Wall clock time and date at job start Mon Mar 30 2020 06:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47208 * 2 1 4 4 C 1.53003 * 109.47268 * 239.99786 * 2 1 3 5 5 H 1.08994 * 109.47128 * 60.00186 * 4 2 1 6 6 C 1.52998 * 109.46904 * 180.02562 * 4 2 1 7 7 N 1.46901 * 109.46990 * 300.00008 * 4 2 1 8 8 C 1.46898 * 110.99880 * 155.00115 * 7 4 2 9 9 C 1.50706 * 109.46960 * 179.97438 * 8 7 4 10 10 C 1.38627 * 119.74957 * 269.72613 * 9 8 7 11 11 C 1.37626 * 120.24868 * 179.72089 * 10 9 8 12 12 C 1.40710 * 119.74043 * 0.57233 * 11 10 9 13 13 C 1.41402 * 120.24221 * 179.67838 * 12 11 10 14 14 H 1.07993 * 119.99864 * 155.31398 * 13 12 11 15 15 C 1.39937 * 119.99945 * 335.31415 * 13 12 11 16 16 N 1.30827 * 120.00552 * 342.22823 * 15 13 12 17 17 Si 1.86797 * 120.00063 * 162.23109 * 15 13 12 18 18 H 1.48506 * 109.47181 * 94.66321 * 17 15 13 19 19 H 1.48499 * 109.47524 * 214.66332 * 17 15 13 20 20 H 1.48503 * 109.47354 * 334.66303 * 17 15 13 21 21 C 1.40713 * 119.51560 * 359.70249 * 12 11 10 22 22 C 1.37623 * 119.74359 * 0.02562 * 21 12 11 23 23 H 1.09000 * 109.47134 * 300.00354 * 1 2 3 24 24 H 1.08998 * 109.47108 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46726 * 60.00585 * 1 2 3 26 26 H 1.09007 * 109.47103 * 119.99535 * 2 1 3 27 27 H 1.08990 * 109.46870 * 59.99634 * 3 2 1 28 28 H 1.08994 * 109.46897 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46709 * 299.99777 * 3 2 1 30 30 H 1.08995 * 109.47331 * 299.99731 * 6 4 2 31 31 H 1.09001 * 109.47519 * 60.00235 * 6 4 2 32 32 H 1.09003 * 109.47215 * 179.97438 * 6 4 2 33 33 H 1.00906 * 110.99866 * 278.95421 * 7 4 2 34 34 H 1.08995 * 109.47140 * 299.99599 * 8 7 4 35 35 H 1.08996 * 109.47184 * 60.00048 * 8 7 4 36 36 H 1.08002 * 119.87422 * 359.97438 * 10 9 8 37 37 H 1.08003 * 120.12801 * 180.27517 * 11 10 9 38 38 H 0.96995 * 120.00380 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.13194 * 179.97438 * 21 12 11 40 40 H 1.08004 * 119.87609 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6768 -0.2075 -2.1392 6 6 3.5700 -0.7218 -1.2488 7 7 1.5504 -2.1063 -1.2492 8 6 1.4876 -2.6425 -2.6153 9 6 0.9828 -4.0619 -2.5751 10 6 1.8833 -5.1093 -2.4578 11 6 1.4331 -6.4091 -2.4143 12 6 0.0538 -6.6734 -2.5017 13 6 -0.4198 -8.0052 -2.4650 14 1 -1.4276 -8.2110 -2.1359 15 6 0.4173 -9.0566 -2.8550 16 7 1.4860 -8.8116 -3.5688 17 14 0.0089 -10.8099 -2.3566 18 1 -0.7509 -11.4706 -3.4482 19 1 1.2664 -11.5588 -2.1053 20 1 -0.8135 -10.7943 -1.1202 21 6 -0.8506 -5.6027 -2.6264 22 6 -0.3783 -4.3106 -2.6621 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5138 0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 3.9337 0.3057 -1.2487 31 1 3.9330 -1.2359 -0.3588 32 1 3.9335 -1.2361 -2.1386 33 1 2.1205 -2.6914 -0.6569 34 1 0.8113 -2.0328 -3.2143 35 1 2.4830 -2.6238 -3.0591 36 1 2.9419 -4.9042 -2.3961 37 1 2.1362 -7.2234 -2.3183 38 1 2.0664 -9.5403 -3.8389 39 1 -1.9113 -5.7942 -2.6946 40 1 -1.0706 -3.4872 -2.7581 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399002447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:11 Heat of formation + Delta-G solvation = -8.493664 kcal Electronic energy + Delta-G solvation = -17520.071946 eV Core-core repulsion = 14912.138197 eV Total energy + Delta-G solvation = -2607.933749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.25652 -37.24487 -34.28855 -33.08109 -30.46280 -29.26524 -28.80685 -27.00126 -25.77292 -23.51232 -22.24520 -20.96449 -20.08221 -19.47754 -17.25902 -15.50946 -15.29182 -15.01166 -14.50814 -14.12671 -13.99825 -13.64000 -13.37166 -12.87597 -12.53469 -12.32061 -12.17166 -12.04710 -11.89966 -11.68113 -11.40678 -11.27762 -11.03631 -10.98948 -10.75212 -10.67594 -10.51987 -10.42856 -10.19122 -9.50857 -9.36268 -9.09745 -7.93957 -7.40933 -7.25481 -6.74081 -4.32055 2.76815 3.07825 3.11327 3.12874 3.21016 3.94811 4.46821 4.76378 4.83260 5.05625 5.30518 5.35352 5.50051 5.52796 5.73285 5.73726 5.81286 5.87346 5.94928 5.97523 5.99813 6.06206 6.17011 6.29559 6.36637 6.42079 6.46125 6.47082 6.63464 6.97783 7.10375 7.31282 7.41477 7.51150 7.65210 7.82514 7.93951 8.08859 8.18515 8.34037 8.67272 8.92820 9.01352 10.20663 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045753 B = 0.004111 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.830610 B = 6809.968340 C = 7057.166547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.149 4.149 4 C 0.085 3.915 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.677 5.677 8 C 0.125 3.875 9 C -0.212 4.212 10 C -0.096 4.096 11 C -0.166 4.166 12 C 0.112 3.888 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.795 5.795 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.260 1.260 21 C -0.228 4.228 22 C -0.069 4.069 23 H 0.041 0.959 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.339 0.661 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.090 0.910 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 12.009 4.227 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.206 4.206 4 C -0.026 4.026 5 H 0.089 0.911 6 C -0.243 4.243 7 N -0.307 5.307 8 C -0.002 4.002 9 C -0.213 4.213 10 C -0.114 4.114 11 C -0.185 4.185 12 C 0.110 3.890 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.420 5.420 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.248 4.248 22 C -0.088 4.088 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.100 0.900 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.297 12.069 4.098 12.951 hybrid contribution 0.918 -1.002 -0.125 1.364 sum 3.215 11.068 3.974 12.191 Atomic orbital electron populations 1.21693 0.94718 1.02992 1.00033 1.21062 0.96545 0.94754 0.97923 1.21914 1.00791 0.96517 1.01415 1.21613 0.91889 0.91085 0.97987 0.91059 1.22573 0.98042 1.01889 1.01792 1.60719 1.56774 1.01464 1.11767 1.20558 0.97503 0.93727 0.88459 1.18910 0.93566 0.92254 1.16606 1.20517 0.96362 0.93446 1.01125 1.21264 0.96354 0.94710 1.06198 1.17615 0.91619 0.92559 0.87223 1.19594 0.99726 0.90841 1.39205 0.90514 1.25900 0.94108 1.01611 0.92487 1.69832 1.12189 1.34651 1.25349 0.86344 0.78960 0.81532 0.80141 1.19619 1.20081 1.18425 1.20979 0.97905 0.92738 1.13171 1.20331 0.93891 0.95387 0.99187 0.94012 0.90842 0.93611 0.91585 0.92959 0.92767 0.92955 0.92278 0.92633 0.92855 0.84263 0.92253 0.96408 0.90005 0.86647 0.90976 0.89157 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.04 37.16 0.34 -1.33 16 2 C -0.08 -0.96 2.69 -90.62 -0.24 -1.20 16 3 C -0.15 -1.41 8.84 37.16 0.33 -1.08 16 4 C 0.08 1.07 2.17 -67.71 -0.15 0.93 16 5 H 0.07 0.93 7.80 -51.93 -0.41 0.53 16 6 C -0.18 -2.10 8.81 37.16 0.33 -1.77 16 7 N -0.68 -10.53 5.47 -107.99 -0.59 -11.12 16 8 C 0.13 2.21 5.60 -4.97 -0.03 2.18 16 9 C -0.21 -4.59 5.41 -104.33 -0.56 -5.16 16 10 C -0.10 -2.22 9.67 -39.66 -0.38 -2.60 16 11 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 12 C 0.11 3.03 5.57 -106.83 -0.60 2.44 16 13 C -0.46 -12.47 9.05 -37.74 -0.34 -12.82 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 15 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 16 N -0.79 -20.72 10.97 55.55 0.61 -20.11 16 17 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 C -0.23 -5.71 9.80 -38.87 -0.38 -6.09 16 22 C -0.07 -1.57 9.67 -39.66 -0.38 -1.96 16 23 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 1.05 7.60 -51.93 -0.39 0.65 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.48 6.43 -51.93 -0.33 0.15 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 31 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.05 0.65 7.45 -51.93 -0.39 0.26 16 33 H 0.34 5.41 8.46 -39.29 -0.33 5.07 16 34 H 0.06 1.02 7.99 -51.93 -0.42 0.61 16 35 H 0.02 0.31 7.37 -51.93 -0.38 -0.08 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.12 3.12 6.18 -52.48 -0.32 2.80 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -26.58 322.44 -9.32 -35.90 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.66 Total: 8.01 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: -2.50 Total: -31.29 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.02 Total: -31.23 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.58 -9.32 -35.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399002447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.407 kcal (2) G-P(sol) polarization free energy of solvation -26.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds