Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46998 * 2 1 4 4 H 1.08993 * 109.47028 * 304.99869 * 3 2 1 5 5 C 1.53001 * 109.47253 * 65.00069 * 3 2 1 6 6 C 1.53005 * 109.46697 * 184.99774 * 3 2 1 7 7 N 1.46896 * 109.46692 * 175.00087 * 6 3 2 8 8 C 1.46904 * 110.99834 * 180.02562 * 7 6 3 9 9 C 1.50701 * 109.47134 * 180.02562 * 8 7 6 10 10 C 1.38642 * 119.74412 * 269.72295 * 9 8 7 11 11 C 1.37621 * 120.24161 * 179.72037 * 10 9 8 12 12 C 1.40712 * 119.74939 * 0.57093 * 11 10 9 13 13 C 1.41394 * 120.24622 * 179.67990 * 12 11 10 14 14 H 1.08001 * 120.00216 * 204.41208 * 13 12 11 15 15 C 1.39943 * 119.99996 * 24.40872 * 13 12 11 16 16 N 1.30832 * 120.00014 * 17.84472 * 15 13 12 17 17 Si 1.86793 * 120.00146 * 197.84778 * 15 13 12 18 18 H 1.48500 * 109.47366 * 59.99975 * 17 15 13 19 19 H 1.48506 * 109.47411 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47200 * 299.99737 * 17 15 13 21 21 C 1.40718 * 119.50814 * 359.70440 * 12 11 10 22 22 C 1.37618 * 119.74769 * 359.97438 * 21 12 11 23 23 H 1.08999 * 109.46822 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46921 * 300.00448 * 1 2 3 25 25 H 1.08997 * 109.46897 * 60.00029 * 1 2 3 26 26 H 1.08993 * 109.47187 * 239.99834 * 2 1 3 27 27 H 1.09007 * 109.46428 * 119.99885 * 2 1 3 28 28 H 1.08993 * 109.47226 * 59.99159 * 5 3 2 29 29 H 1.09001 * 109.46802 * 299.99658 * 5 3 2 30 30 H 1.08990 * 109.47097 * 180.02562 * 5 3 2 31 31 H 1.09002 * 109.46909 * 294.99946 * 6 3 2 32 32 H 1.08994 * 109.47103 * 54.99995 * 6 3 2 33 33 H 1.00893 * 111.00413 * 56.04823 * 7 6 3 34 34 H 1.09002 * 109.46516 * 299.99282 * 8 7 6 35 35 H 1.08994 * 109.47075 * 59.99649 * 8 7 6 36 36 H 1.07993 * 119.87540 * 359.97438 * 10 9 8 37 37 H 1.08000 * 120.12050 * 180.27983 * 11 10 9 38 38 H 0.96993 * 119.99778 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.12363 * 179.97438 * 21 12 11 40 40 H 1.07998 * 119.87629 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5649 1.4443 -0.1257 7 7 4.0446 2.8275 -0.2461 8 6 5.5079 2.8683 -0.3696 9 6 5.9621 4.3002 -0.4900 10 6 6.0757 4.8826 -1.7430 11 6 6.4841 6.1912 -1.8646 12 6 6.7981 6.9346 -0.7119 13 6 7.2252 8.2778 -0.8251 14 1 7.8255 8.7212 -0.0444 15 6 6.8701 9.0326 -1.9487 16 7 5.8814 8.6437 -2.7122 17 14 7.8076 10.5954 -2.3584 18 1 9.2389 10.2697 -2.5829 19 1 7.2397 11.2057 -3.5874 20 1 7.6891 11.5539 -1.2303 21 6 6.6846 6.3312 0.5543 22 6 6.2679 5.0233 0.6525 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 2.0698 1.5875 2.1491 29 1 0.5489 2.1253 1.3969 30 1 1.9982 3.1543 1.3071 31 1 4.0029 0.9835 0.7597 32 1 3.8571 0.8800 -1.0112 33 1 3.7314 3.3879 0.5323 34 1 5.9597 2.4174 0.5140 35 1 5.8132 2.3140 -1.2570 36 1 5.8391 4.3086 -2.6266 37 1 6.5676 6.6444 -2.8414 38 1 5.6351 9.1671 -3.4908 39 1 6.9235 6.8925 1.4455 40 1 6.1805 4.5580 1.6232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399016428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -25.655606 kcal Electronic energy + Delta-G solvation = -17209.840290 eV Core-core repulsion = 14601.162343 eV Total energy + Delta-G solvation = -2608.677947 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.64736 -38.45266 -36.14979 -34.94397 -32.14096 -31.14447 -30.33402 -28.28655 -26.79785 -24.83671 -23.18023 -22.80277 -21.68854 -20.70421 -19.20684 -17.25277 -17.10985 -16.22423 -15.85484 -15.68424 -15.56791 -15.18142 -14.69305 -14.38579 -14.04356 -13.98448 -13.78773 -13.37541 -13.24456 -12.86184 -12.76293 -12.69396 -12.56838 -12.36979 -12.16553 -12.05417 -11.65655 -11.46889 -11.36617 -11.29313 -11.16785 -10.97850 -9.34356 -9.33362 -9.10488 -8.62084 -6.32174 0.96866 1.16461 1.37829 1.49181 1.53837 2.21213 2.70584 3.41930 3.82021 3.97144 4.03898 4.12370 4.32931 4.36134 4.47389 4.57738 4.63149 4.65275 4.69554 4.78732 4.82828 4.85634 5.00255 5.08020 5.13581 5.16820 5.17163 5.23693 5.26947 5.40027 5.48185 5.53812 5.56858 5.72743 5.96144 6.11483 6.20975 6.31628 6.40625 6.56015 6.72587 6.95645 7.06056 8.34549 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041400 B = 0.003765 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.166887 B = 7434.434494 C = 7631.566834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.088 4.088 4 H 0.063 0.937 5 C -0.149 4.149 6 C 0.064 3.936 7 N -0.698 5.698 8 C 0.131 3.869 9 C -0.202 4.202 10 C -0.087 4.087 11 C -0.191 4.191 12 C 0.079 3.921 13 C -0.504 4.504 14 H 0.074 0.926 15 C 0.034 3.966 16 N -0.825 5.825 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.243 4.243 22 C -0.085 4.085 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.338 0.662 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.287 0.713 39 H 0.096 0.904 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 -12.411 3.996 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.107 4.107 4 H 0.081 0.919 5 C -0.206 4.206 6 C -0.065 4.065 7 N -0.330 5.330 8 C 0.003 3.997 9 C -0.203 4.203 10 C -0.106 4.106 11 C -0.211 4.211 12 C 0.076 3.924 13 C -0.533 4.533 14 H 0.093 0.907 15 C -0.181 4.181 16 N -0.451 5.451 17 Si 0.803 3.197 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.263 4.263 22 C -0.104 4.104 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.778 -12.336 3.117 14.417 hybrid contribution 0.626 0.800 0.528 1.145 sum -6.152 -11.536 3.645 13.573 Atomic orbital electron populations 1.21805 0.95231 1.01986 1.01900 1.21503 0.96451 0.95022 1.02213 1.21146 0.94040 0.97007 0.98520 0.91857 1.21881 1.01913 0.99964 0.96855 1.22057 0.95299 0.89070 1.00061 1.60568 1.10785 1.11681 1.49960 1.20460 0.87153 0.92319 0.99786 1.19361 1.11417 0.96872 0.92649 1.20735 0.98773 0.94476 0.96596 1.21272 1.07648 0.93914 0.98267 1.17967 0.89210 0.93415 0.91760 1.19818 1.31021 0.96966 1.05522 0.90736 1.26776 0.93949 1.02881 0.94458 1.69891 1.22009 1.39479 1.13762 0.85254 0.79153 0.76680 0.78606 1.18512 1.19166 1.18332 1.21149 1.12257 0.96819 0.96069 1.20679 0.98755 0.93782 0.97159 0.91918 0.92328 0.93156 0.91862 0.91522 0.92384 0.91548 0.93686 0.95030 0.91393 0.84257 0.94851 0.91432 0.88169 0.88395 0.90197 0.88622 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.67 71.98 0.70 -1.59 16 2 C -0.11 -1.91 5.40 30.60 0.17 -1.75 16 3 C -0.09 -1.88 2.60 -10.79 -0.03 -1.91 16 4 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.15 -3.02 8.72 71.98 0.63 -2.39 16 6 C 0.06 1.56 5.14 86.31 0.44 2.00 16 7 N -0.70 -21.84 6.49 -517.93 -3.36 -25.20 16 8 C 0.13 4.43 5.80 85.56 0.50 4.93 16 9 C -0.20 -8.64 5.41 -19.67 -0.11 -8.75 16 10 C -0.09 -4.18 9.67 22.22 0.21 -3.97 16 11 C -0.19 -10.47 8.70 22.73 0.20 -10.27 16 12 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 13 C -0.50 -28.03 9.05 23.46 0.21 -27.82 16 14 H 0.07 3.99 7.91 -2.91 -0.02 3.96 16 15 C 0.03 1.77 5.14 85.26 0.44 2.21 16 16 N -0.83 -44.61 10.95 21.83 0.24 -44.37 16 17 Si 0.98 39.12 29.59 68.60 2.03 41.15 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 21 C -0.24 -12.24 9.80 22.73 0.22 -12.02 16 22 C -0.09 -3.74 9.67 22.22 0.21 -3.53 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 0.85 6.56 -2.39 -0.02 0.84 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.19 6.56 -2.39 -0.02 1.18 16 30 H 0.04 1.05 6.68 -2.39 -0.02 1.03 16 31 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.34 10.72 6.98 -89.70 -0.63 10.09 16 34 H 0.03 1.03 8.08 -2.39 -0.02 1.01 16 35 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 36 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 38 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 39 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 40 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -59.12 323.31 2.96 -56.16 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.37 Total: 32.83 kcal Atomic # 6 Polarization: -64.25 SS G_CDS: 3.68 Total: -60.57 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -3.12 Total: -69.57 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -59.12 2.96 -56.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399016428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.501 kcal (2) G-P(sol) polarization free energy of solvation -59.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds