Wall clock time and date at job start Mon Mar 30 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 C 1.53000 * 109.47196 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46856 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46794 * 180.02562 * 5 4 3 7 7 C 1.46900 * 110.99871 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47235 * 179.97438 * 7 6 5 9 9 C 1.38632 * 119.74940 * 269.73068 * 8 7 6 10 10 C 1.37619 * 120.24819 * 179.71939 * 9 8 7 11 11 C 1.40712 * 119.74408 * 0.57016 * 10 9 8 12 12 C 1.41390 * 120.24777 * 179.68126 * 11 10 9 13 13 H 1.07997 * 120.00422 * 155.30839 * 12 11 10 14 14 C 1.39947 * 119.99949 * 335.31220 * 12 11 10 15 15 N 1.30832 * 120.00061 * 342.23165 * 14 12 11 16 16 Si 1.86795 * 120.00468 * 162.22997 * 14 12 11 17 17 H 1.48504 * 109.47356 * 94.66314 * 16 14 12 18 18 H 1.48498 * 109.47416 * 214.66490 * 16 14 12 19 19 H 1.48508 * 109.47077 * 334.66670 * 16 14 12 20 20 C 1.40718 * 119.51250 * 359.70638 * 11 10 9 21 21 C 1.37620 * 119.74283 * 359.97438 * 20 11 10 22 22 H 1.09003 * 109.46951 * 299.99813 * 1 2 3 23 23 H 1.08997 * 109.46917 * 60.00146 * 1 2 3 24 24 H 1.09000 * 109.47090 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47215 * 239.99867 * 2 1 3 26 26 H 1.08999 * 109.47427 * 119.99828 * 2 1 3 27 27 H 1.09000 * 109.47383 * 59.99863 * 3 2 1 28 28 H 1.08999 * 109.46792 * 300.00217 * 3 2 1 29 29 H 1.09003 * 109.46951 * 60.00187 * 4 3 2 30 30 H 1.08997 * 109.46917 * 299.99854 * 4 3 2 31 31 H 1.09000 * 109.47573 * 59.99954 * 5 4 3 32 32 H 1.09006 * 109.47348 * 299.99579 * 5 4 3 33 33 H 1.00896 * 111.00516 * 56.04424 * 6 5 4 34 34 H 1.09000 * 109.47523 * 299.99817 * 7 6 5 35 35 H 1.09007 * 109.47120 * 59.99919 * 7 6 5 36 36 H 1.08002 * 119.87811 * 359.97438 * 9 8 7 37 37 H 1.08000 * 120.12824 * 180.27281 * 10 9 8 38 38 H 0.96995 * 120.00182 * 180.02562 * 15 14 12 39 39 H 1.07997 * 120.13055 * 179.97438 * 20 11 10 40 40 H 1.07996 * 119.87342 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 7 5.5490 2.8850 0.0013 7 6 6.0754 4.2564 0.0013 8 6 7.5819 4.2163 0.0019 9 6 8.2692 4.2038 1.2058 10 6 9.6447 4.1614 1.2184 11 6 10.3537 4.1428 0.0031 12 6 11.7672 4.1060 0.0036 13 1 12.2972 3.7013 -0.8458 14 6 12.4794 4.5940 1.1050 15 7 11.8921 5.3858 1.9652 16 14 14.2686 4.1150 1.3472 17 1 15.1448 5.1591 0.7578 18 1 14.5554 3.9897 2.7988 19 1 14.5280 2.8152 0.6773 20 6 9.6457 4.1616 -1.2128 21 6 8.2700 4.1973 -1.2014 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9286 -0.8892 30 1 3.9329 0.9289 0.8909 31 1 3.7163 3.3986 0.8912 32 1 3.7170 3.3992 -0.8888 33 1 5.9106 2.3592 -0.7802 34 1 5.7260 4.7798 -0.8887 35 1 5.7259 4.7798 0.8913 36 1 7.7231 4.2233 2.1374 37 1 10.1780 4.1473 2.1574 38 1 12.3859 5.7243 2.7284 39 1 10.1798 4.1480 -2.1514 40 1 7.7246 4.2114 -2.1334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398972349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:11 Heat of formation + Delta-G solvation = -30.650703 kcal Electronic energy + Delta-G solvation = -16763.297237 eV Core-core repulsion = 14154.402686 eV Total energy + Delta-G solvation = -2608.894550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60785 -37.86904 -36.21415 -35.21031 -32.65899 -31.23034 -30.86130 -28.22165 -26.09115 -24.33514 -22.85363 -22.41657 -21.93743 -21.47546 -19.21245 -17.19374 -17.13795 -16.44381 -15.85536 -15.76618 -15.58712 -15.19711 -14.73753 -14.36114 -14.12560 -13.96672 -13.78660 -13.45606 -13.27835 -12.92330 -12.76288 -12.68003 -12.45973 -12.23583 -12.15052 -11.87015 -11.79722 -11.57774 -11.36159 -11.31753 -11.19599 -10.99158 -9.35294 -9.33787 -9.12282 -8.63142 -6.32352 0.95734 1.16025 1.37829 1.48752 1.54428 2.21142 2.70386 3.38430 3.80924 3.97370 4.07226 4.25765 4.29057 4.32737 4.39082 4.51276 4.58465 4.65545 4.67979 4.76770 4.83949 4.93249 4.96913 5.05177 5.07486 5.17152 5.17220 5.24382 5.35745 5.39497 5.47162 5.48012 5.53193 5.72479 5.95370 6.11354 6.18945 6.30087 6.40202 6.55441 6.72255 6.95315 7.05552 8.34221 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.050352 B = 0.003142 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.955659 B = 8908.222021 C = 8999.878835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.112 4.112 5 C 0.059 3.941 6 N -0.697 5.697 7 C 0.131 3.869 8 C -0.201 4.201 9 C -0.087 4.087 10 C -0.192 4.192 11 C 0.078 3.922 12 C -0.502 4.502 13 H 0.074 0.926 14 C 0.033 3.967 15 N -0.827 5.827 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.266 1.266 19 H -0.259 1.259 20 C -0.244 4.244 21 C -0.085 4.085 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.340 0.660 34 H 0.033 0.967 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.288 0.712 39 H 0.096 0.904 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.323 -6.147 -2.406 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.150 4.150 5 C -0.070 4.070 6 N -0.328 5.328 7 C 0.003 3.997 8 C -0.202 4.202 9 C -0.106 4.106 10 C -0.211 4.211 11 C 0.076 3.924 12 C -0.532 4.532 13 H 0.093 0.907 14 C -0.181 4.181 15 N -0.453 5.453 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.190 1.190 19 H -0.183 1.183 20 C -0.263 4.263 21 C -0.104 4.104 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.157 0.843 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.262 -6.060 -1.510 16.491 hybrid contribution 0.882 0.344 -0.631 1.138 sum -14.380 -5.716 -2.140 15.622 Atomic orbital electron populations 1.21774 0.95245 1.01942 1.01960 1.21529 0.96360 0.96454 1.01976 1.21536 0.94048 0.97295 1.02236 1.21524 0.95834 0.95483 1.02138 1.22021 0.86954 0.97661 1.00329 1.60546 1.07643 1.14171 1.50455 1.20448 0.90196 0.89324 0.99752 1.19345 0.94629 1.13716 0.92522 1.20732 0.93649 0.99284 0.96916 1.21273 0.93479 1.08453 0.97943 1.17980 0.93987 0.88533 0.91906 1.19831 0.92060 1.37930 1.03385 0.90748 1.26785 1.05414 0.91915 0.94014 1.69887 1.40589 1.23025 1.11792 0.85199 0.76107 0.79793 0.78626 1.18634 1.19019 1.18300 1.21164 0.94512 1.14051 0.96588 1.20690 0.93532 0.99331 0.96802 0.92648 0.92534 0.92319 0.92080 0.92274 0.91853 0.91720 0.92154 0.92196 0.91469 0.95074 0.84250 0.94887 0.91622 0.88172 0.88423 0.90189 0.88559 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.13 -1.87 5.93 30.60 0.18 -1.69 16 3 C -0.11 -1.85 5.21 30.60 0.16 -1.69 16 4 C -0.11 -2.27 5.47 30.59 0.17 -2.10 16 5 C 0.06 1.40 5.69 86.30 0.49 1.89 16 6 N -0.70 -21.15 6.49 -517.90 -3.36 -24.51 16 7 C 0.13 4.42 5.80 85.56 0.50 4.92 16 8 C -0.20 -8.59 5.42 -19.67 -0.11 -8.70 16 9 C -0.09 -4.18 9.67 22.22 0.21 -3.97 16 10 C -0.19 -10.50 8.70 22.73 0.20 -10.31 16 11 C 0.08 4.37 5.57 -21.29 -0.12 4.26 16 12 C -0.50 -27.98 9.05 23.46 0.21 -27.77 16 13 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 14 C 0.03 1.72 5.14 85.26 0.44 2.16 16 15 N -0.83 -44.53 10.97 21.83 0.24 -44.29 16 16 Si 0.98 39.14 29.59 68.60 2.03 41.17 16 17 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 18 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 20 C -0.24 -12.25 9.80 22.73 0.22 -12.02 16 21 C -0.08 -3.72 9.67 22.22 0.21 -3.51 16 22 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.34 10.19 8.72 -89.70 -0.78 9.41 16 34 H 0.03 1.03 8.08 -2.39 -0.02 1.01 16 35 H 0.07 2.18 8.08 -2.38 -0.02 2.16 16 36 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 37 H 0.10 5.61 6.18 -2.91 -0.02 5.59 16 38 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 39 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 40 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -59.04 330.40 2.60 -56.44 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.21 Total: 30.92 kcal Atomic # 6 Polarization: -63.22 SS G_CDS: 3.48 Total: -59.73 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -3.12 Total: -68.80 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -59.04 2.60 -56.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398972349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.794 kcal (2) G-P(sol) polarization free energy of solvation -59.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds