Wall clock time and date at job start Mon Mar 30 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 H 1.09004 * 109.46805 * 54.99532 * 3 2 1 5 5 C 1.53000 * 109.47126 * 295.00232 * 3 2 1 6 6 C 1.52999 * 109.47349 * 174.99817 * 3 2 1 7 7 N 1.46902 * 109.46962 * 185.00127 * 6 3 2 8 8 C 1.46895 * 110.99798 * 180.02562 * 7 6 3 9 9 C 1.50696 * 109.47395 * 179.97438 * 8 7 6 10 10 C 1.38635 * 119.74985 * 269.73125 * 9 8 7 11 11 C 1.37617 * 120.24687 * 179.71926 * 10 9 8 12 12 C 1.40716 * 119.74723 * 0.57065 * 11 10 9 13 13 C 1.41396 * 120.24644 * 179.68554 * 12 11 10 14 14 H 1.08005 * 119.99733 * 204.40359 * 13 12 11 15 15 C 1.39939 * 120.00101 * 24.40261 * 13 12 11 16 16 N 1.30820 * 120.00244 * 17.84696 * 15 13 12 17 17 Si 1.86804 * 120.00028 * 197.85075 * 15 13 12 18 18 H 1.48499 * 109.47197 * 89.99595 * 17 15 13 19 19 H 1.48506 * 109.47141 * 209.99804 * 17 15 13 20 20 H 1.48498 * 109.46874 * 329.99781 * 17 15 13 21 21 C 1.40719 * 119.51127 * 359.69821 * 12 11 10 22 22 C 1.37620 * 119.74095 * 0.02562 * 21 12 11 23 23 H 1.08997 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47259 * 299.99939 * 1 2 3 25 25 H 1.09004 * 109.47155 * 60.00297 * 1 2 3 26 26 H 1.09004 * 109.47674 * 240.00283 * 2 1 3 27 27 H 1.08995 * 109.47108 * 119.99489 * 2 1 3 28 28 H 1.09003 * 109.47256 * 179.97438 * 5 3 2 29 29 H 1.09001 * 109.47264 * 299.99859 * 5 3 2 30 30 H 1.08997 * 109.47711 * 59.99578 * 5 3 2 31 31 H 1.09003 * 109.46758 * 64.99950 * 6 3 2 32 32 H 1.08992 * 109.47114 * 305.00045 * 6 3 2 33 33 H 1.00901 * 110.99973 * 303.95421 * 7 6 3 34 34 H 1.09007 * 109.47449 * 59.99598 * 8 7 6 35 35 H 1.08998 * 109.47065 * 300.00125 * 8 7 6 36 36 H 1.07993 * 119.87867 * 359.97096 * 10 9 8 37 37 H 1.08003 * 120.13271 * 180.27444 * 11 10 9 38 38 H 0.96997 * 120.00535 * 180.02562 * 16 15 13 39 39 H 1.07994 * 120.12787 * 179.97438 * 21 12 11 40 40 H 1.08006 * 119.87289 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 7 4.0444 2.8277 0.2462 8 6 5.5077 2.8687 0.3686 9 6 5.9619 4.3005 0.4891 10 6 6.2727 5.0221 -0.6531 11 6 6.6829 6.3321 -0.5553 12 6 6.7979 6.9350 0.7110 13 6 7.2248 8.2782 0.8241 14 1 7.6854 8.6233 1.7380 15 6 7.0504 9.1606 -0.2480 16 7 6.2033 8.8714 -1.2021 17 14 8.0273 10.7513 -0.3169 18 1 9.3033 10.5177 -1.0396 19 1 7.2370 11.7870 -1.0298 20 1 8.3180 11.2138 1.0640 21 6 6.4850 6.1913 1.8638 22 6 6.0713 4.8844 1.7418 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.9981 3.1544 -1.3071 29 1 2.0698 1.5876 -2.1492 30 1 0.5489 2.1253 -1.3970 31 1 4.0029 0.9837 -0.7596 32 1 3.8570 0.8802 1.0113 33 1 3.7311 3.3881 -0.5322 34 1 5.9591 2.4179 -0.5154 35 1 5.8138 2.3142 1.2556 36 1 6.1888 4.5558 -1.6235 37 1 6.9204 6.8939 -1.4466 38 1 6.0827 9.4827 -1.9454 39 1 6.5701 6.6440 2.8406 40 1 5.8311 4.3114 2.6252 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399016429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:04 Heat of formation + Delta-G solvation = -12.301291 kcal Electronic energy + Delta-G solvation = -17217.903974 eV Core-core repulsion = 14609.805114 eV Total energy + Delta-G solvation = -2608.098860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.01109 -37.19870 -34.66156 -33.33751 -30.61703 -29.31686 -29.06836 -26.86237 -25.50053 -23.34176 -22.05005 -20.95481 -20.04468 -19.60358 -17.26109 -15.98124 -15.31232 -15.14913 -14.50769 -14.31910 -13.99319 -13.63151 -13.40210 -13.08373 -12.98706 -12.44684 -12.11374 -11.92405 -11.87940 -11.66043 -11.48479 -11.29511 -11.05546 -10.91921 -10.84073 -10.57507 -10.52147 -10.33450 -10.28434 -9.51305 -9.35338 -9.11575 -7.97607 -7.41490 -7.26000 -6.73898 -4.32285 2.76606 3.07785 3.11716 3.12101 3.20711 3.94615 4.45715 4.72521 4.84731 4.95428 5.08694 5.26373 5.47773 5.48996 5.63246 5.72796 5.74303 5.84816 5.88725 5.95216 5.98653 6.00099 6.03407 6.09507 6.32446 6.38020 6.41805 6.45191 6.46464 6.97812 7.10344 7.31211 7.41397 7.49706 7.64991 7.82468 7.93711 8.08616 8.18366 8.33803 8.67167 8.92602 9.01200 10.20657 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041225 B = 0.003817 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.028430 B = 7333.359576 C = 7661.961700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.092 4.092 4 H 0.079 0.921 5 C -0.151 4.151 6 C 0.062 3.938 7 N -0.686 5.686 8 C 0.124 3.876 9 C -0.213 4.213 10 C -0.096 4.096 11 C -0.166 4.166 12 C 0.112 3.888 13 C -0.463 4.463 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.793 5.793 17 Si 0.907 3.093 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.228 4.228 22 C -0.069 4.069 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.340 0.660 34 H 0.017 0.983 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.280 0.720 39 H 0.091 0.909 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.299 -11.300 -0.976 12.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.097 0.903 5 C -0.209 4.209 6 C -0.068 4.068 7 N -0.318 5.318 8 C -0.004 4.004 9 C -0.215 4.215 10 C -0.115 4.115 11 C -0.185 4.185 12 C 0.109 3.891 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.732 3.268 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.248 4.248 22 C -0.088 4.088 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.509 -11.176 -0.515 12.943 hybrid contribution 0.601 0.576 -1.044 1.335 sum -5.908 -10.599 -1.558 12.234 Atomic orbital electron populations 1.21808 0.95984 1.01189 1.02001 1.21538 0.95820 0.96566 1.01696 1.21185 0.95286 0.95681 0.98884 0.90295 1.21906 1.01153 1.00959 0.96841 1.21998 0.94229 0.91065 0.99510 1.60678 1.11886 1.09542 1.49663 1.20547 0.86039 0.95149 0.98616 1.18917 1.13964 0.95012 0.93602 1.20521 1.00613 0.94984 0.95370 1.21270 1.05683 0.93219 0.98361 1.17626 0.87779 0.92603 0.91079 1.19605 1.35257 0.94428 1.00016 0.90487 1.25904 0.93511 1.00107 0.94647 1.69831 1.26246 1.36584 1.09191 0.86329 0.80310 0.80655 0.79510 1.19322 1.20354 1.18635 1.20978 1.11042 0.95324 0.97425 1.20335 0.98613 0.94715 0.95110 0.93137 0.92712 0.92534 0.92318 0.92109 0.92087 0.93214 0.92589 0.96091 0.91619 0.84036 0.96485 0.92171 0.89985 0.86560 0.90950 0.89119 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.12 -1.14 5.40 -26.73 -0.14 -1.28 16 3 C -0.09 -1.06 2.60 -90.62 -0.24 -1.30 16 4 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 5 C -0.15 -1.71 8.72 37.16 0.32 -1.39 16 6 C 0.06 0.82 5.14 -3.82 -0.02 0.80 16 7 N -0.69 -11.41 6.49 -115.06 -0.75 -12.16 16 8 C 0.12 2.26 5.80 -4.98 -0.03 2.23 16 9 C -0.21 -4.70 5.41 -104.33 -0.56 -5.27 16 10 C -0.10 -2.25 9.67 -39.66 -0.38 -2.63 16 11 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 12 C 0.11 3.02 5.58 -106.82 -0.60 2.43 16 13 C -0.46 -12.46 9.05 -37.74 -0.34 -12.81 16 14 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 15 C 0.08 1.92 5.14 -17.35 -0.09 1.84 16 16 N -0.79 -20.68 10.95 55.55 0.61 -20.07 16 17 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 21 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16 22 C -0.07 -1.59 9.67 -39.66 -0.38 -1.97 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.77 6.68 -51.93 -0.35 0.42 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.34 5.80 6.97 -39.29 -0.27 5.52 16 34 H 0.02 0.30 8.08 -51.92 -0.42 -0.12 16 35 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 36 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.12 3.15 6.16 -52.48 -0.32 2.82 16 38 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 40 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -26.98 323.31 -9.78 -36.76 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.66 Total: 7.92 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: -2.82 Total: -31.12 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: -0.14 Total: -32.23 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.98 -9.78 -36.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399016429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.460 kcal (2) G-P(sol) polarization free energy of solvation -26.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds