Wall clock time and date at job start Mon Mar 30 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99833 * 2 1 4 4 C 1.52997 * 109.47254 * 293.95613 * 3 2 1 5 5 C 1.50693 * 109.47564 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99753 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00524 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00159 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00187 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46999 * 60.00497 * 9 7 5 11 11 H 1.48506 * 109.47202 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47481 * 300.00563 * 9 7 5 13 13 C 1.46894 * 110.99914 * 123.95307 * 2 1 3 14 14 C 1.52995 * 109.47377 * 302.66927 * 13 2 1 15 15 C 1.53000 * 109.46911 * 182.67121 * 13 2 1 16 16 C 1.50704 * 109.47133 * 62.67246 * 13 2 1 17 17 C 1.38231 * 120.00144 * 25.78658 * 16 13 2 18 18 C 1.38234 * 120.00274 * 179.97438 * 17 16 13 19 19 C 1.38232 * 119.99920 * 359.97438 * 18 17 16 20 20 C 1.38239 * 119.99921 * 0.27679 * 19 18 17 21 21 C 1.38236 * 119.99798 * 205.76239 * 16 13 2 22 22 H 1.08993 * 109.47379 * 302.46705 * 1 2 3 23 23 H 1.09000 * 109.47517 * 62.47354 * 1 2 3 24 24 H 1.09006 * 109.46996 * 182.46919 * 1 2 3 25 25 H 1.08998 * 109.46680 * 53.95104 * 3 2 1 26 26 H 1.08999 * 109.46825 * 173.95323 * 3 2 1 27 27 H 1.09005 * 109.47083 * 300.00032 * 4 3 2 28 28 H 1.09002 * 109.47216 * 59.99613 * 4 3 2 29 29 H 0.96999 * 120.00663 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47624 * 180.02562 * 14 13 2 31 31 H 1.08998 * 109.47064 * 300.00293 * 14 13 2 32 32 H 1.09002 * 109.46932 * 60.00003 * 14 13 2 33 33 H 1.09005 * 109.47225 * 299.99836 * 15 13 2 34 34 H 1.08998 * 109.47474 * 60.00383 * 15 13 2 35 35 H 1.09002 * 109.47392 * 179.97438 * 15 13 2 36 36 H 1.08008 * 119.99658 * 359.97319 * 17 16 13 37 37 H 1.07999 * 120.00252 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.00105 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.00379 * 179.72376 * 20 19 18 40 40 H 1.08000 * 120.00196 * 0.02562 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1708 3.4646 -1.3180 6 1 2.7182 3.8329 -0.4629 7 6 1.9656 4.2818 -2.4093 8 7 1.2986 3.8335 -3.4504 9 14 2.6337 6.0262 -2.4087 10 1 4.1108 5.9905 -2.2601 11 1 2.2804 6.6921 -3.6882 12 1 2.0406 6.7831 -1.2771 13 6 1.9954 -0.7659 1.1376 14 6 1.4513 -0.1805 2.4422 15 6 3.5234 -0.6877 1.1417 16 6 1.5664 -2.2055 1.0155 17 6 1.2835 -2.7393 -0.2278 18 6 0.8905 -4.0599 -0.3399 19 6 0.7811 -4.8468 0.7913 20 6 1.0591 -4.3115 2.0352 21 6 1.4565 -2.9922 2.1468 22 1 -0.3634 0.5516 0.8670 23 1 -0.3634 0.4749 -0.9113 24 1 -0.3633 -1.0268 0.0443 25 1 1.5610 1.9273 0.8309 26 1 3.0797 1.3444 0.1083 27 1 2.0657 1.5016 -2.1492 28 1 0.5471 2.0845 -1.4265 29 1 1.1539 4.4085 -4.2180 30 1 1.8422 -0.7486 3.2863 31 1 1.7615 0.8606 2.5304 32 1 0.3627 -0.2362 2.4392 33 1 3.9111 -1.1048 0.2122 34 1 3.8337 0.3535 1.2300 35 1 3.9141 -1.2556 1.9860 36 1 1.3694 -2.1245 -1.1117 37 1 0.6690 -4.4768 -1.3112 38 1 0.4745 -5.8786 0.7038 39 1 0.9693 -4.9250 2.9195 40 1 1.6775 -2.5751 3.1182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585754741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:16 Heat of formation + Delta-G solvation = 10.136171 kcal Electronic energy + Delta-G solvation = -18229.677340 eV Core-core repulsion = 15622.551442 eV Total energy + Delta-G solvation = -2607.125899 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.11072 -38.70788 -35.52516 -33.87113 -31.87920 -31.05066 -30.65197 -28.49204 -26.97906 -25.63953 -23.99290 -23.13243 -21.91955 -19.81402 -18.55357 -17.78141 -16.85683 -16.46977 -16.08914 -15.71522 -15.48829 -15.27643 -14.73015 -14.45291 -14.28787 -14.01031 -13.82578 -13.30236 -13.25167 -13.03932 -12.88698 -12.70909 -12.64747 -12.46527 -12.31838 -12.14742 -11.76567 -11.68491 -11.43843 -11.24872 -11.14442 -10.51416 -9.70383 -9.49829 -9.09594 -8.18592 -6.29873 0.54234 0.61046 1.40196 1.43439 1.51254 2.40877 2.95300 3.08827 3.14794 3.70938 4.05085 4.16669 4.23412 4.26537 4.32014 4.40255 4.42941 4.64845 4.65986 4.71999 4.75751 4.77217 4.89624 4.90633 4.94120 5.05313 5.07677 5.20809 5.27553 5.29430 5.35450 5.48297 5.63420 5.70813 5.74757 5.78298 5.86247 6.13137 6.22083 6.37552 6.41235 6.87539 7.39145 8.93381 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041594 B = 0.004817 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.011626 B = 5811.249157 C = 6134.278684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.537 5.537 3 C 0.076 3.924 4 C 0.038 3.962 5 C -0.544 4.544 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.139 3.861 14 C -0.173 4.173 15 C -0.135 4.135 16 C -0.074 4.074 17 C -0.115 4.115 18 C -0.134 4.134 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.124 4.124 22 H 0.025 0.975 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.021 0.979 26 H 0.071 0.929 27 H -0.011 1.011 28 H -0.009 1.009 29 H 0.263 0.737 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 -15.525 12.603 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.261 5.261 3 C -0.051 4.051 4 C 0.000 4.000 5 C -0.582 4.582 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.050 3.950 14 C -0.231 4.231 15 C -0.192 4.192 16 C -0.075 4.075 17 C -0.134 4.134 18 C -0.152 4.152 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.142 4.142 22 H 0.044 0.956 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.039 0.961 26 H 0.090 0.910 27 H 0.008 0.992 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.245 -15.702 12.000 19.764 hybrid contribution -0.197 1.548 0.000 1.560 sum 0.048 -14.155 12.000 18.557 Atomic orbital electron populations 1.22318 0.88017 1.01377 0.99993 1.62171 1.07746 1.14185 1.41957 1.22078 0.99319 0.86513 0.97168 1.18899 0.94830 0.93617 0.92613 1.21598 1.35358 0.98981 1.02270 0.92204 1.25946 0.95412 1.03179 0.95033 1.70107 1.42038 1.38299 1.06781 0.85509 0.79134 0.78948 0.77495 1.19089 1.20875 1.19192 1.20007 0.95519 0.90308 0.89170 1.22468 1.01380 1.01242 0.98048 1.21920 0.92808 1.02156 1.02351 1.19762 0.99483 0.94376 0.93869 1.21180 0.98895 0.95521 0.97777 1.21393 1.00255 0.93776 0.99748 1.21436 1.00115 1.00635 0.92442 1.21409 0.99301 0.95154 0.98397 1.21259 1.00333 0.94448 0.98161 0.95613 0.93360 0.90704 0.96101 0.91045 0.99213 0.99032 0.92826 0.89655 0.93024 0.92593 0.93055 0.92337 0.90201 0.87011 0.85230 0.84009 0.83667 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 8.09 127.69 1.03 2.14 16 2 N -0.54 -19.80 3.57 -876.88 -3.13 -22.93 16 3 C 0.08 3.28 4.08 86.30 0.35 3.63 16 4 C 0.04 2.06 4.89 29.84 0.15 2.21 16 5 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 6 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 7 C 0.00 0.13 5.46 84.65 0.46 0.59 16 8 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 9 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 C 0.14 4.08 0.55 2.78 0.00 4.08 16 14 C -0.17 -4.45 7.18 71.98 0.52 -3.93 16 15 C -0.14 -3.77 8.03 71.98 0.58 -3.19 16 16 C -0.07 -2.00 3.96 -19.87 -0.08 -2.08 16 17 C -0.12 -3.30 7.82 22.27 0.17 -3.12 16 18 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 19 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 20 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 21 C -0.12 -2.68 9.15 22.27 0.20 -2.48 16 22 H 0.03 0.88 6.61 -2.39 -0.02 0.86 16 23 H 0.05 1.96 6.59 -2.39 -0.02 1.95 16 24 H 0.07 2.40 5.97 -2.38 -0.01 2.39 16 25 H 0.02 0.89 6.95 -2.39 -0.02 0.87 16 26 H 0.07 3.00 5.64 -2.39 -0.01 2.98 16 27 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 28 H -0.01 -0.51 6.61 -2.39 -0.02 -0.52 16 29 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.08 1.71 6.51 -2.39 -0.02 1.69 16 31 H 0.05 1.44 6.80 -2.39 -0.02 1.42 16 32 H 0.06 1.47 6.51 -2.39 -0.02 1.45 16 33 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.06 1.71 6.11 -2.39 -0.01 1.70 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.11 3.72 7.16 -2.91 -0.02 3.70 16 37 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.14 2.41 6.30 -2.91 -0.02 2.39 16 Total: -1.00 -65.52 308.60 4.48 -61.04 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.01 Total: 13.34 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 4.29 Total: -40.67 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -2.85 Total: -80.46 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.52 4.48 -61.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585754741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.181 kcal (2) G-P(sol) polarization free energy of solvation -65.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds