Wall clock time and date at job start Mon Mar 30 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47465 * 2 1 4 4 C 1.53003 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47131 * 54.99927 * 4 3 2 6 6 C 1.52993 * 109.47279 * 175.00323 * 4 3 2 7 7 N 1.46905 * 109.46880 * 294.99897 * 4 3 2 8 8 C 1.46897 * 110.99807 * 154.99703 * 7 4 3 9 9 C 1.50705 * 109.47109 * 180.02562 * 8 7 4 10 10 C 1.38638 * 119.75039 * 269.73228 * 9 8 7 11 11 C 1.37620 * 120.24768 * 179.72098 * 10 9 8 12 12 C 1.40716 * 119.74073 * 0.57219 * 11 10 9 13 13 C 1.41395 * 120.23933 * 179.68442 * 12 11 10 14 14 H 1.08002 * 119.99674 * 155.31043 * 13 12 11 15 15 C 1.39944 * 120.00357 * 335.30447 * 13 12 11 16 16 N 1.30825 * 119.99709 * 342.23872 * 15 13 12 17 17 Si 1.86796 * 120.00101 * 162.23309 * 15 13 12 18 18 H 1.48507 * 109.46952 * 94.66930 * 17 15 13 19 19 H 1.48505 * 109.46971 * 214.66514 * 17 15 13 20 20 H 1.48499 * 109.47351 * 334.66769 * 17 15 13 21 21 C 1.40716 * 119.51598 * 359.70143 * 12 11 10 22 22 C 1.37621 * 119.74278 * 359.97438 * 21 12 11 23 23 H 1.08990 * 109.47553 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47070 * 300.00338 * 1 2 3 25 25 H 1.09008 * 109.47255 * 59.99263 * 1 2 3 26 26 H 1.08998 * 109.46722 * 120.00831 * 2 1 3 27 27 H 1.09008 * 109.46816 * 240.00129 * 2 1 3 28 28 H 1.08999 * 109.47086 * 300.00169 * 3 2 1 29 29 H 1.08998 * 109.46808 * 60.00281 * 3 2 1 30 30 H 1.08997 * 109.47219 * 299.99897 * 6 4 3 31 31 H 1.09006 * 109.47518 * 59.99733 * 6 4 3 32 32 H 1.08999 * 109.47083 * 179.97438 * 6 4 3 33 33 H 1.00893 * 111.00487 * 278.95833 * 7 4 3 34 34 H 1.08998 * 109.47653 * 300.00245 * 8 7 4 35 35 H 1.09003 * 109.47308 * 60.00510 * 8 7 4 36 36 H 1.07997 * 119.86995 * 359.97438 * 10 9 8 37 37 H 1.07996 * 120.12864 * 180.28011 * 11 10 9 38 38 H 0.96995 * 120.00004 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.12856 * 179.97438 * 21 12 11 40 40 H 1.08001 * 119.87243 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9330 0.8530 -0.8427 6 6 4.0801 2.8793 -0.1263 7 7 4.0602 0.8568 1.2544 8 6 5.4074 0.2967 1.0831 9 6 5.8755 -0.2940 2.3881 10 6 6.5738 0.4949 3.2892 11 6 7.0011 -0.0325 4.4864 12 6 6.7370 -1.3812 4.7890 13 6 7.1769 -1.9357 6.0130 14 1 6.6691 -2.7922 6.4312 15 6 8.2703 -1.3747 6.6826 16 7 9.0939 -0.5847 6.0429 17 14 8.5538 -1.7538 8.4895 18 1 9.5030 -2.8891 8.6141 19 1 9.1211 -0.5581 9.1631 20 1 7.2627 -2.1157 9.1279 21 6 6.0323 -2.1740 3.8643 22 6 5.6088 -1.6236 2.6762 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 1.8933 -0.5140 0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.7165 3.3138 -1.0574 31 1 3.7172 3.4687 0.7158 32 1 5.1701 2.8792 -0.1263 33 1 4.0428 1.5352 2.0010 34 1 5.3832 -0.4815 0.3203 35 1 6.0927 1.0864 0.7748 36 1 6.7797 1.5283 3.0525 37 1 7.5410 0.5850 5.1889 38 1 9.8515 -0.1956 6.5070 39 1 5.8247 -3.2103 4.0862 40 1 5.0682 -2.2303 1.9648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399086357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:51 Heat of formation + Delta-G solvation = -12.755495 kcal Electronic energy + Delta-G solvation = -17391.565039 eV Core-core repulsion = 14783.446483 eV Total energy + Delta-G solvation = -2608.118556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.07082 -37.01525 -34.22901 -33.28862 -31.13405 -29.29549 -28.90329 -26.64569 -25.87351 -23.07120 -21.48150 -20.98711 -20.43718 -19.75754 -17.25930 -15.62863 -15.44725 -15.03137 -14.45544 -14.02209 -14.00432 -13.58650 -13.36187 -13.04056 -12.66550 -12.45474 -12.28125 -11.95239 -11.89715 -11.66640 -11.37979 -11.25227 -11.00791 -10.94083 -10.67814 -10.61719 -10.46162 -10.44568 -10.25116 -9.51530 -9.36338 -9.09772 -7.94800 -7.40972 -7.25506 -6.74143 -4.32070 2.76829 3.07784 3.11330 3.12892 3.21064 3.94791 4.49821 4.79825 4.83455 5.15927 5.21665 5.35090 5.44277 5.57829 5.65894 5.74050 5.82464 5.86662 5.95171 5.98395 6.00919 6.05645 6.17269 6.29228 6.35470 6.42003 6.44972 6.46291 6.62233 6.97797 7.10342 7.31275 7.41464 7.50736 7.65201 7.82428 7.93929 8.08844 8.18498 8.34020 8.67247 8.92783 9.01366 10.20615 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035361 B = 0.004210 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.640046 B = 6649.866693 C = 7042.330999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.104 4.104 4 C 0.078 3.922 5 H 0.071 0.929 6 C -0.182 4.182 7 N -0.676 5.676 8 C 0.125 3.875 9 C -0.212 4.212 10 C -0.096 4.096 11 C -0.166 4.166 12 C 0.112 3.888 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.795 5.795 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.260 1.260 21 C -0.228 4.228 22 C -0.069 4.069 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.339 0.661 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.090 0.910 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 4.517 -8.376 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.142 4.142 4 C -0.032 4.032 5 H 0.090 0.910 6 C -0.241 4.241 7 N -0.307 5.307 8 C -0.003 4.003 9 C -0.214 4.214 10 C -0.115 4.115 11 C -0.185 4.185 12 C 0.110 3.890 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.420 5.420 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.248 4.248 22 C -0.088 4.088 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.100 0.900 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.679 4.041 -8.455 12.773 hybrid contribution 0.872 0.735 0.745 1.362 sum -7.807 4.776 -7.710 11.967 Atomic orbital electron populations 1.21794 0.96868 1.01142 1.01101 1.21426 0.94420 0.96924 1.02808 1.21566 0.94479 0.97156 1.00976 1.21617 0.95056 0.92898 0.93636 0.91038 1.22514 1.01367 0.98438 1.01788 1.60742 1.25648 1.38833 1.05501 1.20565 0.87205 0.96510 0.96028 1.18913 1.09766 0.95135 0.97537 1.20518 0.98922 0.96939 0.95075 1.21263 1.04578 0.95669 0.97011 1.17616 0.88762 0.91111 0.91529 1.19596 1.11891 1.13331 1.04552 0.90514 1.25901 0.94788 0.93448 0.99962 1.69833 1.10324 1.24675 1.37185 0.86344 0.79481 0.78753 0.82404 1.19613 1.20078 1.18422 1.20981 1.09830 0.98283 0.95717 1.20328 0.98231 0.94078 0.96146 0.93140 0.92989 0.93517 0.90222 0.92954 0.92705 0.92188 0.92651 0.92599 0.92765 0.84246 0.92243 0.96403 0.90006 0.86648 0.90976 0.89155 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.40 5.82 -26.73 -0.16 -1.56 16 3 C -0.10 -1.18 4.89 -26.73 -0.13 -1.31 16 4 C 0.08 0.99 2.59 -67.71 -0.18 0.81 16 5 H 0.07 0.92 7.80 -51.93 -0.40 0.52 16 6 C -0.18 -2.07 9.16 37.15 0.34 -1.73 16 7 N -0.68 -10.50 5.69 -107.99 -0.61 -11.11 16 8 C 0.12 2.19 5.60 -4.98 -0.03 2.16 16 9 C -0.21 -4.59 5.42 -104.33 -0.56 -5.16 16 10 C -0.10 -2.22 9.67 -39.66 -0.38 -2.60 16 11 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 12 C 0.11 3.03 5.57 -106.82 -0.60 2.43 16 13 C -0.46 -12.48 9.05 -37.74 -0.34 -12.82 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 15 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 16 N -0.79 -20.72 10.97 55.55 0.61 -20.11 16 17 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 C -0.23 -5.71 9.80 -38.87 -0.38 -6.09 16 22 C -0.07 -1.57 9.67 -39.66 -0.38 -1.95 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 26 H 0.08 1.13 7.75 -51.93 -0.40 0.73 16 27 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.05 0.66 7.45 -51.93 -0.39 0.27 16 33 H 0.34 5.40 8.46 -39.30 -0.33 5.07 16 34 H 0.06 1.02 7.99 -51.93 -0.42 0.61 16 35 H 0.02 0.31 7.37 -51.93 -0.38 -0.08 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.12 3.12 6.18 -52.49 -0.32 2.79 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -26.58 327.07 -9.81 -36.40 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.85 Total: 7.97 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -2.86 Total: -31.82 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: -0.01 Total: -31.22 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.58 -9.81 -36.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399086357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.642 kcal (2) G-P(sol) polarization free energy of solvation -26.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds