Wall clock time and date at job start Mon Mar 30 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46980 * 2 1 4 4 C 1.52997 * 109.47018 * 239.99878 * 2 1 3 5 5 C 1.52999 * 109.46938 * 119.99567 * 2 1 3 6 6 N 1.46907 * 109.46926 * 60.00321 * 5 2 1 7 7 C 1.46897 * 110.99751 * 179.97438 * 6 5 2 8 8 C 1.50701 * 109.46848 * 179.97438 * 7 6 5 9 9 C 1.38638 * 119.74844 * 269.72835 * 8 7 6 10 10 C 1.37618 * 120.24746 * 179.72211 * 9 8 7 11 11 C 1.40714 * 119.74597 * 0.56882 * 10 9 8 12 12 C 1.41393 * 120.24755 * 179.68185 * 11 10 9 13 13 H 1.08001 * 120.00183 * 204.40530 * 12 11 10 14 14 C 1.39946 * 119.99975 * 24.40601 * 12 11 10 15 15 N 1.30821 * 119.99734 * 17.84723 * 14 12 11 16 16 Si 1.86800 * 120.00253 * 197.84996 * 14 12 11 17 17 H 1.48501 * 109.47300 * 89.99642 * 16 14 12 18 18 H 1.48504 * 109.47154 * 210.00117 * 16 14 12 19 19 H 1.48507 * 109.46892 * 329.99849 * 16 14 12 20 20 C 1.40719 * 119.50936 * 359.70489 * 11 10 9 21 21 C 1.37614 * 119.74667 * 359.97438 * 20 11 10 22 22 H 1.09004 * 109.46900 * 300.00443 * 1 2 3 23 23 H 1.09006 * 109.46978 * 59.99852 * 1 2 3 24 24 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47309 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.47386 * 299.99898 * 3 2 1 27 27 H 1.09004 * 109.47666 * 60.00026 * 3 2 1 28 28 H 1.08998 * 109.47170 * 299.99990 * 4 2 1 29 29 H 1.09006 * 109.47026 * 60.00299 * 4 2 1 30 30 H 1.09001 * 109.46979 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47560 * 299.99993 * 5 2 1 32 32 H 1.09002 * 109.46735 * 179.97438 * 5 2 1 33 33 H 1.00907 * 110.99524 * 303.95133 * 6 5 2 34 34 H 1.08998 * 109.47380 * 299.99254 * 7 6 5 35 35 H 1.08996 * 109.47452 * 60.00169 * 7 6 5 36 36 H 1.07999 * 119.87167 * 359.97330 * 9 8 7 37 37 H 1.07999 * 120.12875 * 180.27445 * 10 9 8 38 38 H 0.97006 * 119.99786 * 180.02562 * 15 14 12 39 39 H 1.08000 * 120.12718 * 179.97438 * 20 11 10 40 40 H 1.07997 * 119.87688 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.5503 -2.1062 1.2493 7 6 2.0218 -2.8312 2.4367 8 6 1.5002 -4.2446 2.4023 9 6 0.2824 -4.5431 2.9938 10 6 -0.2064 -5.8292 2.9634 11 6 0.5405 -6.8453 2.3392 12 6 0.0516 -8.1717 2.3077 13 1 0.7389 -8.9983 2.2038 14 6 -1.3230 -8.4133 2.4110 15 7 -2.1756 -7.4467 2.1876 16 14 -1.9402 -10.1161 2.8680 17 1 -2.0632 -10.2184 4.3444 18 1 -3.2679 -10.3455 2.2436 19 1 -0.9801 -11.1383 2.3793 20 6 1.7780 -6.5319 1.7471 21 6 2.2441 -5.2376 1.7837 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 -1.7489 -1.2492 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7209 -1.2494 31 1 1.6767 -0.2073 2.1392 32 1 3.1300 -0.7215 1.2490 33 1 0.5437 -2.1338 1.1843 34 1 3.1117 -2.8459 2.4445 35 1 1.6587 -2.3322 3.3351 36 1 -0.2867 -3.7625 3.4768 37 1 -1.1573 -6.0587 3.4210 38 1 -3.1284 -7.6141 2.2596 39 1 2.3597 -7.3041 1.2657 40 1 3.1933 -4.9946 1.3295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399075499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:19 Heat of formation + Delta-G solvation = -21.778694 kcal Electronic energy + Delta-G solvation = -17522.123275 eV Core-core repulsion = 14913.613444 eV Total energy + Delta-G solvation = -2608.509831 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71769 -38.83078 -36.10708 -34.75967 -31.79081 -31.11251 -28.46590 -28.14111 -28.00303 -25.92369 -24.04870 -22.86771 -21.62416 -19.65261 -19.20348 -17.32789 -16.78692 -16.13150 -15.86337 -15.69330 -15.34193 -15.26262 -14.64340 -14.29716 -14.21148 -13.79717 -13.45746 -13.34295 -13.17698 -12.91441 -12.84156 -12.65228 -12.49814 -12.45029 -12.34086 -12.03847 -11.62642 -11.55007 -11.44962 -11.27735 -11.18661 -10.99156 -9.39039 -9.25076 -9.09897 -8.62737 -6.32229 0.95799 1.17309 1.37920 1.51184 1.51984 2.21287 2.70393 3.45223 3.83305 3.90161 3.99822 4.13142 4.33316 4.36029 4.57270 4.62653 4.67350 4.72834 4.78743 4.84798 4.88444 4.92251 4.97614 5.06102 5.11177 5.15308 5.17660 5.25819 5.37286 5.39584 5.49407 5.51827 5.63233 5.72811 5.97481 6.11821 6.23300 6.29703 6.41637 6.55660 6.72145 6.95885 7.05996 8.34238 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039675 B = 0.004205 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.571396 B = 6657.451064 C = 6892.598221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.135 4.135 4 C -0.129 4.129 5 C 0.069 3.931 6 N -0.690 5.690 7 C 0.131 3.869 8 C -0.199 4.199 9 C -0.099 4.099 10 C -0.190 4.190 11 C 0.079 3.921 12 C -0.504 4.504 13 H 0.073 0.927 14 C 0.036 3.964 15 N -0.826 5.826 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.245 4.245 21 C -0.073 4.073 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.336 0.664 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.287 0.713 39 H 0.093 0.907 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 12.862 -2.029 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.067 4.067 3 C -0.193 4.193 4 C -0.186 4.186 5 C -0.060 4.060 6 N -0.322 5.322 7 C 0.003 3.997 8 C -0.201 4.201 9 C -0.118 4.118 10 C -0.209 4.209 11 C 0.077 3.923 12 C -0.534 4.534 13 H 0.091 0.909 14 C -0.179 4.179 15 N -0.452 5.452 16 Si 0.803 3.197 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.265 4.265 21 C -0.091 4.091 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.182 12.703 -2.454 13.597 hybrid contribution -1.051 -0.616 0.820 1.468 sum 3.132 12.087 -1.635 12.593 Atomic orbital electron populations 1.21895 0.94915 1.01324 1.02056 1.20570 0.95530 0.95683 0.94923 1.21807 1.01209 0.94073 1.02208 1.21703 1.00532 1.00146 0.96259 1.22063 0.99990 0.87576 0.96395 1.60600 1.16462 1.14006 1.41115 1.20460 0.99109 0.89729 0.90432 1.19352 0.97154 0.95209 1.08377 1.20776 0.95628 0.95602 0.99773 1.21245 1.01292 0.93559 1.04836 1.17958 0.91690 0.93884 0.88758 1.19847 0.93137 0.93399 1.47006 0.90889 1.26745 0.96532 1.03118 0.91515 1.69886 1.04178 1.36099 1.35005 0.85208 0.78065 0.77045 0.79390 1.18672 1.19166 1.18294 1.21178 1.00063 0.96583 1.08657 1.20636 0.98525 0.92366 0.97605 0.92615 0.91730 0.93640 0.92227 0.91763 0.92404 0.93489 0.92623 0.93013 0.95420 0.91159 0.84458 0.90980 0.95474 0.87947 0.88299 0.90207 0.88842 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.14 71.98 0.59 -2.49 16 2 C -0.07 -1.40 0.85 -52.18 -0.04 -1.44 16 3 C -0.14 -2.21 8.47 71.98 0.61 -1.60 16 4 C -0.13 -2.93 8.32 71.98 0.60 -2.33 16 5 C 0.07 1.66 4.65 86.30 0.40 2.06 16 6 N -0.69 -21.14 5.70 -517.93 -2.95 -24.09 16 7 C 0.13 4.38 5.80 85.56 0.50 4.88 16 8 C -0.20 -8.49 5.41 -19.67 -0.11 -8.60 16 9 C -0.10 -4.61 9.67 22.22 0.21 -4.40 16 10 C -0.19 -10.22 8.70 22.73 0.20 -10.02 16 11 C 0.08 4.43 5.57 -21.29 -0.12 4.31 16 12 C -0.50 -28.10 9.05 23.46 0.21 -27.89 16 13 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 14 C 0.04 1.84 5.14 85.26 0.44 2.27 16 15 N -0.83 -44.14 10.95 21.83 0.24 -43.90 16 16 Si 0.98 39.03 29.59 68.60 2.03 41.06 16 17 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 18 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 C -0.25 -12.51 9.80 22.73 0.22 -12.29 16 21 C -0.07 -3.27 9.67 22.22 0.21 -3.06 16 22 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.04 1.13 6.57 -2.39 -0.02 1.11 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.05 1.30 7.60 -2.39 -0.02 1.28 16 29 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.34 10.86 6.76 -89.69 -0.61 10.25 16 34 H 0.07 2.26 8.08 -2.39 -0.02 2.24 16 35 H 0.03 0.86 8.08 -2.39 -0.02 0.84 16 36 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 38 H 0.29 13.85 8.30 -92.70 -0.77 13.08 16 39 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -58.34 323.72 3.63 -54.71 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.39 Total: 32.82 kcal Atomic # 6 Polarization: -64.52 SS G_CDS: 3.92 Total: -60.59 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -2.71 Total: -68.00 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -58.34 3.63 -54.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399075499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.930 kcal (2) G-P(sol) polarization free energy of solvation -58.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds