13 C -0.536 4.536 14 H 0.086 0.914 15 C -0.181 4.181 16 N -0.470 5.470 17 Si 0.799 3.201 18 H -0.184 1.184 19 H -0.191 1.191 20 H -0.193 1.193 21 C -0.216 4.216 22 C -0.188 4.188 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.231 0.769 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.218 -13.010 -3.903 16.998 hybrid contribution 0.515 0.785 0.148 0.950 sum -9.704 -12.225 -3.755 16.054 Atomic orbital electron populations 1.21825 0.95402 1.01941 1.01957 1.21538 0.96309 0.95207 1.02241 1.21083 0.93827 0.97161 0.98552 0.91566 1.21946 1.01751 1.00115 0.97040 1.21722 0.96108 0.94464 1.02726 1.21209 0.80567 0.98009 0.99236 1.43966 1.05310 1.04485 1.85096 1.17503 0.90964 0.86427 1.04163 1.20245 0.98039 0.92066 1.09497 1.20861 0.94972 0.96504 1.04065 1.17831 0.92612 0.93152 0.93272 1.19613 0.98850 0.95269 1.39890 0.91375 1.26638 0.94875 1.04697 0.91928 1.69932 1.17780 1.33079 1.26256 0.85234 0.79226 0.76718 0.78902 1.18408 1.19132 1.19326 1.20775 0.98319 0.92493 1.10008 1.20117 0.92283 0.97505 1.08891 0.92979 0.92330 0.92141 0.91611 0.91832 0.92393 0.91638 0.93597 0.90927 0.91103 0.94815 0.93842 0.76897 0.88024 0.88331 0.90779 0.88376 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 71.98 0.70 -1.35 16 2 C -0.12 -1.70 5.40 30.60 0.17 -1.53 16 3 C -0.09 -1.57 2.39 -10.79 -0.03 -1.60 16 4 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.15 -2.74 8.70 71.98 0.63 -2.11 16 6 C -0.11 -2.32 4.80 30.59 0.15 -2.17 16 7 C 0.13 3.87 4.65 86.38 0.40 4.27 16 8 N -0.75 -25.44 5.70 -339.00 -1.93 -27.37 16 9 C 0.11 4.78 6.67 38.67 0.26 5.04 16 10 C -0.18 -8.57 9.23 22.15 0.20 -8.37 16 11 C -0.14 -7.99 8.64 22.47 0.19 -7.79 16 12 C 0.03 1.95 5.57 -21.27 -0.12 1.83 16 13 C -0.50 -28.89 9.03 23.38 0.21 -28.68 16 14 H 0.07 3.78 7.91 -2.91 -0.02 3.76 16 15 C 0.03 1.63 5.13 85.22 0.44 2.06 16 16 N -0.84 -46.78 10.96 21.82 0.24 -46.54 16 17 Si 0.98 40.69 29.60 68.60 2.03 42.72 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 21 C -0.20 -10.02 9.74 22.47 0.22 -9.80 16 22 C -0.17 -7.44 9.82 22.15 0.22 -7.22 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.76 6.56 -2.39 -0.02 0.74 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.04 6.56 -2.39 -0.02 1.02 16 30 H 0.04 0.96 6.57 -2.39 -0.02 0.95 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.03 1.06 7.94 -2.39 -0.02 1.04 16 34 H 0.04 1.32 6.34 -2.39 -0.02 1.31 16 35 H 0.40 11.41 8.47 -92.70 -0.79 10.62 16 36 H 0.10 4.52 6.68 -2.91 -0.02 4.50 16 37 H 0.10 5.75 6.16 -2.91 -0.02 5.73 16 38 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 39 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.20 319.75 4.19 -58.01 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.22 Total: 30.59 kcal Atomic # 6 Polarization: -61.05 SS G_CDS: 3.63 Total: -57.41 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -1.69 Total: -73.91 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -62.20 4.19 -58.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394453360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.295 kcal (2) G-P(sol) polarization free energy of solvation -62.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds