Wall clock time and date at job start Mon Mar 30 2020 06:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47208 * 2 1 4 4 C 1.53003 * 109.47268 * 239.99786 * 2 1 3 5 5 H 1.08994 * 109.47128 * 60.00186 * 4 2 1 6 6 C 1.52998 * 109.46904 * 180.02562 * 4 2 1 7 7 N 1.46901 * 109.46990 * 300.00008 * 4 2 1 8 8 C 1.46898 * 110.99880 * 155.00115 * 7 4 2 9 9 C 1.50706 * 109.46960 * 179.97438 * 8 7 4 10 10 C 1.38627 * 119.74957 * 269.72613 * 9 8 7 11 11 C 1.37626 * 120.24868 * 179.72089 * 10 9 8 12 12 C 1.40710 * 119.74043 * 0.57233 * 11 10 9 13 13 C 1.41402 * 120.24221 * 179.67838 * 12 11 10 14 14 H 1.07993 * 119.99864 * 155.31398 * 13 12 11 15 15 C 1.39937 * 119.99945 * 335.31415 * 13 12 11 16 16 N 1.30827 * 120.00552 * 342.22823 * 15 13 12 17 17 Si 1.86797 * 120.00063 * 162.23109 * 15 13 12 18 18 H 1.48506 * 109.47181 * 94.66321 * 17 15 13 19 19 H 1.48499 * 109.47524 * 214.66332 * 17 15 13 20 20 H 1.48503 * 109.47354 * 334.66303 * 17 15 13 21 21 C 1.40713 * 119.51560 * 359.70249 * 12 11 10 22 22 C 1.37623 * 119.74359 * 0.02562 * 21 12 11 23 23 H 1.09000 * 109.47134 * 300.00354 * 1 2 3 24 24 H 1.08998 * 109.47108 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46726 * 60.00585 * 1 2 3 26 26 H 1.09007 * 109.47103 * 119.99535 * 2 1 3 27 27 H 1.08990 * 109.46870 * 59.99634 * 3 2 1 28 28 H 1.08994 * 109.46897 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46709 * 299.99777 * 3 2 1 30 30 H 1.08995 * 109.47331 * 299.99731 * 6 4 2 31 31 H 1.09001 * 109.47519 * 60.00235 * 6 4 2 32 32 H 1.09003 * 109.47215 * 179.97438 * 6 4 2 33 33 H 1.00906 * 110.99866 * 278.95421 * 7 4 2 34 34 H 1.08995 * 109.47140 * 299.99599 * 8 7 4 35 35 H 1.08996 * 109.47184 * 60.00048 * 8 7 4 36 36 H 1.08002 * 119.87422 * 359.97438 * 10 9 8 37 37 H 1.08003 * 120.12801 * 180.27517 * 11 10 9 38 38 H 0.96995 * 120.00380 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.13194 * 179.97438 * 21 12 11 40 40 H 1.08004 * 119.87609 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6768 -0.2075 -2.1392 6 6 3.5700 -0.7218 -1.2488 7 7 1.5504 -2.1063 -1.2492 8 6 1.4876 -2.6425 -2.6153 9 6 0.9828 -4.0619 -2.5751 10 6 1.8833 -5.1093 -2.4578 11 6 1.4331 -6.4091 -2.4143 12 6 0.0538 -6.6734 -2.5017 13 6 -0.4198 -8.0052 -2.4650 14 1 -1.4276 -8.2110 -2.1359 15 6 0.4173 -9.0566 -2.8550 16 7 1.4860 -8.8116 -3.5688 17 14 0.0089 -10.8099 -2.3566 18 1 -0.7509 -11.4706 -3.4482 19 1 1.2664 -11.5588 -2.1053 20 1 -0.8135 -10.7943 -1.1202 21 6 -0.8506 -5.6027 -2.6264 22 6 -0.3783 -4.3106 -2.6621 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5138 0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 3.9337 0.3057 -1.2487 31 1 3.9330 -1.2359 -0.3588 32 1 3.9335 -1.2361 -2.1386 33 1 2.1205 -2.6914 -0.6569 34 1 0.8113 -2.0328 -3.2143 35 1 2.4830 -2.6238 -3.0591 36 1 2.9419 -4.9042 -2.3961 37 1 2.1362 -7.2234 -2.3183 38 1 2.0664 -9.5403 -3.8389 39 1 -1.9113 -5.7942 -2.6946 40 1 -1.0706 -3.4872 -2.7581 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399002447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:10 Heat of formation + Delta-G solvation = -21.562124 kcal Electronic energy + Delta-G solvation = -17520.638637 eV Core-core repulsion = 14912.138197 eV Total energy + Delta-G solvation = -2608.500440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.73995 -38.68429 -35.93126 -34.54505 -32.00834 -31.13885 -30.11366 -28.19368 -27.14432 -24.99565 -23.42956 -22.86449 -21.68448 -20.65079 -19.20202 -17.23719 -16.57378 -16.29703 -15.87801 -15.65898 -15.21399 -15.03271 -14.96305 -14.25506 -13.90962 -13.78872 -13.60370 -13.35312 -13.07600 -12.92392 -12.88429 -12.68665 -12.61239 -12.36735 -12.20247 -12.08909 -11.65178 -11.59717 -11.43531 -11.26187 -11.14179 -10.98361 -9.37453 -9.23241 -9.06052 -8.62909 -6.31915 0.96359 1.17563 1.37856 1.48678 1.54466 2.21363 2.70942 3.42655 3.82996 3.88291 4.14632 4.28759 4.33626 4.40802 4.48430 4.59062 4.65316 4.67374 4.69073 4.84603 4.90348 4.98423 5.05880 5.07316 5.10408 5.16895 5.18846 5.26618 5.39421 5.42626 5.49951 5.54808 5.65263 5.73282 5.98411 6.12170 6.25104 6.32972 6.42104 6.60458 6.72410 6.96151 7.06258 8.34357 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045753 B = 0.004111 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.830610 B = 6809.968340 C = 7057.166547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 C -0.144 4.144 4 C 0.086 3.914 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.683 5.683 8 C 0.134 3.866 9 C -0.198 4.198 10 C -0.098 4.098 11 C -0.189 4.189 12 C 0.079 3.921 13 C -0.505 4.505 14 H 0.073 0.927 15 C 0.036 3.964 16 N -0.827 5.827 17 Si 0.981 3.019 18 H -0.262 1.262 19 H -0.265 1.265 20 H -0.260 1.260 21 C -0.245 4.245 22 C -0.073 4.073 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.337 0.663 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.287 0.713 39 H 0.093 0.907 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 13.481 4.660 14.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.201 4.201 4 C -0.024 4.024 5 H 0.089 0.911 6 C -0.238 4.238 7 N -0.313 5.313 8 C 0.006 3.994 9 C -0.199 4.199 10 C -0.117 4.117 11 C -0.209 4.209 12 C 0.077 3.923 13 C -0.534 4.534 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.453 5.453 17 Si 0.802 3.198 18 H -0.187 1.187 19 H -0.189 1.189 20 H -0.184 1.184 21 C -0.265 4.265 22 C -0.092 4.092 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.849 13.569 4.530 14.587 hybrid contribution 0.759 -1.276 -0.259 1.507 sum 3.608 12.293 4.271 13.505 Atomic orbital electron populations 1.21657 0.95308 1.01517 1.00729 1.21045 0.95995 0.95994 0.97008 1.21868 1.01320 0.94877 1.02077 1.21681 0.92875 0.89184 0.98670 0.91067 1.22508 0.96796 1.03036 1.01427 1.60645 1.57511 1.02850 1.10270 1.20434 0.97907 0.91141 0.89936 1.19350 0.92992 0.94218 1.13357 1.20765 0.97826 0.92775 1.00333 1.21239 0.95965 0.95565 1.08125 1.17953 0.92462 0.93436 0.88435 1.19833 1.00309 0.91941 1.41354 0.90928 1.26741 0.93697 1.05696 0.91753 1.69880 1.13148 1.36322 1.25988 0.85216 0.79031 0.75872 0.79711 1.18708 1.18939 1.18360 1.21180 0.98015 0.93515 1.13766 1.20633 0.94982 0.95168 0.98387 0.92826 0.93318 0.93463 0.92009 0.92078 0.91886 0.92573 0.90394 0.92557 0.93656 0.84545 0.91403 0.95573 0.87934 0.88391 0.90212 0.88879 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.04 71.98 0.65 -2.37 16 2 C -0.08 -1.67 2.69 -10.79 -0.03 -1.70 16 3 C -0.14 -2.27 8.84 71.98 0.64 -1.64 16 4 C 0.09 1.96 2.17 44.92 0.10 2.06 16 5 H 0.07 1.66 7.80 -2.39 -0.02 1.64 16 6 C -0.18 -3.59 8.81 71.98 0.63 -2.96 16 7 N -0.68 -19.95 5.47 -495.59 -2.71 -22.66 16 8 C 0.13 4.44 5.60 85.56 0.48 4.92 16 9 C -0.20 -8.37 5.41 -19.67 -0.11 -8.48 16 10 C -0.10 -4.56 9.67 22.22 0.21 -4.34 16 11 C -0.19 -10.19 8.70 22.73 0.20 -9.99 16 12 C 0.08 4.43 5.57 -21.29 -0.12 4.31 16 13 C -0.50 -28.17 9.05 23.46 0.21 -27.96 16 14 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 15 C 0.04 1.84 5.14 85.25 0.44 2.28 16 16 N -0.83 -44.25 10.97 21.82 0.24 -44.01 16 17 Si 0.98 39.06 29.59 68.60 2.03 41.09 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 19 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 C -0.25 -12.50 9.80 22.73 0.22 -12.28 16 22 C -0.07 -3.28 9.67 22.22 0.21 -3.07 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 1.33 7.60 -2.39 -0.02 1.31 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.89 6.43 -2.39 -0.02 0.88 16 29 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.08 1.28 6.43 -2.39 -0.02 1.26 16 31 H 0.06 1.12 8.13 -2.39 -0.02 1.11 16 32 H 0.04 0.98 7.45 -2.39 -0.02 0.97 16 33 H 0.34 10.19 8.46 -89.69 -0.76 9.43 16 34 H 0.07 2.16 7.99 -2.39 -0.02 2.14 16 35 H 0.03 0.83 7.37 -2.39 -0.02 0.82 16 36 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.10 5.52 6.18 -2.91 -0.02 5.51 16 38 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 39 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -58.23 322.44 3.54 -54.68 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.24 Total: 32.11 kcal Atomic # 6 Polarization: -64.96 SS G_CDS: 3.74 Total: -61.21 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -2.47 Total: -66.67 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -58.23 3.54 -54.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399002447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.122 kcal (2) G-P(sol) polarization free energy of solvation -58.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds