Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46998 * 2 1 4 4 H 1.08993 * 109.47028 * 304.99869 * 3 2 1 5 5 C 1.53001 * 109.47253 * 65.00069 * 3 2 1 6 6 C 1.53005 * 109.46697 * 184.99774 * 3 2 1 7 7 N 1.46896 * 109.46692 * 175.00087 * 6 3 2 8 8 C 1.46904 * 110.99834 * 180.02562 * 7 6 3 9 9 C 1.50701 * 109.47134 * 180.02562 * 8 7 6 10 10 C 1.38642 * 119.74412 * 269.72295 * 9 8 7 11 11 C 1.37621 * 120.24161 * 179.72037 * 10 9 8 12 12 C 1.40712 * 119.74939 * 0.57093 * 11 10 9 13 13 C 1.41394 * 120.24622 * 179.67990 * 12 11 10 14 14 H 1.08001 * 120.00216 * 204.41208 * 13 12 11 15 15 C 1.39943 * 119.99996 * 24.40872 * 13 12 11 16 16 N 1.30832 * 120.00014 * 17.84472 * 15 13 12 17 17 Si 1.86793 * 120.00146 * 197.84778 * 15 13 12 18 18 H 1.48500 * 109.47366 * 59.99975 * 17 15 13 19 19 H 1.48506 * 109.47411 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47200 * 299.99737 * 17 15 13 21 21 C 1.40718 * 119.50814 * 359.70440 * 12 11 10 22 22 C 1.37618 * 119.74769 * 359.97438 * 21 12 11 23 23 H 1.08999 * 109.46822 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46921 * 300.00448 * 1 2 3 25 25 H 1.08997 * 109.46897 * 60.00029 * 1 2 3 26 26 H 1.08993 * 109.47187 * 239.99834 * 2 1 3 27 27 H 1.09007 * 109.46428 * 119.99885 * 2 1 3 28 28 H 1.08993 * 109.47226 * 59.99159 * 5 3 2 29 29 H 1.09001 * 109.46802 * 299.99658 * 5 3 2 30 30 H 1.08990 * 109.47097 * 180.02562 * 5 3 2 31 31 H 1.09002 * 109.46909 * 294.99946 * 6 3 2 32 32 H 1.08994 * 109.47103 * 54.99995 * 6 3 2 33 33 H 1.00893 * 111.00413 * 56.04823 * 7 6 3 34 34 H 1.09002 * 109.46516 * 299.99282 * 8 7 6 35 35 H 1.08994 * 109.47075 * 59.99649 * 8 7 6 36 36 H 1.07993 * 119.87540 * 359.97438 * 10 9 8 37 37 H 1.08000 * 120.12050 * 180.27983 * 11 10 9 38 38 H 0.96993 * 119.99778 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.12363 * 179.97438 * 21 12 11 40 40 H 1.07998 * 119.87629 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5649 1.4443 -0.1257 7 7 4.0446 2.8275 -0.2461 8 6 5.5079 2.8683 -0.3696 9 6 5.9621 4.3002 -0.4900 10 6 6.0757 4.8826 -1.7430 11 6 6.4841 6.1912 -1.8646 12 6 6.7981 6.9346 -0.7119 13 6 7.2252 8.2778 -0.8251 14 1 7.8255 8.7212 -0.0444 15 6 6.8701 9.0326 -1.9487 16 7 5.8814 8.6437 -2.7122 17 14 7.8076 10.5954 -2.3584 18 1 9.2389 10.2697 -2.5829 19 1 7.2397 11.2057 -3.5874 20 1 7.6891 11.5539 -1.2303 21 6 6.6846 6.3312 0.5543 22 6 6.2679 5.0233 0.6525 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 2.0698 1.5875 2.1491 29 1 0.5489 2.1253 1.3969 30 1 1.9982 3.1543 1.3071 31 1 4.0029 0.9835 0.7597 32 1 3.8571 0.8800 -1.0112 33 1 3.7314 3.3879 0.5323 34 1 5.9597 2.4174 0.5140 35 1 5.8132 2.3140 -1.2570 36 1 5.8391 4.3086 -2.6266 37 1 6.5676 6.6444 -2.8414 38 1 5.6351 9.1671 -3.4908 39 1 6.9235 6.8925 1.4455 40 1 6.1805 4.5580 1.6232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399016428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -12.024030 kcal Electronic energy + Delta-G solvation = -17209.249181 eV Core-core repulsion = 14601.162343 eV Total energy + Delta-G solvation = -2608.086837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.01143 -37.19793 -34.66220 -33.33116 -30.61556 -29.32248 -29.06185 -26.86364 -25.50193 -23.34264 -22.06807 -20.90954 -20.06271 -19.61298 -17.26079 -15.93255 -15.34936 -15.19721 -14.51136 -14.24516 -14.00320 -13.64622 -13.39789 -13.06622 -12.99764 -12.46880 -12.11351 -11.90671 -11.89532 -11.63436 -11.54960 -11.27710 -11.04194 -10.91163 -10.77905 -10.59626 -10.52772 -10.35601 -10.29724 -9.54521 -9.32915 -9.09112 -7.97043 -7.40212 -7.26566 -6.72613 -4.31788 2.78872 3.07861 3.10466 3.11752 3.21923 3.95081 4.46010 4.72963 4.84588 4.95192 5.08435 5.26124 5.47468 5.48555 5.63012 5.71952 5.74780 5.84662 5.88646 5.96153 5.97281 5.99687 6.03540 6.08493 6.29170 6.37024 6.40973 6.44900 6.49265 6.99584 7.10412 7.33684 7.40154 7.50328 7.65329 7.80011 7.94799 8.09092 8.19544 8.33935 8.68293 8.92945 9.01871 10.21667 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041400 B = 0.003765 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.166887 B = 7434.434494 C = 7631.566834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.092 4.092 4 H 0.079 0.921 5 C -0.151 4.151 6 C 0.062 3.938 7 N -0.685 5.685 8 C 0.125 3.875 9 C -0.213 4.213 10 C -0.079 4.079 11 C -0.167 4.167 12 C 0.112 3.888 13 C -0.465 4.465 14 H 0.076 0.924 15 C 0.076 3.924 16 N -0.791 5.791 17 Si 0.907 3.093 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.228 4.228 22 C -0.086 4.086 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.021 0.979 32 H 0.066 0.934 33 H 0.339 0.661 34 H 0.016 0.984 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.281 0.719 39 H 0.090 0.910 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 -11.138 3.304 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.111 4.111 4 H 0.098 0.902 5 C -0.208 4.208 6 C -0.068 4.068 7 N -0.317 5.317 8 C -0.003 4.003 9 C -0.215 4.215 10 C -0.098 4.098 11 C -0.187 4.187 12 C 0.110 3.890 13 C -0.494 4.494 14 H 0.094 0.906 15 C -0.142 4.142 16 N -0.416 5.416 17 Si 0.732 3.268 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.247 4.247 22 C -0.105 4.105 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.367 -11.041 2.416 12.972 hybrid contribution 0.570 0.562 0.694 1.060 sum -5.797 -10.478 3.110 12.372 Atomic orbital electron populations 1.21810 0.95983 1.01191 1.02003 1.21539 0.95823 0.96558 1.01698 1.21188 0.95300 0.95696 0.98890 0.90246 1.21900 1.01158 1.00904 0.96852 1.21997 0.94221 0.91049 0.99510 1.60650 1.11928 1.09540 1.49596 1.20549 0.85991 0.95170 0.98611 1.18921 1.13876 0.94991 0.93692 1.20503 0.99139 0.95175 0.94993 1.21312 1.05668 0.92648 0.99049 1.17614 0.88043 0.92670 0.90706 1.19558 1.29489 0.96268 1.04089 0.90579 1.25908 0.93558 0.99517 0.95202 1.69831 1.20833 1.37806 1.13180 0.86388 0.80828 0.81117 0.78483 1.18857 1.20352 1.19059 1.20924 1.11769 0.95507 0.96540 1.20348 1.00080 0.94609 0.95429 0.93133 0.92545 0.92697 0.92089 0.92334 0.93236 0.92587 0.92136 0.96127 0.91587 0.84146 0.96563 0.92097 0.89492 0.86526 0.90844 0.89202 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.12 -1.14 5.40 -26.73 -0.14 -1.28 16 3 C -0.09 -1.07 2.60 -90.62 -0.24 -1.30 16 4 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.15 -1.68 8.72 37.16 0.32 -1.35 16 6 C 0.06 0.83 5.14 -3.82 -0.02 0.81 16 7 N -0.69 -11.41 6.49 -115.06 -0.75 -12.16 16 8 C 0.12 2.26 5.80 -4.97 -0.03 2.23 16 9 C -0.21 -4.71 5.41 -104.33 -0.56 -5.27 16 10 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 11 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 12 C 0.11 3.04 5.57 -106.83 -0.60 2.44 16 13 C -0.46 -12.50 9.05 -37.74 -0.34 -12.84 16 14 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 15 C 0.08 1.93 5.14 -17.34 -0.09 1.85 16 16 N -0.79 -20.77 10.95 55.55 0.61 -20.16 16 17 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 18 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 21 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 22 C -0.09 -1.94 9.67 -39.66 -0.38 -2.32 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 30 H 0.06 0.74 6.68 -51.93 -0.35 0.40 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.34 5.68 6.98 -39.30 -0.27 5.41 16 34 H 0.02 0.28 8.08 -51.93 -0.42 -0.14 16 35 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 38 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 39 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 40 H 0.08 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -27.10 323.31 -9.78 -36.88 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.66 Total: 7.87 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: -2.82 Total: -31.11 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: -0.14 Total: -32.32 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.10 -9.78 -36.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399016428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.856 kcal (2) G-P(sol) polarization free energy of solvation -27.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds