Wall clock time and date at job start Mon Mar 30 2020 06:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 C 1.53005 * 109.47150 * 240.00184 * 2 1 3 5 5 H 1.09001 * 109.46617 * 59.99980 * 4 2 1 6 6 C 1.52997 * 109.46869 * 300.00079 * 4 2 1 7 7 N 1.46893 * 109.47122 * 179.97438 * 4 2 1 8 8 C 1.46900 * 110.99941 * 204.99664 * 7 4 2 9 9 C 1.50705 * 109.47168 * 180.02562 * 8 7 4 10 10 C 1.38637 * 119.74594 * 269.73190 * 9 8 7 11 11 C 1.37618 * 120.24657 * 179.72328 * 10 9 8 12 12 C 1.40722 * 119.74426 * 0.56678 * 11 10 9 13 13 C 1.41393 * 120.24420 * 179.68325 * 12 11 10 14 14 H 1.07996 * 120.00286 * 24.41306 * 13 12 11 15 15 C 1.39946 * 119.99823 * 204.40773 * 13 12 11 16 16 N 1.30835 * 119.99909 * 17.86390 * 15 13 12 17 17 Si 1.86795 * 120.00047 * 197.85456 * 15 13 12 18 18 H 1.48502 * 109.47273 * 60.00728 * 17 15 13 19 19 H 1.48503 * 109.47137 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47406 * 300.00536 * 17 15 13 21 21 C 1.40723 * 119.50865 * 359.70515 * 12 11 10 22 22 C 1.37613 * 119.74257 * 0.02562 * 21 12 11 23 23 H 1.08997 * 109.47143 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46891 * 299.99974 * 1 2 3 25 25 H 1.09001 * 109.47377 * 59.99370 * 1 2 3 26 26 H 1.09001 * 109.47082 * 120.00169 * 2 1 3 27 27 H 1.09009 * 109.47128 * 60.00171 * 3 2 1 28 28 H 1.09000 * 109.47350 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47420 * 300.00604 * 3 2 1 30 30 H 1.08999 * 109.47063 * 179.97438 * 6 4 2 31 31 H 1.09001 * 109.47192 * 299.99910 * 6 4 2 32 32 H 1.09000 * 109.47350 * 59.99703 * 6 4 2 33 33 H 1.00904 * 110.99988 * 81.04698 * 7 4 2 34 34 H 1.08992 * 109.47284 * 300.00272 * 8 7 4 35 35 H 1.09001 * 109.46567 * 60.00355 * 8 7 4 36 36 H 1.07997 * 119.87847 * 359.97438 * 10 9 8 37 37 H 1.07995 * 120.13106 * 180.27904 * 11 10 9 38 38 H 0.96992 * 119.99723 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.12287 * 179.97438 * 21 12 11 40 40 H 1.08007 * 119.87403 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 1.5300 -2.1637 -1.2493 7 7 3.5089 -0.7207 -1.2496 8 6 4.0351 -0.8403 -2.6159 9 6 5.5416 -0.8368 -2.5761 10 6 6.2294 0.3633 -2.6685 11 6 7.6049 0.3790 -2.6276 12 6 8.3135 -0.8305 -2.5034 13 6 9.7270 -0.8273 -2.4671 14 1 10.2568 0.0560 -2.1424 15 6 10.4394 -1.9688 -2.8517 16 7 9.8526 -2.8975 -3.5623 17 14 12.2280 -2.1664 -2.3507 18 1 12.3305 -2.1619 -0.8692 19 1 12.7511 -3.4517 -2.8795 20 1 13.0245 -1.0425 -2.9054 21 6 7.6049 -2.0431 -2.4162 22 6 6.2293 -2.0343 -2.4536 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.8929 -2.6774 -2.1395 31 1 1.8933 -2.6775 -0.3593 32 1 0.4400 -2.1637 -1.2492 33 1 3.8709 -1.4531 -0.6574 34 1 3.6859 -1.7726 -3.0595 35 1 3.6852 0.0006 -3.2148 36 1 5.6837 1.2898 -2.7689 37 1 8.1387 1.3154 -2.6952 38 1 10.3463 -3.6888 -3.8285 39 1 8.1387 -2.9772 -2.3211 40 1 5.6833 -2.9638 -2.3873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399002448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:13 Heat of formation + Delta-G solvation = -21.567903 kcal Electronic energy + Delta-G solvation = -17520.840021 eV Core-core repulsion = 14912.339331 eV Total energy + Delta-G solvation = -2608.500691 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73915 -38.68412 -35.93210 -34.54494 -32.00741 -31.13809 -30.11445 -28.19397 -27.14437 -24.99546 -23.42916 -22.86360 -21.68309 -20.65072 -19.20062 -17.23969 -16.57372 -16.29785 -15.87507 -15.66094 -15.21321 -15.03278 -14.96554 -14.24731 -13.91133 -13.78916 -13.59995 -13.35192 -13.07279 -12.92432 -12.89001 -12.68386 -12.62335 -12.35666 -12.20093 -12.09075 -11.65246 -11.59906 -11.43748 -11.25770 -11.14053 -10.98358 -9.37636 -9.23434 -9.06116 -8.62843 -6.31945 0.96918 1.17768 1.37726 1.48793 1.53956 2.21201 2.70949 3.42689 3.83021 3.88279 4.14587 4.28790 4.33668 4.40841 4.48428 4.59076 4.65330 4.67457 4.69057 4.84597 4.90271 4.98444 5.05927 5.07337 5.10398 5.16748 5.18719 5.26559 5.39628 5.42605 5.50074 5.54798 5.65233 5.73183 5.98528 6.12063 6.25296 6.32961 6.42071 6.60462 6.72336 6.96019 7.06345 8.34095 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045697 B = 0.004111 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.589860 B = 6808.827435 C = 7055.310129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.135 4.135 4 C 0.086 3.914 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.683 5.683 8 C 0.134 3.866 9 C -0.198 4.198 10 C -0.073 4.073 11 C -0.245 4.245 12 C 0.079 3.921 13 C -0.505 4.505 14 H 0.073 0.927 15 C 0.036 3.964 16 N -0.827 5.827 17 Si 0.982 3.018 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.190 4.190 22 C -0.098 4.098 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.337 0.663 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.287 0.713 39 H 0.099 0.901 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.795 1.363 4.657 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.024 4.024 5 H 0.089 0.911 6 C -0.238 4.238 7 N -0.313 5.313 8 C 0.006 3.994 9 C -0.200 4.200 10 C -0.092 4.092 11 C -0.265 4.265 12 C 0.077 3.923 13 C -0.535 4.535 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.453 5.453 17 Si 0.802 3.198 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.184 1.184 21 C -0.210 4.210 22 C -0.117 4.117 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.720 1.836 4.521 14.562 hybrid contribution 0.948 -1.131 -0.244 1.496 sum -12.772 0.705 4.277 13.488 Atomic orbital electron populations 1.21869 0.94007 1.02188 1.02078 1.21043 0.95782 0.96208 0.97008 1.21658 1.01230 0.95593 1.00729 1.21680 0.86935 0.95130 0.98669 0.91075 1.22507 1.02742 0.97096 1.01421 1.60646 1.06949 1.53410 1.10265 1.20434 0.89964 0.99085 0.89931 1.19349 0.94737 0.92493 1.13380 1.20631 0.93224 0.96926 0.98386 1.21174 0.94585 0.96939 1.13806 1.17954 0.93896 0.91993 0.88440 1.19819 0.92158 0.99963 1.41558 0.90893 1.26747 1.05303 0.94106 0.91730 1.69879 1.40664 1.08728 1.26000 0.85265 0.76117 0.78696 0.79693 1.18551 1.19085 1.18402 1.21247 0.93488 0.98074 1.08150 1.20762 0.93842 0.96760 1.00327 0.91886 0.92085 0.92565 0.92010 0.92829 0.93319 0.93463 0.93655 0.92554 0.90395 0.84550 0.95580 0.91403 0.87102 0.88881 0.90196 0.88338 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.84 71.98 0.64 -1.64 16 2 C -0.08 -1.67 2.69 -10.79 -0.03 -1.70 16 3 C -0.13 -3.02 9.04 71.98 0.65 -2.37 16 4 C 0.09 1.96 2.17 44.92 0.10 2.06 16 5 H 0.07 1.66 7.80 -2.39 -0.02 1.64 16 6 C -0.18 -3.59 8.81 71.98 0.63 -2.96 16 7 N -0.68 -19.97 5.47 -495.59 -2.71 -22.68 16 8 C 0.13 4.44 5.60 85.56 0.48 4.92 16 9 C -0.20 -8.39 5.41 -19.67 -0.11 -8.50 16 10 C -0.07 -3.28 9.67 22.22 0.21 -3.07 16 11 C -0.25 -12.52 9.80 22.73 0.22 -12.30 16 12 C 0.08 4.43 5.58 -21.29 -0.12 4.32 16 13 C -0.51 -28.20 9.05 23.46 0.21 -27.98 16 14 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 15 C 0.04 1.85 5.14 85.26 0.44 2.29 16 16 N -0.83 -44.22 10.95 21.83 0.24 -43.98 16 17 Si 0.98 39.05 29.59 68.60 2.03 41.08 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 19 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 21 C -0.19 -10.23 8.70 22.73 0.20 -10.03 16 22 C -0.10 -4.55 9.67 22.21 0.21 -4.34 16 23 H 0.06 0.89 6.43 -2.39 -0.02 0.88 16 24 H 0.06 0.87 8.14 -2.38 -0.02 0.86 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.05 1.33 7.60 -2.39 -0.02 1.31 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 0.99 7.45 -2.39 -0.02 0.97 16 31 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 32 H 0.08 1.28 6.43 -2.39 -0.02 1.26 16 33 H 0.34 10.20 8.46 -89.69 -0.76 9.44 16 34 H 0.03 0.83 7.37 -2.39 -0.02 0.81 16 35 H 0.07 2.16 7.99 -2.39 -0.02 2.14 16 36 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 38 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 39 H 0.10 5.55 6.15 -2.91 -0.02 5.54 16 40 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -58.15 322.42 3.54 -54.61 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.24 Total: 32.28 kcal Atomic # 6 Polarization: -65.05 SS G_CDS: 3.74 Total: -61.31 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -2.47 Total: -66.66 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -58.15 3.54 -54.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399002448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.040 kcal (2) G-P(sol) polarization free energy of solvation -58.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds