Wall clock time and date at job start Mon Mar 30 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47016 * 2 1 4 4 C 1.52995 * 109.47528 * 120.00037 * 2 1 3 5 5 C 1.50706 * 109.46956 * 64.99785 * 4 2 1 6 6 C 1.38256 * 120.00066 * 264.72716 * 5 4 2 7 7 C 1.38219 * 119.99727 * 179.74209 * 6 5 4 8 8 C 1.38257 * 119.99883 * 0.55526 * 7 6 5 9 9 C 1.38216 * 120.00107 * 359.69856 * 8 7 6 10 10 C 1.38220 * 119.99654 * 85.00068 * 5 4 2 11 11 C 1.50699 * 119.99880 * 0.02562 * 10 5 4 12 12 N 1.46897 * 109.47562 * 79.99666 * 11 10 5 13 13 C 1.46894 * 111.00488 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47482 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99892 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00411 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99736 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00311 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47133 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46858 * 120.00132 * 18 16 14 21 21 H 1.48508 * 109.47224 * 239.99703 * 18 16 14 22 22 H 1.08999 * 109.47109 * 299.99567 * 1 2 3 23 23 H 1.08997 * 109.47027 * 59.99802 * 1 2 3 24 24 H 1.09005 * 109.46868 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47109 * 240.00433 * 2 1 3 26 26 H 1.08994 * 109.47635 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47168 * 300.00570 * 3 2 1 28 28 H 1.09003 * 109.47307 * 60.00231 * 3 2 1 29 29 H 1.08999 * 109.46886 * 305.00533 * 4 2 1 30 30 H 1.08999 * 109.47559 * 184.99764 * 4 2 1 31 31 H 1.07998 * 120.00433 * 0.02562 * 6 5 4 32 32 H 1.07999 * 119.99964 * 180.27303 * 7 6 5 33 33 H 1.08001 * 120.00211 * 179.72081 * 8 7 6 34 34 H 1.08000 * 120.00535 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.47063 * 199.99711 * 11 10 5 36 36 H 1.09001 * 109.47325 * 319.99638 * 11 10 5 37 37 H 1.00903 * 111.00154 * 303.95427 * 12 11 10 38 38 H 1.08999 * 109.47409 * 300.00770 * 13 12 11 39 39 H 1.09002 * 109.46873 * 60.00432 * 13 12 11 40 40 H 0.97003 * 120.00470 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1888 6 6 0.4890 -2.6007 1.8219 7 6 0.1206 -3.9315 1.7620 8 6 0.9105 -4.8374 1.0787 9 6 2.0653 -4.4111 0.4502 10 6 2.4309 -3.0789 0.5053 11 6 3.6905 -2.6142 -0.1791 12 7 4.7660 -2.4808 0.8126 13 6 6.0125 -2.0291 0.1800 14 6 7.0903 -1.9048 1.2258 15 1 6.8714 -2.1385 2.2572 16 6 8.3559 -1.4929 0.8660 17 7 8.6223 -1.2078 -0.3900 18 14 9.6921 -1.3395 2.1623 19 1 9.1403 -1.7150 3.4888 20 1 10.8194 -2.2438 1.8205 21 1 10.1788 0.0628 2.2081 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6055 -0.2618 2.1369 30 1 3.1264 -0.6443 1.2951 31 1 -0.1257 -1.8939 2.3594 32 1 -0.7819 -4.2646 2.2529 33 1 0.6250 -5.8781 1.0357 34 1 2.6827 -5.1187 -0.0832 35 1 3.9825 -3.3421 -0.9361 36 1 3.5117 -1.6490 -0.6531 37 1 4.4939 -1.8600 1.5600 38 1 6.3203 -2.7532 -0.5743 39 1 5.8500 -1.0600 -0.2917 40 1 9.5128 -0.9183 -0.6433 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530236314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:10 Heat of formation + Delta-G solvation = -2.890817 kcal Electronic energy + Delta-G solvation = -17894.606068 eV Core-core repulsion = 15286.915277 eV Total energy + Delta-G solvation = -2607.690791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.66118 -36.11472 -35.26045 -32.68624 -31.18490 -30.77390 -27.14521 -27.11594 -26.23480 -24.15697 -21.79851 -21.51521 -20.63347 -19.73313 -16.65467 -16.01505 -15.75176 -15.10826 -14.59066 -14.35546 -14.25376 -13.98229 -13.46537 -13.28487 -13.04741 -12.44506 -12.22452 -12.13262 -12.11908 -11.76307 -11.45121 -11.40738 -11.19057 -10.90644 -10.78203 -10.69636 -10.61340 -10.42137 -10.32800 -9.89966 -9.18144 -8.56931 -8.48583 -8.33709 -7.26814 -6.03199 -4.05031 1.58106 1.63468 3.31243 3.38532 3.44054 3.96436 4.44262 4.84428 4.91628 5.03484 5.10297 5.17625 5.20718 5.32842 5.34960 5.54875 5.56597 5.65481 5.72216 5.74945 5.82335 5.87343 6.01110 6.01396 6.05730 6.13417 6.18491 6.29474 6.37070 6.40731 6.49143 6.69643 6.75720 6.99580 7.22260 7.26713 7.41450 7.78866 8.12281 8.39402 8.60541 9.04561 9.60035 11.07899 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.005575 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.248981 B = 5021.000604 C = 5789.360182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.082 4.082 5 C -0.072 4.072 6 C -0.119 4.119 7 C -0.129 4.129 8 C -0.128 4.128 9 C -0.103 4.103 10 C -0.063 4.063 11 C 0.091 3.909 12 N -0.682 5.682 13 C 0.193 3.807 14 C -0.513 4.513 15 H 0.062 0.938 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.328 0.672 38 H 0.028 0.972 39 H -0.013 1.013 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.590 -0.083 1.320 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.119 4.119 5 C -0.073 4.073 6 C -0.137 4.137 7 C -0.148 4.148 8 C -0.146 4.146 9 C -0.121 4.121 10 C -0.063 4.063 11 C -0.038 4.038 12 N -0.314 5.314 13 C 0.067 3.933 14 C -0.551 4.551 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.146 0.854 38 H 0.046 0.954 39 H 0.005 0.995 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.244 -0.680 1.168 17.297 hybrid contribution 0.623 0.931 0.423 1.198 sum -16.620 0.251 1.590 16.698 Atomic orbital electron populations 1.21881 0.95452 1.01856 1.01154 1.21078 0.95669 0.95979 0.98224 1.21851 1.01654 0.95685 1.01371 1.20755 1.01959 0.91089 0.98099 1.19724 0.94773 0.95374 0.97413 1.20933 0.96725 0.95710 1.00305 1.21011 0.99840 0.93577 1.00334 1.21059 0.95521 0.99203 0.98831 1.21049 0.96321 0.95269 0.99479 1.19900 0.95728 0.93235 0.97477 1.20916 0.88822 0.99294 0.94777 1.60774 1.03310 1.55892 1.11406 1.19581 0.85194 0.93565 0.94970 1.21216 0.94733 1.44311 0.94870 0.91935 1.24981 0.98642 0.95443 0.95466 1.69974 1.21367 1.46230 1.16183 0.86439 0.81645 0.77541 0.81785 1.19642 1.20977 1.21089 0.92991 0.93133 0.92357 0.90980 0.92181 0.92855 0.92827 0.91245 0.90366 0.86657 0.86745 0.86611 0.86141 0.91166 0.94948 0.85378 0.95383 0.99545 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.84 37.16 0.33 -1.23 16 2 C -0.09 -1.13 2.71 -90.62 -0.25 -1.38 16 3 C -0.15 -1.76 9.19 37.16 0.34 -1.42 16 4 C -0.08 -1.11 4.15 -27.88 -0.12 -1.22 16 5 C -0.07 -1.04 4.55 -104.62 -0.48 -1.52 16 6 C -0.12 -1.51 8.38 -39.58 -0.33 -1.84 16 7 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 8 C -0.13 -1.65 10.05 -39.58 -0.40 -2.04 16 9 C -0.10 -1.52 9.67 -39.58 -0.38 -1.90 16 10 C -0.06 -1.01 5.39 -104.62 -0.56 -1.57 16 11 C 0.09 1.67 5.07 -4.98 -0.03 1.64 16 12 N -0.68 -14.95 6.46 -116.35 -0.75 -15.70 16 13 C 0.19 5.10 5.44 -4.98 -0.03 5.08 16 14 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 15 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 18 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.65 6.53 -51.93 -0.34 0.31 16 25 H 0.07 0.99 6.83 -51.93 -0.35 0.64 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 30 H 0.08 1.23 5.43 -51.93 -0.28 0.95 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.12 1.70 8.04 -52.49 -0.42 1.28 16 35 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 36 H 0.03 0.59 5.90 -51.93 -0.31 0.28 16 37 H 0.33 6.96 6.88 -39.29 -0.27 6.69 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 39 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -29.99 321.83 -9.48 -39.47 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.58 Total: 3.61 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -2.71 Total: -22.85 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: -0.02 Total: -41.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.99 -9.48 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530236314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.575 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds