Wall clock time and date at job start Mon Mar 30 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 H 1.09004 * 109.46805 * 54.99532 * 3 2 1 5 5 C 1.53000 * 109.47126 * 295.00232 * 3 2 1 6 6 C 1.52999 * 109.47349 * 174.99817 * 3 2 1 7 7 N 1.46902 * 109.46962 * 185.00127 * 6 3 2 8 8 C 1.46895 * 110.99798 * 180.02562 * 7 6 3 9 9 C 1.50696 * 109.47395 * 179.97438 * 8 7 6 10 10 C 1.38635 * 119.74985 * 269.73125 * 9 8 7 11 11 C 1.37617 * 120.24687 * 179.71926 * 10 9 8 12 12 C 1.40716 * 119.74723 * 0.57065 * 11 10 9 13 13 C 1.41396 * 120.24644 * 179.68554 * 12 11 10 14 14 H 1.08005 * 119.99733 * 204.40359 * 13 12 11 15 15 C 1.39939 * 120.00101 * 24.40261 * 13 12 11 16 16 N 1.30820 * 120.00244 * 17.84696 * 15 13 12 17 17 Si 1.86804 * 120.00028 * 197.85075 * 15 13 12 18 18 H 1.48499 * 109.47197 * 89.99595 * 17 15 13 19 19 H 1.48506 * 109.47141 * 209.99804 * 17 15 13 20 20 H 1.48498 * 109.46874 * 329.99781 * 17 15 13 21 21 C 1.40719 * 119.51127 * 359.69821 * 12 11 10 22 22 C 1.37620 * 119.74095 * 0.02562 * 21 12 11 23 23 H 1.08997 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47259 * 299.99939 * 1 2 3 25 25 H 1.09004 * 109.47155 * 60.00297 * 1 2 3 26 26 H 1.09004 * 109.47674 * 240.00283 * 2 1 3 27 27 H 1.08995 * 109.47108 * 119.99489 * 2 1 3 28 28 H 1.09003 * 109.47256 * 179.97438 * 5 3 2 29 29 H 1.09001 * 109.47264 * 299.99859 * 5 3 2 30 30 H 1.08997 * 109.47711 * 59.99578 * 5 3 2 31 31 H 1.09003 * 109.46758 * 64.99950 * 6 3 2 32 32 H 1.08992 * 109.47114 * 305.00045 * 6 3 2 33 33 H 1.00901 * 110.99973 * 303.95421 * 7 6 3 34 34 H 1.09007 * 109.47449 * 59.99598 * 8 7 6 35 35 H 1.08998 * 109.47065 * 300.00125 * 8 7 6 36 36 H 1.07993 * 119.87867 * 359.97096 * 10 9 8 37 37 H 1.08003 * 120.13271 * 180.27444 * 11 10 9 38 38 H 0.96997 * 120.00535 * 180.02562 * 16 15 13 39 39 H 1.07994 * 120.12787 * 179.97438 * 21 12 11 40 40 H 1.08006 * 119.87289 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 7 4.0444 2.8277 0.2462 8 6 5.5077 2.8687 0.3686 9 6 5.9619 4.3005 0.4891 10 6 6.2727 5.0221 -0.6531 11 6 6.6829 6.3321 -0.5553 12 6 6.7979 6.9350 0.7110 13 6 7.2248 8.2782 0.8241 14 1 7.6854 8.6233 1.7380 15 6 7.0504 9.1606 -0.2480 16 7 6.2033 8.8714 -1.2021 17 14 8.0273 10.7513 -0.3169 18 1 9.3033 10.5177 -1.0396 19 1 7.2370 11.7870 -1.0298 20 1 8.3180 11.2138 1.0640 21 6 6.4850 6.1913 1.8638 22 6 6.0713 4.8844 1.7418 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.9981 3.1544 -1.3071 29 1 2.0698 1.5876 -2.1492 30 1 0.5489 2.1253 -1.3970 31 1 4.0029 0.9837 -0.7596 32 1 3.8570 0.8802 1.0113 33 1 3.7311 3.3881 -0.5322 34 1 5.9591 2.4179 -0.5154 35 1 5.8138 2.3142 1.2556 36 1 6.1888 4.5558 -1.6235 37 1 6.9204 6.8939 -1.4466 38 1 6.0827 9.4827 -1.9454 39 1 6.5701 6.6440 2.8406 40 1 5.8311 4.3114 2.6252 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399016429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:04 Heat of formation + Delta-G solvation = -25.772762 kcal Electronic energy + Delta-G solvation = -17218.488141 eV Core-core repulsion = 14609.805114 eV Total energy + Delta-G solvation = -2608.683027 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.64909 -38.45275 -36.14962 -34.94831 -32.13878 -31.14594 -30.33730 -28.29098 -26.80045 -24.82922 -23.13893 -22.86955 -21.66286 -20.70405 -19.20753 -17.41167 -16.89466 -16.25817 -15.92453 -15.67902 -15.55038 -15.18642 -14.68470 -14.38759 -14.04752 -13.98258 -13.78825 -13.44082 -13.09978 -12.88369 -12.81286 -12.72004 -12.59438 -12.39668 -12.13155 -12.03732 -11.62155 -11.48002 -11.36899 -11.27517 -11.19300 -10.99202 -9.40625 -9.26856 -9.12684 -8.62907 -6.32406 0.95217 1.16908 1.37836 1.51146 1.51780 2.21144 2.69908 3.41503 3.81705 3.96821 4.03760 4.11983 4.32890 4.35179 4.47310 4.60003 4.63545 4.65495 4.69997 4.78379 4.82248 4.85128 5.00083 5.05726 5.13345 5.16690 5.17461 5.23784 5.26778 5.38951 5.48951 5.53542 5.56750 5.72459 5.96847 6.11534 6.21985 6.28333 6.41161 6.53601 6.71764 6.95576 7.05600 8.34089 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041225 B = 0.003817 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.028430 B = 7333.359576 C = 7661.961700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.087 4.087 4 H 0.065 0.935 5 C -0.150 4.150 6 C 0.063 3.937 7 N -0.696 5.696 8 C 0.130 3.870 9 C -0.201 4.201 10 C -0.099 4.099 11 C -0.189 4.189 12 C 0.079 3.921 13 C -0.503 4.503 14 H 0.073 0.927 15 C 0.035 3.965 16 N -0.825 5.825 17 Si 0.983 3.017 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.245 4.245 22 C -0.073 4.073 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.337 0.663 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.287 0.713 39 H 0.094 0.906 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 -12.627 -1.129 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.106 4.106 4 H 0.084 0.916 5 C -0.207 4.207 6 C -0.065 4.065 7 N -0.328 5.328 8 C 0.002 3.998 9 C -0.203 4.203 10 C -0.118 4.118 11 C -0.209 4.209 12 C 0.076 3.924 13 C -0.532 4.532 14 H 0.091 0.909 15 C -0.180 4.180 16 N -0.451 5.451 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.264 4.264 22 C -0.092 4.092 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.156 0.844 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.985 -12.527 -0.662 14.358 hybrid contribution 0.670 0.832 -0.979 1.449 sum -6.315 -11.695 -1.640 13.392 Atomic orbital electron populations 1.21803 0.95220 1.01989 1.01907 1.21502 0.96456 0.95000 1.02223 1.21142 0.94034 0.97011 0.98430 0.91607 1.21890 1.01920 0.99915 0.96978 1.22068 0.95302 0.89089 1.00089 1.60617 1.10709 1.11627 1.49816 1.20470 0.87161 0.92332 0.99807 1.19358 1.11463 0.96821 0.92650 1.20772 0.99788 0.94161 0.97030 1.21248 1.07546 0.94485 0.97624 1.17974 0.88948 0.93401 0.92046 1.19839 1.37144 0.95248 1.01016 0.90864 1.26755 0.93967 1.03507 0.93772 1.69880 1.27214 1.38187 1.09855 0.85201 0.78695 0.76154 0.79620 1.18666 1.19177 1.18293 1.21179 1.11637 0.96452 0.97173 1.20645 0.97805 0.94131 0.96590 0.91922 0.93014 0.92454 0.91681 0.91686 0.93826 0.92580 0.91497 0.95304 0.91070 0.84448 0.95360 0.90898 0.87921 0.88248 0.90194 0.88782 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.67 71.98 0.70 -1.57 16 2 C -0.11 -1.90 5.40 30.60 0.17 -1.74 16 3 C -0.09 -1.85 2.60 -10.79 -0.03 -1.88 16 4 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 5 C -0.15 -3.14 8.72 71.98 0.63 -2.51 16 6 C 0.06 1.54 5.14 86.30 0.44 1.98 16 7 N -0.70 -21.77 6.49 -517.95 -3.36 -25.13 16 8 C 0.13 4.41 5.80 85.56 0.50 4.91 16 9 C -0.20 -8.64 5.41 -19.68 -0.11 -8.74 16 10 C -0.10 -4.61 9.67 22.22 0.21 -4.40 16 11 C -0.19 -10.22 8.70 22.73 0.20 -10.02 16 12 C 0.08 4.39 5.58 -21.29 -0.12 4.27 16 13 C -0.50 -28.00 9.05 23.46 0.21 -27.79 16 14 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 15 C 0.03 1.79 5.14 85.26 0.44 2.23 16 16 N -0.83 -44.12 10.95 21.82 0.24 -43.88 16 17 Si 0.98 39.03 29.60 68.60 2.03 41.06 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 C -0.24 -12.51 9.80 22.73 0.22 -12.28 16 22 C -0.07 -3.31 9.67 22.22 0.21 -3.09 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.84 6.57 -2.38 -0.02 0.83 16 26 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 1.06 6.68 -2.39 -0.02 1.04 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.24 6.56 -2.39 -0.02 1.22 16 31 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.34 11.00 6.97 -89.69 -0.63 10.37 16 34 H 0.03 0.90 8.08 -2.38 -0.02 0.88 16 35 H 0.07 2.30 8.08 -2.39 -0.02 2.29 16 36 H 0.10 4.28 8.06 -2.91 -0.02 4.25 16 37 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 38 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 39 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -58.61 323.31 2.96 -55.65 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.37 Total: 32.93 kcal Atomic # 6 Polarization: -64.31 SS G_CDS: 3.68 Total: -60.63 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -3.12 Total: -69.01 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -58.61 2.96 -55.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399016429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.877 kcal (2) G-P(sol) polarization free energy of solvation -58.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds