Wall clock time and date at job start Mon Mar 30 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 C 1.53000 * 109.47196 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46856 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46794 * 180.02562 * 5 4 3 7 7 C 1.46900 * 110.99871 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47235 * 179.97438 * 7 6 5 9 9 C 1.38632 * 119.74940 * 269.73068 * 8 7 6 10 10 C 1.37619 * 120.24819 * 179.71939 * 9 8 7 11 11 C 1.40712 * 119.74408 * 0.57016 * 10 9 8 12 12 C 1.41390 * 120.24777 * 179.68126 * 11 10 9 13 13 H 1.07997 * 120.00422 * 155.30839 * 12 11 10 14 14 C 1.39947 * 119.99949 * 335.31220 * 12 11 10 15 15 N 1.30832 * 120.00061 * 342.23165 * 14 12 11 16 16 Si 1.86795 * 120.00468 * 162.22997 * 14 12 11 17 17 H 1.48504 * 109.47356 * 94.66314 * 16 14 12 18 18 H 1.48498 * 109.47416 * 214.66490 * 16 14 12 19 19 H 1.48508 * 109.47077 * 334.66670 * 16 14 12 20 20 C 1.40718 * 119.51250 * 359.70638 * 11 10 9 21 21 C 1.37620 * 119.74283 * 359.97438 * 20 11 10 22 22 H 1.09003 * 109.46951 * 299.99813 * 1 2 3 23 23 H 1.08997 * 109.46917 * 60.00146 * 1 2 3 24 24 H 1.09000 * 109.47090 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47215 * 239.99867 * 2 1 3 26 26 H 1.08999 * 109.47427 * 119.99828 * 2 1 3 27 27 H 1.09000 * 109.47383 * 59.99863 * 3 2 1 28 28 H 1.08999 * 109.46792 * 300.00217 * 3 2 1 29 29 H 1.09003 * 109.46951 * 60.00187 * 4 3 2 30 30 H 1.08997 * 109.46917 * 299.99854 * 4 3 2 31 31 H 1.09000 * 109.47573 * 59.99954 * 5 4 3 32 32 H 1.09006 * 109.47348 * 299.99579 * 5 4 3 33 33 H 1.00896 * 111.00516 * 56.04424 * 6 5 4 34 34 H 1.09000 * 109.47523 * 299.99817 * 7 6 5 35 35 H 1.09007 * 109.47120 * 59.99919 * 7 6 5 36 36 H 1.08002 * 119.87811 * 359.97438 * 9 8 7 37 37 H 1.08000 * 120.12824 * 180.27281 * 10 9 8 38 38 H 0.96995 * 120.00182 * 180.02562 * 15 14 12 39 39 H 1.07997 * 120.13055 * 179.97438 * 20 11 10 40 40 H 1.07996 * 119.87342 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 7 5.5490 2.8850 0.0013 7 6 6.0754 4.2564 0.0013 8 6 7.5819 4.2163 0.0019 9 6 8.2692 4.2038 1.2058 10 6 9.6447 4.1614 1.2184 11 6 10.3537 4.1428 0.0031 12 6 11.7672 4.1060 0.0036 13 1 12.2972 3.7013 -0.8458 14 6 12.4794 4.5940 1.1050 15 7 11.8921 5.3858 1.9652 16 14 14.2686 4.1150 1.3472 17 1 15.1448 5.1591 0.7578 18 1 14.5554 3.9897 2.7988 19 1 14.5280 2.8152 0.6773 20 6 9.6457 4.1616 -1.2128 21 6 8.2700 4.1973 -1.2014 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9286 -0.8892 30 1 3.9329 0.9289 0.8909 31 1 3.7163 3.3986 0.8912 32 1 3.7170 3.3992 -0.8888 33 1 5.9106 2.3592 -0.7802 34 1 5.7260 4.7798 -0.8887 35 1 5.7259 4.7798 0.8913 36 1 7.7231 4.2233 2.1374 37 1 10.1780 4.1473 2.1574 38 1 12.3859 5.7243 2.7284 39 1 10.1798 4.1480 -2.1514 40 1 7.7246 4.2114 -2.1334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398972349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:11 Heat of formation + Delta-G solvation = -17.219624 kcal Electronic energy + Delta-G solvation = -16762.714821 eV Core-core repulsion = 14154.402686 eV Total energy + Delta-G solvation = -2608.312135 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -37.84152 -36.74096 -34.99301 -33.55319 -31.33484 -29.58791 -29.16428 -26.71944 -24.81611 -22.84653 -21.49003 -21.09716 -20.91022 -19.76416 -17.26663 -16.11762 -15.35227 -15.25785 -14.62239 -14.43494 -13.87706 -13.69252 -13.59876 -13.21620 -12.99548 -12.55933 -12.25214 -11.90728 -11.79444 -11.55611 -11.45210 -11.22284 -11.07869 -11.00078 -10.95583 -10.73419 -10.57408 -10.41954 -10.27618 -9.55736 -9.34023 -9.10249 -8.01036 -7.40613 -7.27206 -6.73711 -4.32057 2.77028 3.08201 3.11336 3.12495 3.20680 3.95014 4.40601 4.67201 4.77007 4.89331 5.03015 5.14967 5.30388 5.49273 5.53202 5.62686 5.71092 5.77041 5.80803 5.87098 5.89304 5.95975 5.99532 6.06771 6.26500 6.27401 6.34226 6.40602 6.49189 6.99075 7.10042 7.33044 7.39383 7.46179 7.64901 7.76784 7.93326 8.08982 8.18843 8.33481 8.67939 8.92608 9.01369 10.21007 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.050352 B = 0.003142 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.955659 B = 8908.222021 C = 8999.878835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.118 4.118 5 C 0.057 3.943 6 N -0.686 5.686 7 C 0.124 3.876 8 C -0.212 4.212 9 C -0.079 4.079 10 C -0.167 4.167 11 C 0.112 3.888 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.793 5.793 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.261 1.261 20 C -0.228 4.228 21 C -0.086 4.086 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.338 0.662 34 H 0.017 0.983 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.280 0.720 39 H 0.090 0.910 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.034 -5.751 -1.878 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.073 4.073 6 N -0.317 5.317 7 C -0.004 4.004 8 C -0.214 4.214 9 C -0.098 4.098 10 C -0.187 4.187 11 C 0.110 3.890 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.419 5.419 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.247 4.247 21 C -0.105 4.105 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.156 0.844 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.947 -5.663 -0.975 15.084 hybrid contribution 0.653 0.219 -0.760 1.026 sum -13.294 -5.444 -1.735 14.470 Atomic orbital electron populations 1.21783 0.96132 1.01399 1.01698 1.21532 0.95569 0.97099 1.02078 1.21580 0.95588 0.96598 1.01869 1.21583 0.94537 0.96865 1.02599 1.21967 0.89149 0.96314 0.99832 1.60636 1.05501 1.15450 1.50118 1.20553 0.93154 0.87919 0.98735 1.18907 0.92199 1.16785 0.93519 1.20499 0.94393 0.99590 0.95313 1.21311 0.92304 1.06378 0.98680 1.17624 0.93226 0.87306 0.90893 1.19583 0.91521 1.36049 1.02150 0.90526 1.25914 1.00791 0.92636 0.94847 1.69834 1.38569 1.22305 1.11164 0.86334 0.82050 0.80170 0.78359 1.19631 1.20042 1.18443 1.20932 0.93176 1.13646 0.96972 1.20354 0.94271 1.00702 0.95139 0.92814 0.92883 0.92943 0.92119 0.91963 0.92033 0.92298 0.92283 0.91122 0.91557 0.96140 0.84377 0.96472 0.92039 0.89489 0.86543 0.90927 0.89166 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 4 C -0.12 -1.32 5.47 -26.73 -0.15 -1.46 16 5 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 6 N -0.69 -11.21 6.49 -115.05 -0.75 -11.95 16 7 C 0.12 2.26 5.80 -4.97 -0.03 2.23 16 8 C -0.21 -4.69 5.42 -104.33 -0.56 -5.26 16 9 C -0.08 -1.89 9.67 -39.66 -0.38 -2.28 16 10 C -0.17 -4.44 8.70 -38.87 -0.34 -4.78 16 11 C 0.11 3.04 5.57 -106.83 -0.60 2.44 16 12 C -0.46 -12.48 9.05 -37.74 -0.34 -12.83 16 13 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 14 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 15 N -0.79 -20.78 10.97 55.55 0.61 -20.18 16 16 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 20 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 21 C -0.09 -1.94 9.67 -39.66 -0.38 -2.32 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.34 5.47 8.72 -39.29 -0.34 5.13 16 34 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 37 H 0.12 3.19 6.18 -52.49 -0.32 2.86 16 38 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 39 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.08 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -27.16 330.40 -10.37 -37.52 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.97 Total: 6.77 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: -3.20 Total: -30.96 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: -0.14 Total: -32.13 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.16 -10.37 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398972349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.305 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds