Wall clock time and date at job start Mon Mar 30 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47208 * 2 1 4 4 C 1.53001 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47107 * 304.99833 * 4 3 2 6 6 C 1.53001 * 109.47381 * 185.00261 * 4 3 2 7 7 N 1.46894 * 109.47295 * 64.99999 * 4 3 2 8 8 C 1.46905 * 111.00172 * 205.00441 * 7 4 3 9 9 C 1.50696 * 109.46830 * 179.97438 * 8 7 4 10 10 C 1.38641 * 119.75187 * 269.72234 * 9 8 7 11 11 C 1.37618 * 120.24842 * 179.72254 * 10 9 8 12 12 C 1.40712 * 119.74526 * 0.57825 * 11 10 9 13 13 C 1.41396 * 120.24544 * 179.68091 * 12 11 10 14 14 H 1.08000 * 119.99877 * 24.39862 * 13 12 11 15 15 C 1.39944 * 120.00042 * 204.40136 * 13 12 11 16 16 N 1.30821 * 119.99947 * 17.86453 * 15 13 12 17 17 Si 1.86801 * 119.99893 * 197.86325 * 15 13 12 18 18 H 1.48498 * 109.47053 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47066 * 120.00398 * 17 15 13 20 20 H 1.48498 * 109.46963 * 239.99943 * 17 15 13 21 21 C 1.40717 * 119.51165 * 359.70039 * 12 11 10 22 22 C 1.37617 * 119.74452 * 359.97438 * 21 12 11 23 23 H 1.09004 * 109.47077 * 300.00269 * 1 2 3 24 24 H 1.09007 * 109.46769 * 59.99692 * 1 2 3 25 25 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46677 * 239.99746 * 2 1 3 27 27 H 1.08998 * 109.46919 * 120.00097 * 2 1 3 28 28 H 1.09004 * 109.47321 * 59.99881 * 3 2 1 29 29 H 1.08998 * 109.47260 * 299.99888 * 3 2 1 30 30 H 1.09005 * 109.46651 * 299.99852 * 6 4 3 31 31 H 1.09004 * 109.47320 * 59.99553 * 6 4 3 32 32 H 1.09003 * 109.46891 * 179.97438 * 6 4 3 33 33 H 1.00895 * 111.00391 * 81.04375 * 7 4 3 34 34 H 1.08998 * 109.46646 * 299.99927 * 8 7 4 35 35 H 1.08999 * 109.47177 * 59.99884 * 8 7 4 36 36 H 1.08001 * 119.87078 * 359.97438 * 10 9 8 37 37 H 1.08003 * 120.12498 * 180.27811 * 11 10 9 38 38 H 0.96998 * 120.00127 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.12762 * 179.97438 * 21 12 11 40 40 H 1.08007 * 119.87585 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 6 4.0801 2.8794 0.1251 7 7 4.0592 0.8573 -1.2561 8 6 5.4066 0.2972 -1.0861 9 6 5.8735 -0.2931 -2.3917 10 6 5.6122 -1.6243 -2.6774 11 6 6.0289 -2.1724 -3.8689 12 6 6.7332 -1.3794 -4.7936 13 6 7.1722 -1.9335 -6.0182 14 1 6.6670 -2.7927 -6.4340 15 6 8.2613 -1.3685 -6.6914 16 7 9.0843 -0.5758 -6.0544 17 14 8.5399 -1.7465 -8.4994 18 1 7.4759 -2.6623 -8.9833 19 1 8.4994 -0.4844 -9.2809 20 1 9.8658 -2.3927 -8.6714 21 6 6.9979 -0.0310 -4.4905 22 6 6.5658 0.4978 -3.2957 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7164 3.4690 -0.7165 31 1 3.7172 3.3136 1.0567 32 1 5.1702 2.8793 0.1251 33 1 4.0412 1.5359 -2.0025 34 1 6.0920 1.0868 -0.7781 35 1 5.3829 -0.4813 -0.3236 36 1 5.0760 -2.2324 -1.9638 37 1 5.8203 -3.2085 -4.0914 38 1 9.8393 -0.1845 -6.5209 39 1 7.5381 0.5866 -5.1928 40 1 6.7674 1.5326 -3.0611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399086360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:53 Heat of formation + Delta-G solvation = -25.640017 kcal Electronic energy + Delta-G solvation = -17392.492538 eV Core-core repulsion = 14783.815268 eV Total energy + Delta-G solvation = -2608.677271 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.68325 -38.37046 -35.84665 -34.63302 -32.57619 -31.16266 -30.46305 -27.70632 -27.38507 -24.70631 -22.87519 -22.42306 -21.69935 -21.32242 -19.20438 -17.25515 -16.64346 -16.48597 -15.90569 -15.65446 -15.19807 -15.03081 -14.72697 -14.32516 -14.08313 -13.78923 -13.61026 -13.48120 -13.22541 -12.91868 -12.90619 -12.68825 -12.57046 -12.35019 -12.16249 -11.98959 -11.60897 -11.50982 -11.36942 -11.28087 -11.21273 -10.99134 -9.37691 -9.23423 -9.06407 -8.63049 -6.31935 0.95830 1.17658 1.37941 1.50049 1.53543 2.21389 2.70808 3.45901 3.83136 3.90144 4.21557 4.26056 4.33804 4.38740 4.46216 4.54882 4.64600 4.67294 4.71774 4.82959 4.84263 5.01667 5.05407 5.06376 5.12072 5.13036 5.18117 5.29943 5.38797 5.41341 5.50043 5.52030 5.66461 5.73277 5.98539 6.12328 6.25286 6.32982 6.42064 6.60973 6.72546 6.96171 7.06298 8.34233 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035319 B = 0.004211 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.595255 B = 6648.389194 C = 7039.780909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.099 4.099 4 C 0.079 3.921 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.682 5.682 8 C 0.133 3.867 9 C -0.198 4.198 10 C -0.073 4.073 11 C -0.246 4.246 12 C 0.079 3.921 13 C -0.504 4.504 14 H 0.072 0.928 15 C 0.036 3.964 16 N -0.827 5.827 17 Si 0.982 3.018 18 H -0.259 1.259 19 H -0.264 1.264 20 H -0.265 1.265 21 C -0.190 4.190 22 C -0.098 4.098 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.337 0.663 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.287 0.713 39 H 0.099 0.901 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.497 5.282 9.513 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.137 4.137 4 C -0.031 4.031 5 H 0.091 0.909 6 C -0.236 4.236 7 N -0.313 5.313 8 C 0.005 3.995 9 C -0.199 4.199 10 C -0.092 4.092 11 C -0.265 4.265 12 C 0.077 3.923 13 C -0.534 4.534 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.453 5.453 17 Si 0.802 3.198 18 H -0.183 1.183 19 H -0.188 1.188 20 H -0.190 1.190 21 C -0.209 4.209 22 C -0.117 4.117 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.155 0.845 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.600 4.806 9.615 14.412 hybrid contribution 1.074 0.539 -0.926 1.517 sum -8.526 5.345 8.689 13.296 Atomic orbital electron populations 1.21767 0.95629 1.01515 1.01729 1.21387 0.95568 0.97008 1.01544 1.21540 0.93423 0.96937 1.01777 1.21689 0.95826 0.93562 0.91993 0.90910 1.22452 1.00771 0.97510 1.02872 1.60666 1.24111 1.39545 1.06985 1.20442 0.88479 0.96987 0.93577 1.19357 1.07588 0.94515 0.98482 1.20633 0.97916 0.94918 0.95702 1.21176 1.10301 0.98575 0.96461 1.17960 0.89983 0.91916 0.92476 1.19858 1.13609 1.14181 1.05711 0.90956 1.26740 0.93817 0.92966 1.04362 1.69884 1.10999 1.25440 1.38982 0.85174 0.78990 0.79290 0.76329 1.18290 1.18817 1.18981 1.21246 1.05890 0.95544 0.98248 1.20768 0.98454 0.98129 0.94353 0.92059 0.93158 0.92978 0.92909 0.92753 0.90614 0.92585 0.92515 0.90742 0.93592 0.84537 0.95558 0.91363 0.87098 0.88893 0.90214 0.88341 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.91 71.98 0.71 -2.03 16 2 C -0.12 -2.56 5.82 30.59 0.18 -2.38 16 3 C -0.10 -1.99 4.89 30.59 0.15 -1.84 16 4 C 0.08 1.78 2.59 44.92 0.12 1.90 16 5 H 0.07 1.66 7.80 -2.38 -0.02 1.64 16 6 C -0.18 -3.52 9.16 71.98 0.66 -2.86 16 7 N -0.68 -19.84 5.69 -495.58 -2.82 -22.66 16 8 C 0.13 4.40 5.60 85.55 0.48 4.88 16 9 C -0.20 -8.37 5.42 -19.67 -0.11 -8.48 16 10 C -0.07 -3.28 9.67 22.22 0.21 -3.07 16 11 C -0.25 -12.53 9.80 22.73 0.22 -12.31 16 12 C 0.08 4.41 5.58 -21.29 -0.12 4.29 16 13 C -0.50 -28.13 9.05 23.46 0.21 -27.92 16 14 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 15 C 0.04 1.84 5.14 85.26 0.44 2.28 16 16 N -0.83 -44.20 10.95 21.83 0.24 -43.96 16 17 Si 0.98 39.08 29.60 68.60 2.03 41.11 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 21 C -0.19 -10.21 8.70 22.73 0.20 -10.01 16 22 C -0.10 -4.56 9.67 22.22 0.21 -4.34 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 1.43 7.75 -2.39 -0.02 1.42 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.12 8.13 -2.38 -0.02 1.10 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 0.99 7.45 -2.39 -0.02 0.97 16 33 H 0.34 10.15 8.46 -89.70 -0.76 9.39 16 34 H 0.03 0.83 7.38 -2.39 -0.02 0.82 16 35 H 0.07 2.16 7.99 -2.39 -0.02 2.14 16 36 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 38 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 39 H 0.10 5.55 6.15 -2.91 -0.02 5.53 16 40 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -58.28 327.04 3.26 -55.03 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.23 Total: 32.38 kcal Atomic # 6 Polarization: -65.46 SS G_CDS: 3.57 Total: -61.89 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -2.58 Total: -66.62 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -58.28 3.26 -55.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399086360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.388 kcal (2) G-P(sol) polarization free energy of solvation -58.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds