Wall clock time and date at job start Mon Mar 30 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46980 * 2 1 4 4 C 1.52997 * 109.47018 * 239.99878 * 2 1 3 5 5 C 1.52999 * 109.46938 * 119.99567 * 2 1 3 6 6 N 1.46907 * 109.46926 * 60.00321 * 5 2 1 7 7 C 1.46897 * 110.99751 * 179.97438 * 6 5 2 8 8 C 1.50701 * 109.46848 * 179.97438 * 7 6 5 9 9 C 1.38638 * 119.74844 * 269.72835 * 8 7 6 10 10 C 1.37618 * 120.24746 * 179.72211 * 9 8 7 11 11 C 1.40714 * 119.74597 * 0.56882 * 10 9 8 12 12 C 1.41393 * 120.24755 * 179.68185 * 11 10 9 13 13 H 1.08001 * 120.00183 * 204.40530 * 12 11 10 14 14 C 1.39946 * 119.99975 * 24.40601 * 12 11 10 15 15 N 1.30821 * 119.99734 * 17.84723 * 14 12 11 16 16 Si 1.86800 * 120.00253 * 197.84996 * 14 12 11 17 17 H 1.48501 * 109.47300 * 89.99642 * 16 14 12 18 18 H 1.48504 * 109.47154 * 210.00117 * 16 14 12 19 19 H 1.48507 * 109.46892 * 329.99849 * 16 14 12 20 20 C 1.40719 * 119.50936 * 359.70489 * 11 10 9 21 21 C 1.37614 * 119.74667 * 359.97438 * 20 11 10 22 22 H 1.09004 * 109.46900 * 300.00443 * 1 2 3 23 23 H 1.09006 * 109.46978 * 59.99852 * 1 2 3 24 24 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47309 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.47386 * 299.99898 * 3 2 1 27 27 H 1.09004 * 109.47666 * 60.00026 * 3 2 1 28 28 H 1.08998 * 109.47170 * 299.99990 * 4 2 1 29 29 H 1.09006 * 109.47026 * 60.00299 * 4 2 1 30 30 H 1.09001 * 109.46979 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47560 * 299.99993 * 5 2 1 32 32 H 1.09002 * 109.46735 * 179.97438 * 5 2 1 33 33 H 1.00907 * 110.99524 * 303.95133 * 6 5 2 34 34 H 1.08998 * 109.47380 * 299.99254 * 7 6 5 35 35 H 1.08996 * 109.47452 * 60.00169 * 7 6 5 36 36 H 1.07999 * 119.87167 * 359.97330 * 9 8 7 37 37 H 1.07999 * 120.12875 * 180.27445 * 10 9 8 38 38 H 0.97006 * 119.99786 * 180.02562 * 15 14 12 39 39 H 1.08000 * 120.12718 * 179.97438 * 20 11 10 40 40 H 1.07997 * 119.87688 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.5503 -2.1062 1.2493 7 6 2.0218 -2.8312 2.4367 8 6 1.5002 -4.2446 2.4023 9 6 0.2824 -4.5431 2.9938 10 6 -0.2064 -5.8292 2.9634 11 6 0.5405 -6.8453 2.3392 12 6 0.0516 -8.1717 2.3077 13 1 0.7389 -8.9983 2.2038 14 6 -1.3230 -8.4133 2.4110 15 7 -2.1756 -7.4467 2.1876 16 14 -1.9402 -10.1161 2.8680 17 1 -2.0632 -10.2184 4.3444 18 1 -3.2679 -10.3455 2.2436 19 1 -0.9801 -11.1383 2.3793 20 6 1.7780 -6.5319 1.7471 21 6 2.2441 -5.2376 1.7837 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 -1.7489 -1.2492 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7209 -1.2494 31 1 1.6767 -0.2073 2.1392 32 1 3.1300 -0.7215 1.2490 33 1 0.5437 -2.1338 1.1843 34 1 3.1117 -2.8459 2.4445 35 1 1.6587 -2.3322 3.3351 36 1 -0.2867 -3.7625 3.4768 37 1 -1.1573 -6.0587 3.4210 38 1 -3.1284 -7.6141 2.2596 39 1 2.3597 -7.3041 1.2657 40 1 3.1933 -4.9946 1.3295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399075499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:20 Heat of formation + Delta-G solvation = -8.709603 kcal Electronic energy + Delta-G solvation = -17521.556557 eV Core-core repulsion = 14913.613444 eV Total energy + Delta-G solvation = -2607.943113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.27291 -37.38360 -34.50411 -33.15128 -30.03639 -29.21037 -27.31655 -27.09004 -26.79498 -24.43358 -22.57704 -20.95533 -19.84390 -18.66317 -17.26068 -15.80557 -15.17174 -14.87083 -14.68439 -14.09054 -13.98098 -13.65476 -13.26342 -13.14186 -12.57492 -12.27229 -12.12498 -11.92073 -11.87343 -11.58176 -11.51005 -11.39478 -11.06287 -10.92572 -10.78829 -10.61892 -10.52705 -10.31843 -10.27201 -9.51181 -9.35291 -9.11565 -7.94680 -7.41443 -7.25912 -6.73990 -4.32341 2.76705 3.07789 3.11692 3.12067 3.20815 3.94613 4.49221 4.77511 4.86012 4.93075 5.13022 5.51752 5.57545 5.64770 5.73334 5.77329 5.83115 5.86029 5.93932 5.95064 5.99160 6.09415 6.16531 6.26868 6.33508 6.39934 6.45795 6.46323 6.61336 6.97770 7.10304 7.31296 7.41420 7.50494 7.64974 7.83183 7.93868 8.08603 8.18489 8.33830 8.67170 8.92594 9.01200 10.20559 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039675 B = 0.004205 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.571396 B = 6657.451064 C = 6892.598221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.132 4.132 5 C 0.067 3.933 6 N -0.682 5.682 7 C 0.124 3.876 8 C -0.212 4.212 9 C -0.096 4.096 10 C -0.166 4.166 11 C 0.112 3.888 12 C -0.464 4.464 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.793 5.793 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.228 4.228 21 C -0.069 4.069 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.021 0.979 32 H 0.066 0.934 33 H 0.340 0.660 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.280 0.720 39 H 0.090 0.910 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 11.408 -1.989 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.189 4.189 5 C -0.062 4.062 6 N -0.315 5.315 7 C -0.003 4.003 8 C -0.214 4.214 9 C -0.115 4.115 10 C -0.185 4.185 11 C 0.110 3.890 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.419 5.419 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.248 4.248 21 C -0.088 4.088 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.100 0.900 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.699 11.227 -2.408 12.063 hybrid contribution -0.980 -0.317 0.846 1.332 sum 2.720 10.910 -1.563 11.352 Atomic orbital electron populations 1.21907 0.94885 1.02302 1.01191 1.20566 0.95565 0.94626 0.96127 1.21854 1.00854 0.95684 1.01377 1.21740 1.00420 1.01458 0.95272 1.21992 0.99790 0.89229 0.95225 1.60669 1.16650 1.12032 1.42130 1.20541 0.98535 0.92048 0.89212 1.18915 0.98364 0.93122 1.11012 1.20525 0.94871 0.96184 0.99925 1.21269 1.01440 0.92245 1.03593 1.17619 0.90526 0.93227 0.87678 1.19609 0.91961 0.93284 1.44510 0.90493 1.25901 0.96991 0.98881 0.92360 1.69836 1.03595 1.33929 1.34503 0.86332 0.78456 0.82426 0.79608 1.19321 1.20351 1.18630 1.20978 1.00259 0.95267 1.08289 1.20330 0.97514 0.93059 0.97863 0.93205 0.92821 0.91779 0.92789 0.92735 0.93033 0.90941 0.93839 0.93264 0.96129 0.91595 0.84016 0.92204 0.96537 0.89998 0.86581 0.90957 0.89144 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.14 37.16 0.30 -1.38 16 2 C -0.07 -0.80 0.85 -154.51 -0.13 -0.93 16 3 C -0.14 -1.37 8.47 37.16 0.31 -1.05 16 4 C -0.13 -1.61 8.32 37.16 0.31 -1.30 16 5 C 0.07 0.90 4.65 -3.82 -0.02 0.88 16 6 N -0.68 -11.10 5.70 -115.06 -0.66 -11.76 16 7 C 0.12 2.23 5.80 -4.98 -0.03 2.20 16 8 C -0.21 -4.64 5.41 -104.33 -0.56 -5.21 16 9 C -0.10 -2.24 9.67 -39.66 -0.38 -2.63 16 10 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 11 C 0.11 3.02 5.57 -106.82 -0.60 2.43 16 12 C -0.46 -12.46 9.05 -37.74 -0.34 -12.81 16 13 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 14 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 15 N -0.79 -20.65 10.95 55.55 0.61 -20.05 16 16 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 20 C -0.23 -5.71 9.80 -38.87 -0.38 -6.10 16 21 C -0.07 -1.57 9.67 -39.66 -0.38 -1.96 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.83 6.57 -51.93 -0.34 0.49 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 1.04 7.60 -51.93 -0.39 0.64 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.34 5.71 6.76 -39.29 -0.27 5.44 16 34 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -26.71 323.72 -9.31 -36.02 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.79 Total: 7.83 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: -2.33 Total: -30.69 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: -0.05 Total: -31.80 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.71 -9.31 -36.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399075499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.315 kcal (2) G-P(sol) polarization free energy of solvation -26.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds