Wall clock time and date at job start Mon Mar 30 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99833 * 2 1 4 4 C 1.52997 * 109.47254 * 293.95613 * 3 2 1 5 5 C 1.50693 * 109.47564 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99753 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00524 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00159 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00187 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46999 * 60.00497 * 9 7 5 11 11 H 1.48506 * 109.47202 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47481 * 300.00563 * 9 7 5 13 13 C 1.46894 * 110.99914 * 123.95307 * 2 1 3 14 14 C 1.52995 * 109.47377 * 302.66927 * 13 2 1 15 15 C 1.53000 * 109.46911 * 182.67121 * 13 2 1 16 16 C 1.50704 * 109.47133 * 62.67246 * 13 2 1 17 17 C 1.38231 * 120.00144 * 25.78658 * 16 13 2 18 18 C 1.38234 * 120.00274 * 179.97438 * 17 16 13 19 19 C 1.38232 * 119.99920 * 359.97438 * 18 17 16 20 20 C 1.38239 * 119.99921 * 0.27679 * 19 18 17 21 21 C 1.38236 * 119.99798 * 205.76239 * 16 13 2 22 22 H 1.08993 * 109.47379 * 302.46705 * 1 2 3 23 23 H 1.09000 * 109.47517 * 62.47354 * 1 2 3 24 24 H 1.09006 * 109.46996 * 182.46919 * 1 2 3 25 25 H 1.08998 * 109.46680 * 53.95104 * 3 2 1 26 26 H 1.08999 * 109.46825 * 173.95323 * 3 2 1 27 27 H 1.09005 * 109.47083 * 300.00032 * 4 3 2 28 28 H 1.09002 * 109.47216 * 59.99613 * 4 3 2 29 29 H 0.96999 * 120.00663 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47624 * 180.02562 * 14 13 2 31 31 H 1.08998 * 109.47064 * 300.00293 * 14 13 2 32 32 H 1.09002 * 109.46932 * 60.00003 * 14 13 2 33 33 H 1.09005 * 109.47225 * 299.99836 * 15 13 2 34 34 H 1.08998 * 109.47474 * 60.00383 * 15 13 2 35 35 H 1.09002 * 109.47392 * 179.97438 * 15 13 2 36 36 H 1.08008 * 119.99658 * 359.97319 * 17 16 13 37 37 H 1.07999 * 120.00252 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.00105 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.00379 * 179.72376 * 20 19 18 40 40 H 1.08000 * 120.00196 * 0.02562 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1708 3.4646 -1.3180 6 1 2.7182 3.8329 -0.4629 7 6 1.9656 4.2818 -2.4093 8 7 1.2986 3.8335 -3.4504 9 14 2.6337 6.0262 -2.4087 10 1 4.1108 5.9905 -2.2601 11 1 2.2804 6.6921 -3.6882 12 1 2.0406 6.7831 -1.2771 13 6 1.9954 -0.7659 1.1376 14 6 1.4513 -0.1805 2.4422 15 6 3.5234 -0.6877 1.1417 16 6 1.5664 -2.2055 1.0155 17 6 1.2835 -2.7393 -0.2278 18 6 0.8905 -4.0599 -0.3399 19 6 0.7811 -4.8468 0.7913 20 6 1.0591 -4.3115 2.0352 21 6 1.4565 -2.9922 2.1468 22 1 -0.3634 0.5516 0.8670 23 1 -0.3634 0.4749 -0.9113 24 1 -0.3633 -1.0268 0.0443 25 1 1.5610 1.9273 0.8309 26 1 3.0797 1.3444 0.1083 27 1 2.0657 1.5016 -2.1492 28 1 0.5471 2.0845 -1.4265 29 1 1.1539 4.4085 -4.2180 30 1 1.8422 -0.7486 3.2863 31 1 1.7615 0.8606 2.5304 32 1 0.3627 -0.2362 2.4392 33 1 3.9111 -1.1048 0.2122 34 1 3.8337 0.3535 1.2300 35 1 3.9141 -1.2556 1.9860 36 1 1.3694 -2.1245 -1.1117 37 1 0.6690 -4.4768 -1.3112 38 1 0.4745 -5.8786 0.7038 39 1 0.9693 -4.9250 2.9195 40 1 1.6775 -2.5751 3.1182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585754741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:16 Heat of formation + Delta-G solvation = 26.238410 kcal Electronic energy + Delta-G solvation = -18228.979095 eV Core-core repulsion = 15622.551442 eV Total energy + Delta-G solvation = -2606.427653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.97483 -37.51319 -33.64470 -32.23046 -30.81874 -29.64752 -29.26225 -27.25254 -25.28716 -24.08679 -22.62693 -22.15520 -20.33281 -18.49711 -16.88059 -16.36216 -15.47224 -14.95701 -14.55979 -14.37065 -14.17276 -14.03737 -13.55493 -13.32944 -12.94425 -12.48780 -12.17235 -12.03332 -11.80486 -11.68831 -11.60244 -11.21828 -11.05300 -10.90939 -10.84977 -10.73911 -10.52878 -10.29698 -9.70481 -9.33666 -9.09463 -8.75891 -8.51018 -8.30292 -7.65043 -5.97406 -3.99682 1.49234 1.56299 3.34381 3.38888 3.41046 3.93178 4.36113 4.54034 4.80445 5.05137 5.09061 5.25085 5.31187 5.36296 5.38508 5.59704 5.70850 5.73470 5.81234 5.89608 5.98805 6.04705 6.07122 6.16667 6.23416 6.28047 6.35734 6.46438 6.52723 6.59518 6.61763 6.70387 6.84824 7.04717 7.16511 7.56511 7.63358 7.83371 7.93881 8.11467 8.46448 9.07549 9.63778 11.13928 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041594 B = 0.004817 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.011626 B = 5811.249157 C = 6134.278684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.527 5.527 3 C 0.057 3.943 4 C 0.029 3.971 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.141 3.859 14 C -0.178 4.178 15 C -0.137 4.137 16 C -0.061 4.061 17 C -0.093 4.093 18 C -0.127 4.127 19 C -0.130 4.130 20 C -0.128 4.128 21 C -0.122 4.122 22 H 0.021 0.979 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.021 0.979 26 H 0.067 0.933 27 H 0.023 0.977 28 H 0.016 0.984 29 H 0.261 0.739 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 -14.565 10.374 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.251 5.251 3 C -0.069 4.069 4 C -0.008 4.008 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.051 3.949 14 C -0.237 4.237 15 C -0.195 4.195 16 C -0.061 4.061 17 C -0.111 4.111 18 C -0.145 4.145 19 C -0.148 4.148 20 C -0.146 4.146 21 C -0.140 4.140 22 H 0.040 0.960 23 H 0.095 0.905 24 H 0.077 0.923 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.226 -14.728 9.753 17.666 hybrid contribution -0.025 1.374 0.703 1.544 sum -0.252 -13.354 10.456 16.962 Atomic orbital electron populations 1.22447 0.88219 1.00687 1.01314 1.62307 1.07474 1.15904 1.39380 1.22475 0.99084 0.85057 1.00324 1.19075 0.96858 0.93917 0.90974 1.21157 1.35189 0.97865 1.01829 0.92942 1.24976 0.95307 0.98361 0.95579 1.69959 1.40804 1.36469 1.06028 0.86681 0.79445 0.84818 0.77167 1.20244 1.21296 1.20347 1.19912 0.95254 0.89868 0.89872 1.22523 1.01591 1.01644 0.97940 1.21934 0.93135 1.02455 1.01944 1.19835 0.98142 0.94944 0.93224 1.21288 0.96842 0.94591 0.98355 1.21204 1.00522 0.94420 0.98355 1.21083 1.01284 0.99515 0.92930 1.21022 1.00878 0.95400 0.97308 1.21055 1.00687 0.94013 0.98238 0.96048 0.90542 0.92325 0.96085 0.91441 0.95827 0.96566 0.92984 0.92434 0.91885 0.92288 0.91668 0.91428 0.92810 0.84373 0.86379 0.86742 0.86665 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.09 60.06 0.49 0.86 16 2 N -0.53 -9.43 3.57 -228.51 -0.82 -10.24 16 3 C 0.06 1.19 4.08 -3.82 -0.02 1.17 16 4 C 0.03 0.76 4.89 -27.89 -0.14 0.62 16 5 C -0.52 -14.75 9.11 -34.45 -0.31 -15.07 16 6 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.14 2.11 0.55 -132.76 -0.07 2.04 16 14 C -0.18 -2.45 7.18 37.16 0.27 -2.18 16 15 C -0.14 -1.97 8.03 37.16 0.30 -1.67 16 16 C -0.06 -0.86 3.96 -104.62 -0.41 -1.27 16 17 C -0.09 -1.32 7.82 -39.59 -0.31 -1.63 16 18 C -0.13 -1.57 10.05 -39.59 -0.40 -1.97 16 19 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 20 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 21 C -0.12 -1.50 9.15 -39.58 -0.36 -1.86 16 22 H 0.02 0.36 6.61 -51.93 -0.34 0.02 16 23 H 0.08 1.45 6.59 -51.93 -0.34 1.11 16 24 H 0.06 0.92 5.97 -51.93 -0.31 0.61 16 25 H 0.02 0.44 6.95 -51.93 -0.36 0.08 16 26 H 0.07 1.38 5.64 -51.93 -0.29 1.09 16 27 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.02 0.44 6.61 -51.93 -0.34 0.10 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.06 0.67 6.51 -51.93 -0.34 0.33 16 31 H 0.06 0.92 6.80 -51.93 -0.35 0.57 16 32 H 0.06 0.82 6.51 -51.93 -0.34 0.49 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.01 6.11 -51.93 -0.32 0.69 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.14 2.16 7.16 -52.48 -0.38 1.79 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 1.29 6.30 -52.49 -0.33 0.96 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -29.72 308.60 -8.44 -38.16 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.12 Total: 0.02 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -1.87 Total: -23.07 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.08 Total: -36.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.72 -8.44 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585754741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.395 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds